>PACN3_HUMAN (Q9UKS6) Protein kinase C and casein kinase substrate in neurons|
           protein 3 (SH3 domain-containing protein 6511)
           (Endophilin I)
          Length = 424

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 330 LANSLHQFEKVCEDVDRVLRVQENGAATPKEXVVDAIVEEAKPPQVPPQDAGA 172
           +A +  QFE+   D  R +  +E G  +P E  + +IV        PPQ  G+
Sbjct: 292 MAMNWPQFEEWSLDTQRTISRKEKGGRSPDEVTLTSIVPTRDGTAPPPQSPGS 344

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 225 AIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKME 118
           A+ EE K  +  P +  A AA    PST   E+K E
Sbjct: 152 AVEEEKKEEEAAPAEPAAAAAEAAAPSTEVVEEKKE 187

>RGNEF_MOUSE (P97433) Rho-guanine nucleotide exchange factor (Rho-interacting|
           protein 2) (RhoGEF) (RIP2)
          Length = 1693

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -1

Query: 261 NGAATPKEXVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG*CVGMKTES 82
           +GAA  +E V +  +E  + P    +DA ++ +   GPS  + +D++ +D    G+K   
Sbjct: 295 SGAAETEEEVRN--LESGRSPSEEEEDAKSIKSQVDGPSEHEDQDRLALDRSFDGLKKSK 352

Query: 81  KPPS 70
             P+
Sbjct: 353 HVPA 356

>TNNT_DROME (P19351) Troponin T, skeletal muscle (Protein upheld) (Protein|
           intended thorax)
          Length = 397

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 264 ENGAATPKEXVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEID 112
           E   ++ +E VV+   EE KPPQ P +  G        P  +K +D+   D
Sbjct: 5   EEYTSSEEEEVVEETREETKPPQTPAEGEG-------DPEFIKRQDQKRSD 48

>EVX1_HUMAN (P49640) Homeobox even-skipped homolog protein 1 (EVX-1)|
          Length = 407

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 267 QENGAATPKEXVVDAIVEEAKPPQVPPQDAGAVAANGVGP 148
           +E G   P+E  VD +   A  P   PQ AGA A  G GP
Sbjct: 58  RERGGGGPEEEPVDGLAGSAAGPGAEPQVAGA-AMLGPGP 96

>TPIS_SYNY3 (Q59994) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 242

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -1

Query: 255 AATPKEXVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG*CVG 97
           AAT    V+  I E+    QV  Q  G+V AN V     +P    EIDG  VG
Sbjct: 177 AATEANRVIGLIREQLTNSQVTIQYGGSVNANNVDEIMAQP----EIDGALVG 225

>PHF22_RAT (Q68FR3) Integrator complex subunit 12 (PHD finger protein 22)|
          Length = 461

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 207 KPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG*CVGMK-TESKPPSV 67
           KPPQ P     +VA     P   KPE K++ +   +  K TE KP +V
Sbjct: 224 KPPQKPAPTVVSVAPTVKDPLVKKPETKLKQETTFLAFKRTEVKPSTV 271

>MATRX_MEASY (P36356) Matrix protein|
          Length = 300

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 222 IVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKME 118
           +VE++ PP  P   A      G G ST KPE+ ++
Sbjct: 8   VVEDSDPPGPPIGRASGSPPPGAGRSTAKPEELLK 42

>Y005_SYNY3 (Q55680) Hypothetical protein sll0005|
          Length = 681

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = -1

Query: 234 VVDAIVEEAKPPQVPP---QDAGAVA 166
           V+DA+VEE +PP++P    +D G V+
Sbjct: 19  VIDAVVEEVRPPRLPKSHLEDLGPVS 44

>PAR6G_HUMAN (Q9BYG4) Partitioning defective 6 homolog gamma (PAR-6 gamma)|
           (PAR6D)
          Length = 376

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 240 EXVVDAIVEEAKPPQVPPQDAGAVA-ANGVG 151
           + V++  +E A+PPQ P   AG+++  NG G
Sbjct: 300 DVVIEGTLEPARPPQTPGAPAGSLSRVNGAG 330

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3|
           homolog (Histone-lysine N-methyltransferase, H3 lysine-4
           specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 228 DAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG*CVGMKTESKPPS 70
           D  VE+ +PP  PP++ GA A +    +  +P  +   DG     +   KP S
Sbjct: 6   DKSVEQPQPPPPPPEEPGAPAPSPAA-ADKRPRGRPRKDGASPFQRARKKPRS 57

>PACN3_MOUSE (Q99JB8) Protein kinase C and casein kinase II substrate protein 3|
          Length = 424

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -1

Query: 330 LANSLHQFEKVCEDVDRVLRVQENGAATPKEXVVDAIVE----EAKPPQVP 190
           +A +  QFE+   D  R +  +E G  +P E  + +IV      A PPQ P
Sbjct: 292 MAMNWPQFEEWSLDTQRAISRKEKGGRSPDEVTLTSIVPTRDGTAPPPQSP 342

>BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomain-containing|
           FSH-like protein FSRG2)
          Length = 726

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 249 TPKEXVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG 109
           TP    + A   E+ PP   P+ A  VA    G   +KP  K   DG
Sbjct: 249 TPTTSAITASRSESPPPLSEPKQAKVVARRESGGRPIKPPKKDLEDG 295

>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)|
          Length = 726

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 249 TPKEXVVDAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG 109
           TP    + A   E+ PP   P+ A  VA    G   +KP  K   DG
Sbjct: 250 TPTTSAITASRSESPPPLSDPKQAKVVARRESGGRPIKPPKKDLEDG 296

>XPC_DROME (Q24595) DNA-repair protein complementing XP-C cells homolog|
           (Xeroderma pigmentosum group C-complementing protein
           homolog) (XPCDM) (Mutagen-sensitive 209 protein)
          Length = 1293

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = -1

Query: 348 KAASASLANSLHQFEKVCEDVDRVLRVQENGAATPKEXVVDAIVE--EAKPPQVPPQDAG 175
           K  +A L++S  + +KV    +   +VQ   ++  K      I E  ++K P+V P D  
Sbjct: 695 KEETAKLSSSKLEDKKVASPAETKTKVQ---SSLLKRVTTQNISESGDSKKPKVAPVDTF 751

Query: 174 AVAANGVGPSTVKP--EDKMEIDG 109
           +  A     +TVKP  E+K ++ G
Sbjct: 752 SPVAGRTRRATVKPKTEEKPQVVG 775

>MNAB_HUMAN (Q9HBD1) Membrane-associated nucleic acid-binding protein (RING|
           finger protein 164)
          Length = 1191

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = -1

Query: 351 DKAASASLANSLHQFEKVCEDVDRVLRVQENG--AATPKEXVVDAIVEE--AKPPQVPPQ 184
           + + S  ++ S     +  E V +V +V  NG  AA P     D++ E     PP+ P  
Sbjct: 500 ENSVSQLISRSTDSTLRALETVKKVGKVGANGQNAAGPS---ADSVTENKIGSPPKTPVS 556

Query: 183 DAGAVAANGVGPSTVKPE 130
           +   VAA   GPS V  E
Sbjct: 557 N---VAATSAGPSNVGTE 571

>GDIT_MOUSE (Q62160) Rho GDP-dissociation inhibitor 3 (Rho GDI 3) (Rho-GDI|
           gamma) (Rho-GDI2)
          Length = 225

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 282 RVLRVQENGAATPKEXVVDAIVEEAKPP 199
           RVL   ++G +TP + V+D IV E + P
Sbjct: 24  RVLLADKDGESTPSDEVLDEIVPEYQAP 51

>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2|
          Length = 891

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 255 AATPKEXVVDAIVEEAKPPQVP---PQDAGAVAANGVGPSTVKPEDKMEIDG 109
           AA+PK+  V      +KPP +P   P D+G        PS+  P  + E  G
Sbjct: 56  AASPKKETVAESAPSSKPPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPG 107

>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1708

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 354  GDKAASASLANSLHQFEKVCEDVDRVLRVQ 265
            GD+A S +L N + QF KVC   D   R +
Sbjct: 1110 GDEADSTTLMNLVMQFRKVCNHPDLFERAE 1139

>MCP6_SCHPO (Q10336) Meiotic coiled-coil protein 6|
          Length = 327

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 336 ASLANSLHQFEKVCEDVDRVLRVQENGAATPKEXV--VDAIVEEAKPP 199
           A L N  H F+++C+ + + L   EN ++T K+ +  ++ I+    PP
Sbjct: 257 ADLENQHHSFQQICQTLRKRL---ENDSSTTKQRLSKLEEIIRNRAPP 301

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3|
           homolog (Histone-lysine N-methyltransferase, H3 lysine-4
           specific MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 228 DAIVEEAKPPQVPPQDAGAVAANGVGPSTVKPEDKMEIDG*CVGMKTESKPPS 70
           D   E+ +PP  PP++ GA A +    +  +P  +   DG     +   KP S
Sbjct: 6   DRSAEQQQPPPAPPEEPGAPAPSPAA-ADKRPRGRPRKDGASPFQRARKKPRS 57

>LIN25_CAEEL (Q10573) Protein lin-25 (Abnormal cell lineage protein 25)|
          Length = 1139

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 357 CGDKAASASLANSLHQFEKVCEDVDRVLRVQENGAATPKEXVVDAIVEEAKP 202
           C    A +  +   HQ E +C D    LR  +  A T  E +++  +E+ KP
Sbjct: 182 CSSLLAFSEASEITHQLE-LCRDSFSKLRSPDKSATTLVEMLIERHIEKCKP 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,169,642
Number of Sequences: 219361
Number of extensions: 746470
Number of successful extensions: 2823
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2821
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)