| Clone Name | rbaal41j08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464682.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1001 Score = 315 bits (159), Expect = 8e-83 Identities = 327/383 (85%) Strand = Plus / Minus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 615 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 556 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 555 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 496 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 495 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 436 Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379 ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||| Sbjct: 435 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 376 Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439 || | | || || |||||| || |||||||||||||| || ||||| || |||| ||| Sbjct: 375 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 316 Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499 |||||| || || |||||| ||||||| ||||||| |||||| |||| |||||||||||| Sbjct: 315 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 256 Query: 500 gtcatcggcttgcttgttggtgg 522 || || | ||||||||||||| Sbjct: 255 ctcgtccacctgcttgttggtgg 233
>ref|XM_507465.1| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA Length = 1030 Score = 315 bits (159), Expect = 8e-83 Identities = 327/383 (85%) Strand = Plus / Minus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 642 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 583 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 582 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 523 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 522 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 463 Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379 ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||| Sbjct: 462 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 403 Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439 || | | || || |||||| || |||||||||||||| || ||||| || |||| ||| Sbjct: 402 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 343 Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499 |||||| || || |||||| ||||||| ||||||| |||||| |||| |||||||||||| Sbjct: 342 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 283 Query: 500 gtcatcggcttgcttgttggtgg 522 || || | ||||||||||||| Sbjct: 282 ctcgtccacctgcttgttggtgg 260
>ref|XM_507464.1| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA Length = 1031 Score = 315 bits (159), Expect = 8e-83 Identities = 327/383 (85%) Strand = Plus / Minus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 643 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 584 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 583 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 524 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 523 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 464 Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379 ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||| Sbjct: 463 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 404 Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439 || | | || || |||||| || |||||||||||||| || ||||| || |||| ||| Sbjct: 403 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 344 Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499 |||||| || || |||||| ||||||| ||||||| |||||| |||| |||||||||||| Sbjct: 343 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 284 Query: 500 gtcatcggcttgcttgttggtgg 522 || || | ||||||||||||| Sbjct: 283 ctcgtccacctgcttgttggtgg 261
>ref|XM_506760.2| PREDICTED Oryza sativa (japonica cultivar-group), P0027A02.30 mRNA Length = 1031 Score = 315 bits (159), Expect = 8e-83 Identities = 327/383 (85%) Strand = Plus / Minus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 643 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 584 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 583 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 524 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 523 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 464 Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379 ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||| Sbjct: 463 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 404 Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439 || | | || || |||||| || |||||||||||||| || ||||| || |||| ||| Sbjct: 403 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 344 Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499 |||||| || || |||||| ||||||| ||||||| |||||| |||| |||||||||||| Sbjct: 343 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 284 Query: 500 gtcatcggcttgcttgttggtgg 522 || || | ||||||||||||| Sbjct: 283 ctcgtccacctgcttgttggtgg 261
>dbj|AK104393.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B07, full insert sequence Length = 1030 Score = 315 bits (159), Expect = 8e-83 Identities = 327/383 (85%) Strand = Plus / Minus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 642 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 583 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 582 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 523 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 522 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 463 Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379 ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||| Sbjct: 462 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 403 Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439 || | | || || |||||| || |||||||||||||| || ||||| || |||| ||| Sbjct: 402 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 343 Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499 |||||| || || |||||| ||||||| ||||||| |||||| |||| |||||||||||| Sbjct: 342 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 283 Query: 500 gtcatcggcttgcttgttggtgg 522 || || | ||||||||||||| Sbjct: 282 ctcgtccacctgcttgttggtgg 260
>dbj|AK104206.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G01, full insert sequence Length = 1031 Score = 315 bits (159), Expect = 8e-83 Identities = 327/383 (85%) Strand = Plus / Minus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 643 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 584 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 583 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 524 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 523 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 464 Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379 ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||| Sbjct: 463 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 404 Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439 || | | || || |||||| || |||||||||||||| || ||||| || |||| ||| Sbjct: 403 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 344 Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499 |||||| || || |||||| ||||||| ||||||| |||||| |||| |||||||||||| Sbjct: 343 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 284 Query: 500 gtcatcggcttgcttgttggtgg 522 || || | ||||||||||||| Sbjct: 283 ctcgtccacctgcttgttggtgg 261
>dbj|AK099194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109D07, full insert sequence Length = 1001 Score = 315 bits (159), Expect = 8e-83 Identities = 327/383 (85%) Strand = Plus / Minus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 615 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 556 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 555 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 496 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 495 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 436 Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379 ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||| Sbjct: 435 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 376 Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439 || | | || || |||||| || |||||||||||||| || ||||| || |||| ||| Sbjct: 375 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 316 Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499 |||||| || || |||||| ||||||| ||||||| |||||| |||| |||||||||||| Sbjct: 315 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 256 Query: 500 gtcatcggcttgcttgttggtgg 522 || || | ||||||||||||| Sbjct: 255 ctcgtccacctgcttgttggtgg 233
>dbj|AK060915.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G06, full insert sequence Length = 1031 Score = 315 bits (159), Expect = 8e-83 Identities = 327/383 (85%) Strand = Plus / Minus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 643 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 584 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 583 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 524 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 523 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 464 Query: 320 cgatgtcaccagcaggtacgccgccgcctggtccaggaggaaaatcagccaatcgtagcg 379 ||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||| Sbjct: 463 cgacgtcagcagcaggtacgccgacgcctgatccaggaggaaaatgagccaatcaaagcg 404 Query: 380 agcgcgggacttgaaggatggcattaggatggaggccacggaataggcggcagtgacggc 439 || | | || || |||||| || |||||||||||||| || ||||| || |||| ||| Sbjct: 403 agtgatgaacctgcaggatgacagcaggatggaggccaccgagtaggcagccgtgatggc 344 Query: 440 gttgatgcaaactaaatacttgaagcctgagaggttggagaagctgatctccccgtaggt 499 |||||| || || |||||| ||||||| ||||||| |||||| |||| |||||||||||| Sbjct: 343 gttgatccagaccaaatacctgaagccggagaggtcggagaacctgacctccccgtaggt 284 Query: 500 gtcatcggcttgcttgttggtgg 522 || || | ||||||||||||| Sbjct: 283 ctcgtccacctgcttgttggtgg 261
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 218 bits (110), Expect = 1e-53 Identities = 185/210 (88%) Strand = Plus / Plus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 6679793 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 6679852 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 6679853 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 6679912 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 6679913 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 6679972 Query: 320 cgatgtcaccagcaggtacgccgccgcctg 349 ||| |||| |||||||||||||| |||||| Sbjct: 6679973 cgacgtcagcagcaggtacgccgacgcctg 6680002 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 346 cctggtccaggaggaaaatcagccaatcgtagcgagcgcgggacttgaaggatggcatta 405 |||| |||||||||||||| |||||||| |||||| | | || || |||||| || | Sbjct: 6681191 cctgatccaggaggaaaatgagccaatcaaagcgagtgatgaacctgcaggatgacagca 6681250 Query: 406 ggatggaggccacggaataggcggcagtgacggcgttgatgcaaactaaatac 458 ||||||||||||| || ||||| || |||| ||||||||| || || |||||| Sbjct: 6681251 ggatggaggccaccgagtaggcagccgtgatggcgttgatccagaccaaatac 6681303 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 460 tgaagcctgagaggttggagaagctgatctccccgtaggtgtcatcggcttgcttgttgg 519 ||||||| ||||||| |||||| |||| |||||||||||| || || | |||||||||| Sbjct: 6681806 tgaagccggagaggtcggagaacctgacctccccgtaggtctcgtccacctgcttgttgg 6681865 Query: 520 tgg 522 ||| Sbjct: 6681866 tgg 6681868
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1131G07 Length = 133992 Score = 218 bits (110), Expect = 1e-53 Identities = 185/210 (88%) Strand = Plus / Plus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 846 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 905 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 906 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 965 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 966 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 1025 Query: 320 cgatgtcaccagcaggtacgccgccgcctg 349 ||| |||| |||||||||||||| |||||| Sbjct: 1026 cgacgtcagcagcaggtacgccgacgcctg 1055 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 346 cctggtccaggaggaaaatcagccaatcgtagcgagcgcgggacttgaaggatggcatta 405 |||| |||||||||||||| |||||||| |||||| | | || || |||||| || | Sbjct: 2244 cctgatccaggaggaaaatgagccaatcaaagcgagtgatgaacctgcaggatgacagca 2303 Query: 406 ggatggaggccacggaataggcggcagtgacggcgttgatgcaaactaaatac 458 ||||||||||||| || ||||| || |||| ||||||||| || || |||||| Sbjct: 2304 ggatggaggccaccgagtaggcagccgtgatggcgttgatccagaccaaatac 2356 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 460 tgaagcctgagaggttggagaagctgatctccccgtaggtgtcatcggcttgcttgttgg 519 ||||||| ||||||| |||||| |||| |||||||||||| || || | |||||||||| Sbjct: 2859 tgaagccggagaggtcggagaacctgacctccccgtaggtctcgtccacctgcttgttgg 2918 Query: 520 tgg 522 ||| Sbjct: 2919 tgg 2921
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 218 bits (110), Expect = 1e-53 Identities = 185/210 (88%) Strand = Plus / Plus Query: 140 gaagacccggaaggcggagacgagggagagcgcgacgaagcagagcagcgcggcggcctg 199 |||||||| ||||||||||| |||||||||||| | ||||||||| || |||||||| | Sbjct: 114168 gaagaccctgaaggcggagatgagggagagcgccatgaagcagaggagggcggcggcgtt 114227 Query: 200 cagcgccacggacacggtggccctgccgcagaaccgaccgaagtaggagcacacctcgcc 259 |||||||||||||||||||| ||||||||| || |||||||||||||||||||| || Sbjct: 114228 gagcgccacggacacggtggcggcgccgcagaagcggccgaagtaggagcacacctcccc 114287 Query: 260 ccacgacacctcccggtcgccctccctcgcgaggtacaccagctccgccgccgctgagca 319 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || Sbjct: 114288 ccacgacacctcccggtcgccctcccgcgccaggtacaccacctccgccgccgccgacgc 114347 Query: 320 cgatgtcaccagcaggtacgccgccgcctg 349 ||| |||| |||||||||||||| |||||| Sbjct: 114348 cgacgtcagcagcaggtacgccgacgcctg 114377 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 346 cctggtccaggaggaaaatcagccaatcgtagcgagcgcgggacttgaaggatggcatta 405 |||| |||||||||||||| |||||||| |||||| | | || || |||||| || | Sbjct: 115566 cctgatccaggaggaaaatgagccaatcaaagcgagtgatgaacctgcaggatgacagca 115625 Query: 406 ggatggaggccacggaataggcggcagtgacggcgttgatgcaaactaaatac 458 ||||||||||||| || ||||| || |||| ||||||||| || || |||||| Sbjct: 115626 ggatggaggccaccgagtaggcagccgtgatggcgttgatccagaccaaatac 115678 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 460 tgaagcctgagaggttggagaagctgatctccccgtaggtgtcatcggcttgcttgttgg 519 ||||||| ||||||| |||||| |||| |||||||||||| || || | |||||||||| Sbjct: 116181 tgaagccggagaggtcggagaacctgacctccccgtaggtctcgtccacctgcttgttgg 116240 Query: 520 tgg 522 ||| Sbjct: 116241 tgg 116243
>gb|AY107012.1| Zea mays PCO099293 mRNA sequence Length = 976 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Minus Query: 288 gcgaggtacaccagctccgccgccgctg 315 |||||||||| ||||||||||||||||| Sbjct: 565 gcgaggtacagcagctccgccgccgctg 538
>gb|AY596541.1| Saccharum officinarum clone SCCCLR1C04B02, complete sequence Length = 883 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 288 gcgaggtacaccagctccgccgccgc 313 |||||||||| ||||||||||||||| Sbjct: 461 gcgaggtacagcagctccgccgccgc 436
>emb|AL365272.20| Human DNA sequence from clone RP11-328C17 on chromosome 6 Contains the gene for mitogen-activated protein kinase phosphatase X (MKPX), the 5' end of the IRF4 gene for interferon regulatory factor 4 and 2 CpG islands, complete sequence Length = 132449 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 ttgaagcctgagaggttggag 479 ||||||||||||||||||||| Sbjct: 40818 ttgaagcctgagaggttggag 40838
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 175 cgaagcagagcagcgcggcggcctgcagc 203 ||||||| ||||||||| ||||||||||| Sbjct: 2962911 cgaagcacagcagcgcgccggcctgcagc 2962939
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 ggcctgcagcgccacggacac 214 ||||||||||||||||||||| Sbjct: 4984191 ggcctgcagcgccacggacac 4984211
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 agcagcgcggcggcctgcagc 203 ||||||||||||||||||||| Sbjct: 2873 agcagcgcggcggcctgcagc 2893
>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence Length = 192562 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 aggatggcattaggatggagg 414 ||||||||||||||||||||| Sbjct: 81284 aggatggcattaggatggagg 81264
>gb|M17434.1|RPFHP Rinderpest virus hemagglutinin gene, complete cds Length = 1952 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 tcagtgattgttatcatggat 52 ||||||||||||||||||||| Sbjct: 691 tcagtgattgttatcatggat 671
>dbj|D82982.1|RPFHAP Rinderpest virus genomic RNA for HA protein, complete cds Length = 1830 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 tcagtgattgttatcatggat 52 ||||||||||||||||||||| Sbjct: 671 tcagtgattgttatcatggat 651
>gb|AY655638.1| Menidia menidia TMO-4c4 gene, partial sequence Length = 497 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 acgacacctcccggtcgccctccc 285 ||||| |||||||||||||||||| Sbjct: 323 acgactcctcccggtcgccctccc 346
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 agcgcggcggcctgcagcgc 205 |||||||||||||||||||| Sbjct: 59687 agcgcggcggcctgcagcgc 59706
>gb|AY532606.1| Rock bream iridovirus strain RBIV-KOR-TY1 from South Korea, complete genome Length = 112080 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ggacacggtggccctgccgc 228 |||||||||||||||||||| Sbjct: 57876 ggacacggtggccctgccgc 57857
>ref|XM_414843.1| PREDICTED: Gallus gallus similar to 60S ribosomal protein L3-like (LOC416542), mRNA Length = 1303 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 467 tgagaggttggagaagctgatctc 490 ||||||||||||||||| |||||| Sbjct: 613 tgagaggttggagaagcagatctc 636
>emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chromosome 6 Contains the 3' end of the LPA gene for lipoprotein (Lp(a)) and a CpG island, complete sequence Length = 135751 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 caggaggaaaatcagccaat 372 |||||||||||||||||||| Sbjct: 132641 caggaggaaaatcagccaat 132622
>gb|AC008149.14| Homo sapiens 12 BAC RP11-394J1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96995 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 cactaatatcagtgattgtt 43 |||||||||||||||||||| Sbjct: 14300 cactaatatcagtgattgtt 14319
>gb|AY894343.1| Orange-spotted grouper iridovirus, complete genome Length = 112636 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ggacacggtggccctgccgc 228 |||||||||||||||||||| Sbjct: 58185 ggacacggtggccctgccgc 58166
>gb|AF263284.4| Homo sapiens chromosome 8 clone GS1-9J2 map 8q11-q13, complete sequence Length = 99592 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gccctgccgcagaaccgacc 238 |||||||||||||||||||| Sbjct: 7493 gccctgccgcagaaccgacc 7512
>gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, complete sequence Length = 187204 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gccctgccgcagaaccgacc 238 |||||||||||||||||||| Sbjct: 88468 gccctgccgcagaaccgacc 88487
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cggagacgagggagagcgcg 173 |||||||||||||||||||| Sbjct: 5043270 cggagacgagggagagcgcg 5043251 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cggagacgagggagagcgcg 173 |||||||||||||||||||| Sbjct: 5000618 cggagacgagggagagcgcg 5000599
>emb|BX929329.2| Gallus gallus finished cDNA, clone ChEST982j14 Length = 1303 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 467 tgagaggttggagaagctgatctc 490 ||||||||||||||||| |||||| Sbjct: 614 tgagaggttggagaagcagatctc 637
>emb|BX935844.1| Gallus gallus finished cDNA, clone ChEST163e11 Length = 1304 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 467 tgagaggttggagaagctgatctc 490 ||||||||||||||||| |||||| Sbjct: 614 tgagaggttggagaagcagatctc 637
>emb|AL732341.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0213E10, complete sequence Length = 26755 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 aggcggagacgagggagagc 170 |||||||||||||||||||| Sbjct: 23073 aggcggagacgagggagagc 23092
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 aggcggagacgagggagagc 170 |||||||||||||||||||| Sbjct: 7196 aggcggagacgagggagagc 7215
>gb|AY539385.1| Menidia menidia TMO-4c4 gene, partial sequence Length = 483 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 acgacacctcccggtcgccctccc 285 ||||| |||||||||||||||||| Sbjct: 323 acgactcctcccggtcgccctccc 346
>gb|AC141560.4| Mus musculus BAC clone RP23-425A5 from 12, complete sequence Length = 196665 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gcgggacttgaaggatggca 402 |||||||||||||||||||| Sbjct: 46340 gcgggacttgaaggatggca 46359 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,759,138 Number of Sequences: 3902068 Number of extensions: 3759138 Number of successful extensions: 78398 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78115 Number of HSP's gapped (non-prelim): 272 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)