ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41j08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_464682.1| Oryza sativa (japonica cultivar-group), mRNA 315 8e-83
2ref|XM_507465.1| PREDICTED Oryza sativa (japonica cultivar-group... 315 8e-83
3ref|XM_507464.1| PREDICTED Oryza sativa (japonica cultivar-group... 315 8e-83
4ref|XM_506760.2| PREDICTED Oryza sativa (japonica cultivar-group... 315 8e-83
5dbj|AK104393.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 8e-83
6dbj|AK104206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 8e-83
7dbj|AK099194.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 8e-83
8dbj|AK060915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 315 8e-83
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
10dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
11dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
12gb|AY107012.1| Zea mays PCO099293 mRNA sequence 48 0.029
13gb|AY596541.1| Saccharum officinarum clone SCCCLR1C04B02, comple... 44 0.45
14emb|AL365272.20| Human DNA sequence from clone RP11-328C17 on ch... 42 1.8
15gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 42 1.8
16gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.8
17emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 42 1.8
18gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complet... 42 1.8
19gb|M17434.1|RPFHP Rinderpest virus hemagglutinin gene, complete cds 42 1.8
20dbj|D82982.1|RPFHAP Rinderpest virus genomic RNA for HA protein,... 42 1.8
21gb|AY655638.1| Menidia menidia TMO-4c4 gene, partial sequence 40 7.1
22gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 7.1
23gb|AY532606.1| Rock bream iridovirus strain RBIV-KOR-TY1 from So... 40 7.1
24ref|XM_414843.1| PREDICTED: Gallus gallus similar to 60S ribosom... 40 7.1
25emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chr... 40 7.1
26gb|AC008149.14| Homo sapiens 12 BAC RP11-394J1 (Roswell Park Can... 40 7.1
27gb|AY894343.1| Orange-spotted grouper iridovirus, complete genome 40 7.1
28gb|AF263284.4| Homo sapiens chromosome 8 clone GS1-9J2 map 8q11-... 40 7.1
29gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, com... 40 7.1
30gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.1
31emb|BX929329.2| Gallus gallus finished cDNA, clone ChEST982j14 40 7.1
32emb|BX935844.1| Gallus gallus finished cDNA, clone ChEST163e11 40 7.1
33emb|AL732341.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.1
34emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.1
35gb|AY539385.1| Menidia menidia TMO-4c4 gene, partial sequence 40 7.1
36gb|AC141560.4| Mus musculus BAC clone RP23-425A5 from 12, comple... 40 7.1

>ref|XM_464682.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1001

 Score =  315 bits (159), Expect = 8e-83
 Identities = 327/383 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
           |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 615 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 556

                                                                       
Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
            ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 555 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 496

                                                                       
Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
           |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 495 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 436

                                                                       
Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379
           ||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||
Sbjct: 435 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 376

                                                                       
Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439
           || |  | || || |||||| ||  |||||||||||||| || ||||| || |||| |||
Sbjct: 375 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 316

                                                                       
Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499
           |||||| || || |||||| ||||||| ||||||| |||||| |||| ||||||||||||
Sbjct: 315 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 256

                                  
Query: 500 gtcatcggcttgcttgttggtgg 522
            || ||  | |||||||||||||
Sbjct: 255 ctcgtccacctgcttgttggtgg 233



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>ref|XM_507465.1| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA
          Length = 1030

 Score =  315 bits (159), Expect = 8e-83
 Identities = 327/383 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
           |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 642 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 583

                                                                       
Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
            ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 582 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 523

                                                                       
Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
           |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 522 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 463

                                                                       
Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379
           ||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||
Sbjct: 462 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 403

                                                                       
Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439
           || |  | || || |||||| ||  |||||||||||||| || ||||| || |||| |||
Sbjct: 402 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 343

                                                                       
Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499
           |||||| || || |||||| ||||||| ||||||| |||||| |||| ||||||||||||
Sbjct: 342 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 283

                                  
Query: 500 gtcatcggcttgcttgttggtgg 522
            || ||  | |||||||||||||
Sbjct: 282 ctcgtccacctgcttgttggtgg 260



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>ref|XM_507464.1| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA
          Length = 1031

 Score =  315 bits (159), Expect = 8e-83
 Identities = 327/383 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
           |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 643 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 584

                                                                       
Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
            ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 583 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 524

                                                                       
Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
           |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 523 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 464

                                                                       
Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379
           ||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||
Sbjct: 463 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 404

                                                                       
Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439
           || |  | || || |||||| ||  |||||||||||||| || ||||| || |||| |||
Sbjct: 403 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 344

                                                                       
Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499
           |||||| || || |||||| ||||||| ||||||| |||||| |||| ||||||||||||
Sbjct: 343 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 284

                                  
Query: 500 gtcatcggcttgcttgttggtgg 522
            || ||  | |||||||||||||
Sbjct: 283 ctcgtccacctgcttgttggtgg 261



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>ref|XM_506760.2| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA
          Length = 1031

 Score =  315 bits (159), Expect = 8e-83
 Identities = 327/383 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
           |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 643 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 584

                                                                       
Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
            ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 583 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 524

                                                                       
Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
           |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 523 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 464

                                                                       
Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379
           ||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||
Sbjct: 463 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 404

                                                                       
Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439
           || |  | || || |||||| ||  |||||||||||||| || ||||| || |||| |||
Sbjct: 403 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 344

                                                                       
Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499
           |||||| || || |||||| ||||||| ||||||| |||||| |||| ||||||||||||
Sbjct: 343 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 284

                                  
Query: 500 gtcatcggcttgcttgttggtgg 522
            || ||  | |||||||||||||
Sbjct: 283 ctcgtccacctgcttgttggtgg 261



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>dbj|AK104393.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B07, full
           insert sequence
          Length = 1030

 Score =  315 bits (159), Expect = 8e-83
 Identities = 327/383 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
           |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 642 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 583

                                                                       
Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
            ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 582 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 523

                                                                       
Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
           |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 522 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 463

                                                                       
Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379
           ||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||
Sbjct: 462 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 403

                                                                       
Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439
           || |  | || || |||||| ||  |||||||||||||| || ||||| || |||| |||
Sbjct: 402 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 343

                                                                       
Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499
           |||||| || || |||||| ||||||| ||||||| |||||| |||| ||||||||||||
Sbjct: 342 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 283

                                  
Query: 500 gtcatcggcttgcttgttggtgg 522
            || ||  | |||||||||||||
Sbjct: 282 ctcgtccacctgcttgttggtgg 260



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>dbj|AK104206.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G01, full
           insert sequence
          Length = 1031

 Score =  315 bits (159), Expect = 8e-83
 Identities = 327/383 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
           |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 643 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 584

                                                                       
Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
            ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 583 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 524

                                                                       
Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
           |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 523 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 464

                                                                       
Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379
           ||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||
Sbjct: 463 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 404

                                                                       
Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439
           || |  | || || |||||| ||  |||||||||||||| || ||||| || |||| |||
Sbjct: 403 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 344

                                                                       
Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499
           |||||| || || |||||| ||||||| ||||||| |||||| |||| ||||||||||||
Sbjct: 343 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 284

                                  
Query: 500 gtcatcggcttgcttgttggtgg 522
            || ||  | |||||||||||||
Sbjct: 283 ctcgtccacctgcttgttggtgg 261



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>dbj|AK099194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109D07, full
           insert sequence
          Length = 1001

 Score =  315 bits (159), Expect = 8e-83
 Identities = 327/383 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
           |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 615 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 556

                                                                       
Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
            ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 555 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 496

                                                                       
Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
           |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 495 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 436

                                                                       
Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379
           ||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||
Sbjct: 435 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 376

                                                                       
Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439
           || |  | || || |||||| ||  |||||||||||||| || ||||| || |||| |||
Sbjct: 375 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 316

                                                                       
Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499
           |||||| || || |||||| ||||||| ||||||| |||||| |||| ||||||||||||
Sbjct: 315 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 256

                                  
Query: 500 gtcatcggcttgcttgttggtgg 522
            || ||  | |||||||||||||
Sbjct: 255 ctcgtccacctgcttgttggtgg 233



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>dbj|AK060915.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G06, full
           insert sequence
          Length = 1031

 Score =  315 bits (159), Expect = 8e-83
 Identities = 327/383 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
           |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 643 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 584

                                                                       
Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
            ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 583 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 524

                                                                       
Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
           |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 523 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 464

                                                                       
Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379
           ||| |||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||
Sbjct: 463 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 404

                                                                       
Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439
           || |  | || || |||||| ||  |||||||||||||| || ||||| || |||| |||
Sbjct: 403 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 344

                                                                       
Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499
           |||||| || || |||||| ||||||| ||||||| |||||| |||| ||||||||||||
Sbjct: 343 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 284

                                  
Query: 500 gtcatcggcttgcttgttggtgg 522
            || ||  | |||||||||||||
Sbjct: 283 ctcgtccacctgcttgttggtgg 261



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  218 bits (110), Expect = 1e-53
 Identities = 185/210 (88%)
 Strand = Plus / Plus

                                                                           
Query: 140     gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
               |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 6679793 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 6679852

                                                                           
Query: 200     cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
                ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 6679853 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 6679912

                                                                           
Query: 260     ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
               |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 6679913 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 6679972

                                             
Query: 320     cgatgtcaccagcaggtacgccgccgcctg 349
               ||| |||| |||||||||||||| ||||||
Sbjct: 6679973 cgacgtcagcagcaggtacgccgacgcctg 6680002



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                           
Query: 346     cctggtccaggaggaaaatcagccaatcgtagcgagcgcgggacttgaaggatggcatta 405
               |||| |||||||||||||| ||||||||  |||||| |  | || || |||||| ||  |
Sbjct: 6681191 cctgatccaggaggaaaatgagccaatcaaagcgagtgatgaacctgcaggatgacagca 6681250

                                                                    
Query: 406     ggatggaggccacggaataggcggcagtgacggcgttgatgcaaactaaatac 458
               ||||||||||||| || ||||| || |||| ||||||||| || || ||||||
Sbjct: 6681251 ggatggaggccaccgagtaggcagccgtgatggcgttgatccagaccaaatac 6681303



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                           
Query: 460     tgaagcctgagaggttggagaagctgatctccccgtaggtgtcatcggcttgcttgttgg 519
               ||||||| ||||||| |||||| |||| |||||||||||| || ||  | ||||||||||
Sbjct: 6681806 tgaagccggagaggtcggagaacctgacctccccgtaggtctcgtccacctgcttgttgg 6681865

                  
Query: 520     tgg 522
               |||
Sbjct: 6681866 tgg 6681868



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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:B1131G07
          Length = 133992

 Score =  218 bits (110), Expect = 1e-53
 Identities = 185/210 (88%)
 Strand = Plus / Plus

                                                                        
Query: 140  gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
            |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 846  gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 905

                                                                        
Query: 200  cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
             ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 906  gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 965

                                                                        
Query: 260  ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
            |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 966  ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 1025

                                          
Query: 320  cgatgtcaccagcaggtacgccgccgcctg 349
            ||| |||| |||||||||||||| ||||||
Sbjct: 1026 cgacgtcagcagcaggtacgccgacgcctg 1055



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                        
Query: 346  cctggtccaggaggaaaatcagccaatcgtagcgagcgcgggacttgaaggatggcatta 405
            |||| |||||||||||||| ||||||||  |||||| |  | || || |||||| ||  |
Sbjct: 2244 cctgatccaggaggaaaatgagccaatcaaagcgagtgatgaacctgcaggatgacagca 2303

                                                                 
Query: 406  ggatggaggccacggaataggcggcagtgacggcgttgatgcaaactaaatac 458
            ||||||||||||| || ||||| || |||| ||||||||| || || ||||||
Sbjct: 2304 ggatggaggccaccgagtaggcagccgtgatggcgttgatccagaccaaatac 2356



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                        
Query: 460  tgaagcctgagaggttggagaagctgatctccccgtaggtgtcatcggcttgcttgttgg 519
            ||||||| ||||||| |||||| |||| |||||||||||| || ||  | ||||||||||
Sbjct: 2859 tgaagccggagaggtcggagaacctgacctccccgtaggtctcgtccacctgcttgttgg 2918

               
Query: 520  tgg 522
            |||
Sbjct: 2919 tgg 2921



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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0027A02
          Length = 140402

 Score =  218 bits (110), Expect = 1e-53
 Identities = 185/210 (88%)
 Strand = Plus / Plus

                                                                          
Query: 140    gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199
              |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | 
Sbjct: 114168 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 114227

                                                                          
Query: 200    cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259
               ||||||||||||||||||||   ||||||||| || |||||||||||||||||||| ||
Sbjct: 114228 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 114287

                                                                          
Query: 260    ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319
              |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||   
Sbjct: 114288 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 114347

                                            
Query: 320    cgatgtcaccagcaggtacgccgccgcctg 349
              ||| |||| |||||||||||||| ||||||
Sbjct: 114348 cgacgtcagcagcaggtacgccgacgcctg 114377



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                          
Query: 346    cctggtccaggaggaaaatcagccaatcgtagcgagcgcgggacttgaaggatggcatta 405
              |||| |||||||||||||| ||||||||  |||||| |  | || || |||||| ||  |
Sbjct: 115566 cctgatccaggaggaaaatgagccaatcaaagcgagtgatgaacctgcaggatgacagca 115625

                                                                   
Query: 406    ggatggaggccacggaataggcggcagtgacggcgttgatgcaaactaaatac 458
              ||||||||||||| || ||||| || |||| ||||||||| || || ||||||
Sbjct: 115626 ggatggaggccaccgagtaggcagccgtgatggcgttgatccagaccaaatac 115678



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                          
Query: 460    tgaagcctgagaggttggagaagctgatctccccgtaggtgtcatcggcttgcttgttgg 519
              ||||||| ||||||| |||||| |||| |||||||||||| || ||  | ||||||||||
Sbjct: 116181 tgaagccggagaggtcggagaacctgacctccccgtaggtctcgtccacctgcttgttgg 116240

                 
Query: 520    tgg 522
              |||
Sbjct: 116241 tgg 116243



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>gb|AY107012.1| Zea mays PCO099293 mRNA sequence
          Length = 976

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 288 gcgaggtacaccagctccgccgccgctg 315
           |||||||||| |||||||||||||||||
Sbjct: 565 gcgaggtacagcagctccgccgccgctg 538



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>gb|AY596541.1| Saccharum officinarum clone SCCCLR1C04B02, complete sequence
          Length = 883

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 288 gcgaggtacaccagctccgccgccgc 313
           |||||||||| |||||||||||||||
Sbjct: 461 gcgaggtacagcagctccgccgccgc 436



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>emb|AL365272.20| Human DNA sequence from clone RP11-328C17 on chromosome 6 Contains the
             gene for mitogen-activated protein kinase phosphatase X
             (MKPX), the 5' end of the IRF4 gene for interferon
             regulatory factor 4 and 2 CpG islands, complete sequence
          Length = 132449

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 459   ttgaagcctgagaggttggag 479
             |||||||||||||||||||||
Sbjct: 40818 ttgaagcctgagaggttggag 40838



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 175     cgaagcagagcagcgcggcggcctgcagc 203
               ||||||| ||||||||| |||||||||||
Sbjct: 2962911 cgaagcacagcagcgcgccggcctgcagc 2962939



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 194     ggcctgcagcgccacggacac 214
               |||||||||||||||||||||
Sbjct: 4984191 ggcctgcagcgccacggacac 4984211



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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
            complete sequence
          Length = 169168

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 183  agcagcgcggcggcctgcagc 203
            |||||||||||||||||||||
Sbjct: 2873 agcagcgcggcggcctgcagc 2893



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>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence
          Length = 192562

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 394   aggatggcattaggatggagg 414
             |||||||||||||||||||||
Sbjct: 81284 aggatggcattaggatggagg 81264



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>gb|M17434.1|RPFHP Rinderpest virus hemagglutinin gene, complete cds
          Length = 1952

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 32  tcagtgattgttatcatggat 52
           |||||||||||||||||||||
Sbjct: 691 tcagtgattgttatcatggat 671



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>dbj|D82982.1|RPFHAP Rinderpest virus genomic RNA for HA protein, complete cds
          Length = 1830

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 32  tcagtgattgttatcatggat 52
           |||||||||||||||||||||
Sbjct: 671 tcagtgattgttatcatggat 651



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>gb|AY655638.1| Menidia menidia TMO-4c4 gene, partial sequence
          Length = 497

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 262 acgacacctcccggtcgccctccc 285
           ||||| ||||||||||||||||||
Sbjct: 323 acgactcctcccggtcgccctccc 346



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   agcgcggcggcctgcagcgc 205
             ||||||||||||||||||||
Sbjct: 59687 agcgcggcggcctgcagcgc 59706



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>gb|AY532606.1| Rock bream iridovirus strain RBIV-KOR-TY1 from South Korea, complete
             genome
          Length = 112080

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   ggacacggtggccctgccgc 228
             ||||||||||||||||||||
Sbjct: 57876 ggacacggtggccctgccgc 57857



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>ref|XM_414843.1| PREDICTED: Gallus gallus similar to 60S ribosomal protein L3-like
           (LOC416542), mRNA
          Length = 1303

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 467 tgagaggttggagaagctgatctc 490
           ||||||||||||||||| ||||||
Sbjct: 613 tgagaggttggagaagcagatctc 636



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>emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chromosome 6 Contains the 3'
              end of the LPA gene for lipoprotein (Lp(a)) and a CpG
              island, complete sequence
          Length = 135751

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    caggaggaaaatcagccaat 372
              ||||||||||||||||||||
Sbjct: 132641 caggaggaaaatcagccaat 132622



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>gb|AC008149.14| Homo sapiens 12 BAC RP11-394J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96995

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    cactaatatcagtgattgtt 43
             ||||||||||||||||||||
Sbjct: 14300 cactaatatcagtgattgtt 14319



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>gb|AY894343.1| Orange-spotted grouper iridovirus, complete genome
          Length = 112636

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   ggacacggtggccctgccgc 228
             ||||||||||||||||||||
Sbjct: 58185 ggacacggtggccctgccgc 58166



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>gb|AF263284.4| Homo sapiens chromosome 8 clone GS1-9J2 map 8q11-q13, complete
            sequence
          Length = 99592

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  gccctgccgcagaaccgacc 238
            ||||||||||||||||||||
Sbjct: 7493 gccctgccgcagaaccgacc 7512



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>gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, complete sequence
          Length = 187204

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gccctgccgcagaaccgacc 238
             ||||||||||||||||||||
Sbjct: 88468 gccctgccgcagaaccgacc 88487



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     cggagacgagggagagcgcg 173
               ||||||||||||||||||||
Sbjct: 5043270 cggagacgagggagagcgcg 5043251



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     cggagacgagggagagcgcg 173
               ||||||||||||||||||||
Sbjct: 5000618 cggagacgagggagagcgcg 5000599



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>emb|BX929329.2| Gallus gallus finished cDNA, clone ChEST982j14
          Length = 1303

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 467 tgagaggttggagaagctgatctc 490
           ||||||||||||||||| ||||||
Sbjct: 614 tgagaggttggagaagcagatctc 637



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>emb|BX935844.1| Gallus gallus finished cDNA, clone ChEST163e11
          Length = 1304

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 467 tgagaggttggagaagctgatctc 490
           ||||||||||||||||| ||||||
Sbjct: 614 tgagaggttggagaagcagatctc 637



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>emb|AL732341.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0213E10, complete
             sequence
          Length = 26755

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   aggcggagacgagggagagc 170
             ||||||||||||||||||||
Sbjct: 23073 aggcggagacgagggagagc 23092



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>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete
            sequence
          Length = 110682

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  aggcggagacgagggagagc 170
            ||||||||||||||||||||
Sbjct: 7196 aggcggagacgagggagagc 7215



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>gb|AY539385.1| Menidia menidia TMO-4c4 gene, partial sequence
          Length = 483

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 262 acgacacctcccggtcgccctccc 285
           ||||| ||||||||||||||||||
Sbjct: 323 acgactcctcccggtcgccctccc 346



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>gb|AC141560.4| Mus musculus BAC clone RP23-425A5 from 12, complete sequence
          Length = 196665

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   gcgggacttgaaggatggca 402
             ||||||||||||||||||||
Sbjct: 46340 gcgggacttgaaggatggca 46359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,759,138
Number of Sequences: 3902068
Number of extensions: 3759138
Number of successful extensions: 78398
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78115
Number of HSP's gapped (non-prelim): 272
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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