| Clone Name | rbaal41i20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L10, full insert sequence Length = 790 Score = 165 bits (83), Expect = 2e-37 Identities = 206/246 (83%), Gaps = 1/246 (0%) Strand = Plus / Minus Query: 198 actgtacattgcaatgcgcgtatcttacataacgacacatctagctgctagccctttctg 257 ||||||||||||||| ||| | |||||||| | |||||| ||| | |||||||||||| Sbjct: 603 actgtacattgcaattcgcatctcttacatgatgacacacctaagcgatagccctttctg 544 Query: 258 ctccactctctgatcatcgntgccttcatggggctggtggagcctgcggttctgaggggt 317 || ||||| ||||| || |||| |||||||| || |||||||| || |||||||| | Sbjct: 543 ttctactctttgatcttcattgccatcatggggttgatggagcctacgattctgaggagc 484 Query: 318 tgacatctcctttttaaggctgatgaggatgtcctccattgtatgttccctttgccagtt 377 |||||||||||||| | || ||| |||||||| | |||||||||||| ||||||||||| Sbjct: 483 agacatctccttttttaagccgatcaggatgtcttgcattgtatgttctctttgccagtt 424 Query: 378 tccaagcatcgggaatcttctttggatcaaccattccagtttcttgattcacgcatgtca 437 |||||||| |||||| | |||| |||||||||||||||||||||||||| |||| || Sbjct: 423 accaagcatggggaatagac-ttggttcaaccattccagtttcttgattcacacatgaca 365 Query: 438 tattga 443 |||||| Sbjct: 364 tattga 359
>ref|XM_469523.1| Oryza sativa (japonica cultivar-group), mRNA Length = 486 Score = 149 bits (75), Expect = 9e-33 Identities = 168/198 (84%), Gaps = 1/198 (0%) Strand = Plus / Minus Query: 246 tagccctttctgctccactctctgatcatcgntgccttcatggggctggtggagcctgcg 305 |||||||||||| || ||||| ||||| || |||| |||||||| || |||||||| || Sbjct: 462 tagccctttctgttctactctttgatcttcattgccatcatggggttgatggagcctacg 403 Query: 306 gttctgaggggttgacatctcctttttaaggctgatgaggatgtcctccattgtatgttc 365 |||||||| | |||||||||||||| | || ||| |||||||| | |||||||||||| Sbjct: 402 attctgaggagcagacatctccttttttaagccgatcaggatgtcttgcattgtatgttc 343 Query: 366 cctttgccagtttccaagcatcgggaatcttctttggatcaaccattccagtttcttgat 425 ||||||||||| |||||||| |||||| | |||| |||||||||||||||||||||| Sbjct: 342 tctttgccagttaccaagcatggggaatagac-ttggttcaaccattccagtttcttgat 284 Query: 426 tcacgcatgtcatattga 443 |||| |||| |||||||| Sbjct: 283 tcacacatgacatattga 266
>gb|AY107839.1| Zea mays PCO143146 mRNA sequence Length = 1245 Score = 101 bits (51), Expect = 2e-18 Identities = 116/138 (84%) Strand = Plus / Minus Query: 249 ccctttctgctccactctctgatcatcgntgccttcatggggctggtggagcctgcggtt 308 |||||||||||| ||||| || || || |||||||||| || |||| |||||||| || Sbjct: 777 ccctttctgctctactctttggtcttcattgccttcatgaggttggtacagcctgcgatt 718 Query: 309 ctgaggggttgacatctcctttttaaggctgatgaggatgtcctccattgtatgttccct 368 ||| || |||||||||||| |||| | |||| | || ||||||||||| ||||||||||| Sbjct: 717 ctgtggagttgacatctccctttttaagctggtcagaatgtcctccatcgtatgttccct 658 Query: 369 ttgccagtttccaagcat 386 || ||| ||||||||||| Sbjct: 657 ttcccactttccaagcat 640 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 407 accattccagtttcttgattcacgcatgtcatattga 443 |||| |||||||||||| ||||| ||||||||||||| Sbjct: 524 accaatccagtttcttggttcacacatgtcatattga 488
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 93.7 bits (47), Expect = 5e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 283 tcatggggctggtggagcctgcggttctgaggggttgacatctcctttttaaggctgatg 342 |||||||| || |||||||| || |||||||| | |||||||||||||| | || ||| Sbjct: 28491075 tcatggggttgatggagcctacgattctgaggagcagacatctccttttttaagccgatc 28491016 Query: 343 aggatgtcctccattgtatgttccctttgccagtttccaagcatcgggaat 393 |||||||| | |||||||||||| ||||||||||| |||||||| |||||| Sbjct: 28491015 aggatgtcttgcattgtatgttctctttgccagttaccaagcatggggaat 28490965 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 407 accattccagtttcttgattcacgcatgtcatattga 443 ||||||||||||||||||||||| |||| |||||||| Sbjct: 28490867 accattccagtttcttgattcacacatgacatattga 28490831 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 198 actgtacattgcaatgcgcgtatcttacataacgacacatctagctgctagccctttctg 257 ||||||||||||||| ||| | |||||||| | |||||| ||| | |||||||||||| Sbjct: 28491482 actgtacattgcaattcgcatctcttacatgatgacacacctaagcgatagccctttctg 28491423 Query: 258 ctccactctctgatc 272 || ||||| ||||| Sbjct: 28491422 ttctactctttgatc 28491408
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 93.7 bits (47), Expect = 5e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 283 tcatggggctggtggagcctgcggttctgaggggttgacatctcctttttaaggctgatg 342 |||||||| || |||||||| || |||||||| | |||||||||||||| | || ||| Sbjct: 28582399 tcatggggttgatggagcctacgattctgaggagcagacatctccttttttaagccgatc 28582340 Query: 343 aggatgtcctccattgtatgttccctttgccagtttccaagcatcgggaat 393 |||||||| | |||||||||||| ||||||||||| |||||||| |||||| Sbjct: 28582339 aggatgtcttgcattgtatgttctctttgccagttaccaagcatggggaat 28582289 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 407 accattccagtttcttgattcacgcatgtcatattga 443 ||||||||||||||||||||||| |||| |||||||| Sbjct: 28582191 accattccagtttcttgattcacacatgacatattga 28582155 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 198 actgtacattgcaatgcgcgtatcttacataacgacacatctagctgctagccctttctg 257 ||||||||||||||| ||| | |||||||| | |||||| ||| | |||||||||||| Sbjct: 28582806 actgtacattgcaattcgcatctcttacatgatgacacacctaagcgatagccctttctg 28582747 Query: 258 ctccactctctgatc 272 || ||||| ||||| Sbjct: 28582746 ttctactctttgatc 28582732
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 93.7 bits (47), Expect = 5e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 283 tcatggggctggtggagcctgcggttctgaggggttgacatctcctttttaaggctgatg 342 |||||||| || |||||||| || |||||||| | |||||||||||||| | || ||| Sbjct: 85205 tcatggggttgatggagcctacgattctgaggagcagacatctccttttttaagccgatc 85146 Query: 343 aggatgtcctccattgtatgttccctttgccagtttccaagcatcgggaat 393 |||||||| | |||||||||||| ||||||||||| |||||||| |||||| Sbjct: 85145 aggatgtcttgcattgtatgttctctttgccagttaccaagcatggggaat 85095 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 407 accattccagtttcttgattcacgcatgtcatattga 443 ||||||||||||||||||||||| |||| |||||||| Sbjct: 84997 accattccagtttcttgattcacacatgacatattga 84961 Score = 46.1 bits (23), Expect = 0.10 Identities = 62/75 (82%) Strand = Plus / Minus Query: 198 actgtacattgcaatgcgcgtatcttacataacgacacatctagctgctagccctttctg 257 ||||||||||||||| ||| | |||||||| | |||||| ||| | |||||||||||| Sbjct: 85612 actgtacattgcaattcgcatctcttacatgatgacacacctaagcgatagccctttctg 85553 Query: 258 ctccactctctgatc 272 || ||||| ||||| Sbjct: 85552 ttctactctttgatc 85538
>gb|BT017181.1| Zea mays clone EL01N0369E04.c mRNA sequence Length = 822 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 394 cttctttggatcaaccattccagtttcttgattcacgcatgtcatattga 443 |||| |||||||||||||||| || || ||||| ||||||||||| |||| Sbjct: 467 cttccttggatcaaccattcctgtctcgtgattaacgcatgtcatgttga 418
>gb|AY104181.1| Zea mays PCO060230 mRNA sequence Length = 1061 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 394 cttctttggatcaaccattccagtttcttgattcacgcatgtcatattga 443 |||| |||||||||||||||| || || ||||| ||||||||||| |||| Sbjct: 586 cttccttggatcaaccattcctgtctcgtgattaacgcatgtcatgttga 537
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 278 tgccttcatggggctggtggag 299 |||||||||||||||||||||| Sbjct: 1697656 tgccttcatggggctggtggag 1697677
>gb|AC122214.4| Mus musculus BAC clone RP23-104J10 from chromosome 7, complete sequence Length = 176054 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 cctccattgtatgttcccttt 370 ||||||||||||||||||||| Sbjct: 129286 cctccattgtatgttcccttt 129266
>gb|AC155163.4| Mus musculus BAC clone RP24-341A18 from chromosome 8, complete sequence Length = 207406 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gccctttctgctccactctc 267 |||||||||||||||||||| Sbjct: 52366 gccctttctgctccactctc 52385
>gb|AC150858.4| Bos taurus BAC CH240-431L22 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 166138 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tgatattgctaaatgagggg 36 |||||||||||||||||||| Sbjct: 35507 tgatattgctaaatgagggg 35526
>gb|AY810971.1| Schistosoma japonicum SJCHGC06791 protein mRNA, partial cds Length = 970 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 16 ttgatattgctaaatgaggggtaaaaggttac 47 ||||||||||||||||| |||| |||||||| Sbjct: 559 ttgatattgctaaatgatgggttcaaggttac 528
>gb|AY318113.1| Mus musculus olfactory receptor Olfr926 (Olfr926) gene, complete cds Length = 927 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggaatcttctttggatcaa 407 |||||||||||||||||||| Sbjct: 735 gggaatcttctttggatcaa 754
>gb|AY073279.1| Mus musculus olfactory receptor MOR171-8 gene, complete cds Length = 927 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggaatcttctttggatcaa 407 |||||||||||||||||||| Sbjct: 735 gggaatcttctttggatcaa 754
>gb|AF401037.1| Lactobacillus sakei phosphoribosylpyrophosphate amidotransferase (purF) gene, partial cds; phosphoribosyl-aminoimidazole synthetase (purM) gene, complete cds; and phosphoribosylglycinamide formyltransferase (purN) gene, partial cds Length = 2299 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gactagcaactgtcaaatta 141 |||||||||||||||||||| Sbjct: 1471 gactagcaactgtcaaatta 1452
>emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in linkage group 16, complete sequence Length = 256605 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 atgatttcctcctgggtttc 162 |||||||||||||||||||| Sbjct: 88994 atgatttcctcctgggtttc 88975
>emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in linkage group 16, complete sequence Length = 191052 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 atgatttcctcctgggtttc 162 |||||||||||||||||||| Sbjct: 94256 atgatttcctcctgggtttc 94237
>dbj|AK080940.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430214H24 product:nuclear factor I/X, full insert sequence Length = 2751 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 gccctttctgctccactctc 267 |||||||||||||||||||| Sbjct: 1182 gccctttctgctccactctc 1163
>gb|AC079811.6| Homo sapiens BAC clone CTD-2502L6 from 2, complete sequence Length = 130618 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 tgctagccctttctgctcca 262 |||||||||||||||||||| Sbjct: 27830 tgctagccctttctgctcca 27811
>gb|AF282291.1|AF282291 Mus musculus odorant receptor K42 gene, complete cds Length = 927 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggaatcttctttggatcaa 407 |||||||||||||||||||| Sbjct: 735 gggaatcttctttggatcaa 754
>ref|NM_146815.1| Mus musculus olfactory receptor 926 (Olfr926), mRNA Length = 927 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggaatcttctttggatcaa 407 |||||||||||||||||||| Sbjct: 735 gggaatcttctttggatcaa 754
>gb|AC073947.46| Mus musculus strain C57BL/6J chromosome 9 clone rp23-80d20, complete sequence Length = 247089 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gggaatcttctttggatcaa 407 |||||||||||||||||||| Sbjct: 232769 gggaatcttctttggatcaa 232750
>emb|BX001066.14| Mouse DNA sequence from clone RP23-463P1 on chromosome 4, complete sequence Length = 195216 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaccactgtgcaaactgaa 65 |||||||||||||||||||| Sbjct: 129690 acaccactgtgcaaactgaa 129671
>gb|AC006963.4|AC006963 Homo sapiens PAC clone RP1-278D1 from X, complete sequence Length = 88215 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 tccattgtatgttccctttg 371 |||||||||||||||||||| Sbjct: 14515 tccattgtatgttccctttg 14496
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gactagcaactgtcaaatta 141 |||||||||||||||||||| Sbjct: 665403 gactagcaactgtcaaatta 665384
>emb|CT025680.8| Mouse DNA sequence from clone RP24-84H10 on chromosome 9, complete sequence Length = 243795 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gggaatcttctttggatcaa 407 |||||||||||||||||||| Sbjct: 171271 gggaatcttctttggatcaa 171252
>emb|AL772344.4| Mouse DNA sequence from clone RP23-235J15 on chromosome 4, complete sequence Length = 223771 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaccactgtgcaaactgaa 65 |||||||||||||||||||| Sbjct: 65717 acaccactgtgcaaactgaa 65698
>emb|AL671977.8| Mouse DNA sequence from clone RP23-171A16 on chromosome X, complete sequence Length = 193108 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 tgcaaactgaataacgaagtcatt 78 |||||||||||||| ||||||||| Sbjct: 186888 tgcaaactgaataaagaagtcatt 186911
>gb|AC145556.4| Mus musculus BAC clone RP23-308E7 from chromosome 8, complete sequence Length = 178400 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gccctttctgctccactctc 267 |||||||||||||||||||| Sbjct: 178072 gccctttctgctccactctc 178091 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,208,066 Number of Sequences: 3902068 Number of extensions: 4208066 Number of successful extensions: 85896 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85743 Number of HSP's gapped (non-prelim): 151 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)