ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41j14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009216.1| Triticum aestivum clone wle1n.pk0059.f5:fis, full insert mRNA sequence Length = 853 Score = 609 bits (307), Expect = e-171 Identities = 428/464 (92%), Gaps = 7/464 (1%) Strand = Plus / Minus Query: 51 tatgaactatacatctcaataacgtagcagcagcaagaattgttacatctccctggaggt 110 |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct: 844 tatgaaatatacatctcaataacgtagcaacagcaagaattgttacatctctctggaggt 785 Query: 111 cctaagctgctgttgctagcagtgctatttaaatcctcgttgccaatcatagatatacat 170 |||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||| Sbjct: 784 cctaagctgctgttgctaccactgctatttaaatcctctttgccaatcatagata--cat 727 Query: 171 tggagaaaa-gctatgccaaaatcaaagaccccatgaagatcttgagatgagaaatgcag 229 | ||||||| |||||||||||||||||||||||||||||||||||||||| | | | Sbjct: 726 ttgagaaaaagctatgccaaaatcaaagaccccatgaagatcttgagatgc---aggtac 670 Query: 230 gtacataccctctaaagttatcacctattcttgtcctgtatcaagttgccgaccatcttg 289 |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 669 atacataccctctaa-gtcatcacctatccttgtcctgtatcaagttgccgaccatcttg 611 Query: 290 gcaaggggcacggtgcccttggccatgatctccagcttggacgtggttgaggcgtgcgcg 349 | ||| |||| |||||||||||||||||||||||||||||||||| | || |||||| || Sbjct: 610 gaaagaggcagggtgcccttggccatgatctccagcttggacgtgttggaagcgtgcacg 551 Query: 350 aacagcgagagcccgaacatgaggagctcaggcaggaacagcctcgacgagaggaagccg 409 |||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| Sbjct: 550 aacatcgagagcccgaacatcaggagctcatgcaggagcagcctcgacgagaggaagccg 491 Query: 410 tgccagtagtgcggctcgaggtcgaagaatgcgttgaagaagcgtcgtgtaccttggagg 469 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 tgccaatagtgcggctcaaggtcgaagaatgcgttgaagaagcgtcgtgtaccttggagg 431 Query: 470 tcgagcttgagcaggacgtccatgccgaagcagaagaattccct 513 || |||||||||||||||||||||||||||||||||| |||||| Sbjct: 430 tccagcttgagcaggacgtccatgccgaagcagaagagttccct 387
>gb|BT009625.1| Triticum aestivum clone wre1n.pk0146.g4:fis, full insert mRNA sequence Length = 458 Score = 581 bits (293), Expect = e-163 Identities = 352/370 (95%), Gaps = 5/370 (1%) Strand = Plus / Minus Query: 166 tacattggagaaaagctatgccaaaatcaaagaccccatgaagatcttgagatgagaaat 225 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 tacatttgagaaaagctatgccaaaatcaaagaccccatgaagatcttgagatgagaaat 343 Query: 226 gcaggtacatac----cctctaaagttatcacctattcttgtcctgtatcaagttgccga 281 |||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||| Sbjct: 342 gcaggtacatacataccctctaa-gtcatcacctatccttgtcctgtatcaagttgccga 284 Query: 282 ccatcttggcaaggggcacggtgcccttggccatgatctccagcttggacgtggttgagg 341 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || | Sbjct: 283 ccatcttggcaagaggcacggtgcccttggccatgatctccagcttggacgtgttggaag 224 Query: 342 cgtgcgcgaacagcgagagcccgaacatgaggagctcaggcaggaacagcctcgacgaga 401 |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| Sbjct: 223 cgtgcgcgaacagcgagagcccaaacatcaagagctcaggcaggaacagcctcgacgaga 164 Query: 402 ggaagccgtgccagtagtgcggctcgaggtcgaagaatgcgttgaagaagcgtcgtgtac 461 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 163 ggaagccgtgccagtagtgcggctcgaggtcgaagaatgcgttgaagaaccgtcgtgtac 104 Query: 462 cttggaggtcgagcttgagcaggacgtccatgccgaagcagaagaattccctctgcctcc 521 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 103 cttggaggtccagcttgagcaggacgtccatgccgaagcagaagaattccctctgccgcc 44 Query: 522 gcctgtccgt 531 |||||||||| Sbjct: 43 gcctgtccgt 34
>gb|AY206862.1| Zea mays lycopene beta-cyclase (PS1) gene, complete cds Length = 2276 Score = 252 bits (127), Expect = 1e-63 Identities = 232/267 (86%) Strand = Plus / Minus Query: 261 tgtcctgtatcaagttgccgaccatcttggcaaggggcacggtgcccttggccatgatct 320 ||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||| Sbjct: 1907 tgtcctgtatcaagttgccaatcatcttgccaagaggcacggtgcccttggccatgatct 1848 Query: 321 ccagcttggacgtggttgaggcgtgcgcgaacagcgagagcccgaacatgaggagctcag 380 ||||| | |||| | | ||||||| | ||||||| | ||| |||||||| | |||||| | Sbjct: 1847 ccagcctcgacgagttggaggcgttcccgaacagtgcgaggccgaacatcaagagctccg 1788 Query: 381 gcaggaacagcctcgacgagaggaagccgtgccagtagtgcggctcgaggtcgaagaatg 440 |||||||||| || || || ||||| |||||||||||||| ||||| ||||||||||| | Sbjct: 1787 gcaggaacagtctggatgacaggaaaccgtgccagtagtgtggctccaggtcgaagaagg 1728 Query: 441 cgttgaagaagcgtcgtgtaccttggaggtcgagcttgagcaggacgtccatgccgaagc 500 ||| |||||| || || || || | |||||| |||||||||||||||||||||||||||| Sbjct: 1727 cgtcgaagaaccgccgcgttccctcgaggtccagcttgagcaggacgtccatgccgaagc 1668 Query: 501 agaagaattccctctgcctccgcctgt 527 ||||||| |||||||||| |||||||| Sbjct: 1667 agaagaactccctctgccgccgcctgt 1641
>ref|XM_464409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1470 Score = 200 bits (101), Expect = 3e-48 Identities = 221/261 (84%) Strand = Plus / Minus Query: 261 tgtcctgtatcaagttgccgaccatcttggcaaggggcacggtgcccttggccatgatct 320 ||||||| || | |||||||| ||||||||| || || ||||||||||||||||||||| Sbjct: 1459 tgtcctggatgaggttgccgatcatcttggcgagaggggcggtgcccttggccatgatct 1400 Query: 321 ccagcttggacgtggttgaggcgtgcgcgaacagcgagagcccgaacatgaggagctcag 380 | || |||||| | ||||| | ||||| || ||||| ||||||||| |||||| | Sbjct: 1399 cgaggcgcgacgtgttggaggccttggcgaagagggagaggccgaacatggcgagctccg 1340 Query: 381 gcaggaacagcctcgacgagaggaagccgtgccagtagtgcggctcgaggtcgaagaatg 440 ||| ||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||| | Sbjct: 1339 gcaagaagagcctcgacgacaggaagccgtgccagtagcgcggctccaggtcgaagaagg 1280 Query: 441 cgttgaagaagcgtcgtgtaccttggaggtcgagcttgagcaggacgtccatgccgaagc 500 ||| |||||| || || || || | ||||||||||||||| |||| |||||||||||||| Sbjct: 1279 cgtcgaagaatcgccgcgtgccgtcgaggtcgagcttgaggaggatgtccatgccgaagc 1220 Query: 501 agaagaattccctctgcctcc 521 ||||||| ||||||||||||| Sbjct: 1219 agaagaactccctctgcctcc 1199
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 200 bits (101), Expect = 3e-48 Identities = 221/261 (84%) Strand = Plus / Plus Query: 261 tgtcctgtatcaagttgccgaccatcttggcaaggggcacggtgcccttggccatgatct 320 ||||||| || | |||||||| ||||||||| || || ||||||||||||||||||||| Sbjct: 5028921 tgtcctggatgaggttgccgatcatcttggcgagaggggcggtgcccttggccatgatct 5028980 Query: 321 ccagcttggacgtggttgaggcgtgcgcgaacagcgagagcccgaacatgaggagctcag 380 | || |||||| | ||||| | ||||| || ||||| ||||||||| |||||| | Sbjct: 5028981 cgaggcgcgacgtgttggaggccttggcgaagagggagaggccgaacatggcgagctccg 5029040 Query: 381 gcaggaacagcctcgacgagaggaagccgtgccagtagtgcggctcgaggtcgaagaatg 440 ||| ||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||| | Sbjct: 5029041 gcaagaagagcctcgacgacaggaagccgtgccagtagcgcggctccaggtcgaagaagg 5029100 Query: 441 cgttgaagaagcgtcgtgtaccttggaggtcgagcttgagcaggacgtccatgccgaagc 500 ||| |||||| || || || || | ||||||||||||||| |||| |||||||||||||| Sbjct: 5029101 cgtcgaagaatcgccgcgtgccgtcgaggtcgagcttgaggaggatgtccatgccgaagc 5029160 Query: 501 agaagaattccctctgcctcc 521 ||||||| ||||||||||||| Sbjct: 5029161 agaagaactccctctgcctcc 5029181
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 200 bits (101), Expect = 3e-48 Identities = 221/261 (84%) Strand = Plus / Plus Query: 261 tgtcctgtatcaagttgccgaccatcttggcaaggggcacggtgcccttggccatgatct 320 ||||||| || | |||||||| ||||||||| || || ||||||||||||||||||||| Sbjct: 100047 tgtcctggatgaggttgccgatcatcttggcgagaggggcggtgcccttggccatgatct 100106 Query: 321 ccagcttggacgtggttgaggcgtgcgcgaacagcgagagcccgaacatgaggagctcag 380 | || |||||| | ||||| | ||||| || ||||| ||||||||| |||||| | Sbjct: 100107 cgaggcgcgacgtgttggaggccttggcgaagagggagaggccgaacatggcgagctccg 100166 Query: 381 gcaggaacagcctcgacgagaggaagccgtgccagtagtgcggctcgaggtcgaagaatg 440 ||| ||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||| | Sbjct: 100167 gcaagaagagcctcgacgacaggaagccgtgccagtagcgcggctccaggtcgaagaagg 100226 Query: 441 cgttgaagaagcgtcgtgtaccttggaggtcgagcttgagcaggacgtccatgccgaagc 500 ||| |||||| || || || || | ||||||||||||||| |||| |||||||||||||| Sbjct: 100227 cgtcgaagaatcgccgcgtgccgtcgaggtcgagcttgaggaggatgtccatgccgaagc 100286 Query: 501 agaagaattccctctgcctcc 521 ||||||| ||||||||||||| Sbjct: 100287 agaagaactccctctgcctcc 100307
>emb|CR925723.7| Zebrafish DNA sequence from clone RP71-81E14, complete sequence Length = 157989 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 169 attggagaaaagctatgccaaaa 191 ||||||||||||||||||||||| Sbjct: 15170 attggagaaaagctatgccaaaa 15148
>ref|XM_679019.1| PREDICTED: Danio rerio similar to ReO_6 (LOC556265), mRNA Length = 1716 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 169 attggagaaaagctatgccaaaa 191 ||||||||||||||||||||||| Sbjct: 418 attggagaaaagctatgccaaaa 440
>emb|BX664627.16| Zebrafish DNA sequence from clone DKEYP-55D11 in linkage group 6, complete sequence Length = 206408 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 169 attggagaaaagctatgccaaaa 191 ||||||||||||||||||||||| Sbjct: 149985 attggagaaaagctatgccaaaa 149963
>emb|AL954176.9| Zebrafish DNA sequence from clone CH211-222J14, complete sequence Length = 185925 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 169 attggagaaaagctatgccaaaa 191 ||||||||||||||||||||||| Sbjct: 28672 attggagaaaagctatgccaaaa 28694
>ref|NM_001030960.1| Gallus gallus kelch-like 18 (Drosophila) (KLHL18), mRNA Length = 3698 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 370 gaggagctcaggcaggaacagc 391 |||||||||||||||||||||| Sbjct: 815 gaggagctcaggcaggaacagc 794
>emb|AL365277.23| Human DNA sequence from clone RP11-69E11 on chromosome 1 Contains the 3' end of the MACF1 gene for microtubule-actin crosslinking factor 1, the BMP8A gene for bone morphogenetic protein 8A, a 3-oxoacid CoA transferase 2 (OXCT2) pseudogene, a novel gene, a peptidylprolyl isomerase E (cyclophilin E) (PPIE) pseudogene, the 3' end of the PABPC4 gene for cytoplasmic 4 (inducible form) poly(A) binding protein, part of a novel gene and two CpG islands, complete sequence Length = 115968 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Minus Query: 131 agtgctatttaaatcctcgttgccaatcatagat 164 ||||| || ||||||||| ||||||||||||||| Sbjct: 7112 agtgcaatctaaatcctctttgccaatcatagat 7079
>emb|AJ720960.1| Gallus gallus mRNA for hypothetical protein, clone 31c15 Length = 3982 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 370 gaggagctcaggcaggaacagc 391 |||||||||||||||||||||| Sbjct: 815 gaggagctcaggcaggaacagc 794
>gb|AC168153.2| Mus musculus chromosome 18, clone wi1-1640H20, complete sequence Length = 40183 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 aagaccccatgaagatcttga 215 ||||||||||||||||||||| Sbjct: 28160 aagaccccatgaagatcttga 28140
>gb|DQ226671.1| Boechera divaricarpa isolate SLW-348-443-C01 mRNA sequence Length = 449 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 488 tccatgccgaagcagaagaattccctctg 516 ||||| ||||| ||||||||||||||||| Sbjct: 401 tccattccgaaacagaagaattccctctg 429
>gb|AC161418.4| Mus musculus BAC clone RP23-325K2 from chromosome 3, complete sequence Length = 202765 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 aaagaccccatgaagatcttg 214 ||||||||||||||||||||| Sbjct: 178019 aaagaccccatgaagatcttg 177999
>gb|AY860818.1| Chlamydomonas reinhardtii putative chloroplast lycopene beta cyclase precursor (LCYB) mRNA, complete cds; nuclear gene for chloroplast product Length = 3272 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 467 aggtcgagcttgagcaggacgtccatgcc 495 |||| |||||||||||| ||||||||||| Sbjct: 1492 aggttgagcttgagcagcacgtccatgcc 1464
>gb|AC114794.5| Homo sapiens BAC clone RP11-680G19 from 2, complete sequence Length = 168875 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 atgaagatcttgagatgagaa 223 ||||||||||||||||||||| Sbjct: 106285 atgaagatcttgagatgagaa 106305
>emb|AL954729.6| Zebrafish DNA sequence from clone CH211-246H21 in linkage group 6, complete sequence Length = 92440 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 tctccctggaggtcctaagct 118 ||||||||||||||||||||| Sbjct: 64564 tctccctggaggtcctaagct 64544
>emb|AL929458.7| Zebrafish DNA sequence from clone CH211-248I12, complete sequence Length = 137478 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 tctccctggaggtcctaagct 118 ||||||||||||||||||||| Sbjct: 39300 tctccctggaggtcctaagct 39280
>emb|AL928872.7| Zebrafish DNA sequence from clone DKEYP-59A2, complete sequence Length = 200760 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 tctccctggaggtcctaagct 118 ||||||||||||||||||||| Sbjct: 30308 tctccctggaggtcctaagct 30328
>gb|AC102514.13| Mus musculus chromosome 7, clone RP24-419H14, complete sequence Length = 140911 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 atagatatacattggagaaa 178 |||||||||||||||||||| Sbjct: 6752 atagatatacattggagaaa 6771
>gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195335 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ccctctgcctccgcctgtcc 529 |||||||||||||||||||| Sbjct: 8991 ccctctgcctccgcctgtcc 9010
>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence Length = 206735 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 agcagaagaattccctctgcctcc 521 |||| ||||||||||||||||||| Sbjct: 46247 agcacaagaattccctctgcctcc 46270
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 aggtcgaagaatgcgttgaa 447 |||||||||||||||||||| Sbjct: 951380 aggtcgaagaatgcgttgaa 951361
>gb|AC132681.5| Mus musculus BAC clone RP23-442K13 from chromosome 3, complete sequence Length = 190938 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aagaccccatgaagatcttg 214 |||||||||||||||||||| Sbjct: 112641 aagaccccatgaagatcttg 112622
>ref|NM_172718.1| Mus musculus RUN and TBC1 domain containing 2 (Rutbc2), mRNA Length = 5086 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 agcagaagaattccctctgcctcc 521 |||| ||||||||||||||||||| Sbjct: 4844 agcacaagaattccctctgcctcc 4867
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 cgaacagcgagagcccgaacatga 371 ||||||||||||| |||||||||| Sbjct: 5271816 cgaacagcgagaggccgaacatga 5271793
>gb|AC130548.3| Mus musculus BAC clone RP24-456F12 from chromosome 5, complete sequence Length = 170929 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 agcagaagaattccctctgcctcc 521 |||| ||||||||||||||||||| Sbjct: 119462 agcacaagaattccctctgcctcc 119485
>gb|AC143329.3| Mus musculus BAC clone RP23-347I6 from chromosome 7, complete sequence Length = 201979 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 atagatatacattggagaaa 178 |||||||||||||||||||| Sbjct: 38451 atagatatacattggagaaa 38432
>gb|AC127365.4| Mus musculus BAC clone RP23-8K10 from 3, complete sequence Length = 191217 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aagaccccatgaagatcttg 214 |||||||||||||||||||| Sbjct: 1325 aagaccccatgaagatcttg 1306
>gb|AC055855.9| Homo sapiens chromosome 15, clone RP11-352G18, complete sequence Length = 158420 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gaaaagctatgccaaaatca 194 |||||||||||||||||||| Sbjct: 112906 gaaaagctatgccaaaatca 112925
>gb|AC010526.7| Homo sapiens chromosome 19 clone LLNLR-301A8, complete sequence Length = 37486 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 catctccctggaggtcctaa 115 |||||||||||||||||||| Sbjct: 27983 catctccctggaggtcctaa 28002
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 agaaaagctatgccaaaatc 193 |||||||||||||||||||| Sbjct: 2092167 agaaaagctatgccaaaatc 2092186
>gb|AF489520.1| Sandersonia aurantiaca beta-lycopene cyclase mRNA, complete cds Length = 1696 Score = 40.1 bits (20), Expect = 7.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 469 gtcgagcttgagcaggacgtccatgccgaagcagaagaattccctctg 516 ||||||||| || | || |||||| || ||||||||||| |||||||| Sbjct: 1352 gtcgagcttaagtaagatgtccataccaaagcagaagaactccctctg 1305
>gb|AF396702.1|AF396700S3 Mus musculus Hermansky-Pudlak syndrome type-3 protein (Hps3) gene, exons 12 through 16 Length = 22964 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tgaactatacatctcaataa 72 |||||||||||||||||||| Sbjct: 2759 tgaactatacatctcaataa 2778
>gb|AC023533.6| Homo sapiens chromosome 8, clone RP11-288G19, complete sequence Length = 193083 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 agaaatgcaggtacataccc 239 |||||||||||||||||||| Sbjct: 154367 agaaatgcaggtacataccc 154386
>dbj|AK167632.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530025L03 product:Hypothetical Ypt/Rab-GAP domain of gyp1p structure containing protein homolog [Mus musculus], full insert sequence Length = 4303 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 agcagaagaattccctctgcctcc 521 |||| ||||||||||||||||||| Sbjct: 4061 agcacaagaattccctctgcctcc 4084
>gb|AC158985.2| Mus musculus BAC clone RP23-277H13 from chromosome 16, complete sequence Length = 174321 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 aagaccccatgaagatcttg 214 |||||||||||||||||||| Sbjct: 38656 aagaccccatgaagatcttg 38675
>dbj|AK053555.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130107M15 product:hypothetical Ypt/Rab-GAP domain of gyp1p structure containing protein, full insert sequence Length = 5086 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 agcagaagaattccctctgcctcc 521 |||| ||||||||||||||||||| Sbjct: 4844 agcacaagaattccctctgcctcc 4867
>gb|AC159138.6| Mus musculus BAC RP23-315F23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180124 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ccctctgcctccgcctgtcc 529 |||||||||||||||||||| Sbjct: 95021 ccctctgcctccgcctgtcc 95040
>gb|AC010311.11| Homo sapiens chromosome 19 clone CTB-62I7, complete sequence Length = 72172 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 catctccctggaggtcctaa 115 |||||||||||||||||||| Sbjct: 70308 catctccctggaggtcctaa 70289
>gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, complete sequence Length = 193466 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 agcagaagaattccctctgcctcc 521 |||| ||||||||||||||||||| Sbjct: 32707 agcacaagaattccctctgcctcc 32684
>gb|AC079442.24| Mus musculus strain C57BL/6J chromosome 3 clone rp23-379f4, complete sequence Length = 196996 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tgaactatacatctcaataa 72 |||||||||||||||||||| Sbjct: 3395 tgaactatacatctcaataa 3414
>gb|AC073883.34| Mus musculus strain C57BL/6J chromosome 3 clone rp23-71e13, complete sequence Length = 213482 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tgaactatacatctcaataa 72 |||||||||||||||||||| Sbjct: 42308 tgaactatacatctcaataa 42289 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,488,684 Number of Sequences: 3902068 Number of extensions: 4488684 Number of successful extensions: 76261 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76126 Number of HSP's gapped (non-prelim): 128 length of query: 535 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 512 effective length of database: 17,143,297,704 effective search space: 8777368424448 effective search space used: 8777368424448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
