ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41i12 |
|---|---|
| Clone Library Name | barley_pub |
>SCRL2_ORYSA (Q5QNA6) SCAR-like protein 2| Length = 1334 Score = 83.6 bits (205), Expect = 1e-16 Identities = 44/56 (78%), Positives = 47/56 (83%) Frame = -1 Query: 384 KTFNLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVASDEGGDDXNWSDI 217 KTFNLR N SKTNTS + +TANSSVVAILEK NAIRQAVASDEGGDD +WSDI Sbjct: 1282 KTFNLRRTNASKTNTS---SPTTANSSVVAILEKANAIRQAVASDEGGDDDSWSDI 1334
>SCAR1_ARATH (Q6AWX6) Protein SCAR1 (AtSCAR1) (Protein WAVE1)| Length = 821 Score = 52.4 bits (124), Expect = 3e-07 Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Frame = -1 Query: 384 KTFNLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVASDEG-GDDXNWSD 220 K FNLR +KT++S E+T N+++ ILEK N+IRQAVASD+G G+ WSD Sbjct: 767 KQFNLRRVVRTKTSSS----ETTMNTNISVILEKANSIRQAVASDDGEGESDTWSD 818
>SCAR3_ARATH (Q9LP46) Protein SCAR3 (AtSCAR3) (Protein WAVE2)| Length = 1020 Score = 50.4 bits (119), Expect = 1e-06 Identities = 24/53 (45%), Positives = 35/53 (66%) Frame = -1 Query: 378 FNLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVASDEGGDDXNWSD 220 FNLR + T+++ +T+ N+ + AILEK N+IRQAVAS +G + WSD Sbjct: 967 FNLRPVVMTTTSSATATTDPIINTKISAILEKANSIRQAVASKDGDESDTWSD 1019
>SCRL1_ORYSA (Q84TX2) SCAR-like protein 1| Length = 2097 Score = 47.0 bits (110), Expect = 1e-05 Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Frame = -1 Query: 384 KTFNLRXXNGSKTNT-SXQSTESTANSSVVAILEKTNAIRQAVASDEGGDDXNWSD 220 KTFNL+ + +K T ST N V AI+EK NAIRQAV SD+ D NWS+ Sbjct: 2039 KTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIEKANAIRQAVGSDD-EDGDNWSE 2093
>SCAR4_ARATH (Q5XPJ6) Protein SCAR4 (AtSCAR4) (Protein WAVE3)| Length = 1170 Score = 39.3 bits (90), Expect = 0.002 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = -1 Query: 384 KTFNLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVA-SDEGGDDXNWSD 220 K+FNLR + S + Q N V AILEK N +RQA+A SD+ D +WS+ Sbjct: 1116 KSFNLRPADASG-RPNFQVAVPKTNLKVAAILEKANTLRQAMAGSDDEHDSDSWSE 1170
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 31.6 bits (70), Expect = 0.48 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = -1 Query: 375 NLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVASDEGGDDXNWSDIN*ECICQ 196 NLR S+ T + + VA+L + Q +A + GDD D+ C Sbjct: 3109 NLRLGKVSQARTQVKGVGQNLTYTTVALLPVLTTLFQHIAQHQFGDDVILDDVQVSCYRT 3168 Query: 195 TFSVYATST 169 S+Y+ T Sbjct: 3169 LCSIYSLGT 3177
>DMD_MOUSE (P11531) Dystrophin| Length = 3678 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = +1 Query: 133 RKRCYSHFHSSSCTSCIYRKGLAYAFSVDIAPVXIITPLVTGHSLSDCIRLLQN 294 R R HF+ C SC + +A + V TP +G + D ++L+N Sbjct: 3318 RYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKN 3371
>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5037 Score = 31.6 bits (70), Expect = 0.48 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = -1 Query: 375 NLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVASDEGGDDXNWSDIN*ECICQ 196 NLR S+ T + + VA+L + Q +A + GDD D+ C Sbjct: 3109 NLRLGKVSQARTQVKGVGQNLTYTTVALLPVLTTLFQHIAQHQFGDDVILDDVQVSCYRT 3168 Query: 195 TFSVYATST 169 S+Y+ T Sbjct: 3169 LCSIYSLGT 3177
>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5035 Score = 31.6 bits (70), Expect = 0.48 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = -1 Query: 375 NLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVASDEGGDDXNWSDIN*ECICQ 196 NLR S+ T + + VA+L + Q +A + GDD D+ C Sbjct: 3110 NLRLGKVSQARTQVKGVGQNLTYTTVALLPVLTTLFQHIAQHQFGDDVILDDVQVSCYRT 3169 Query: 195 TFSVYATST 169 S+Y+ T Sbjct: 3170 LCSIYSLGT 3178
>DMD_CHICK (P11533) Dystrophin| Length = 3660 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = +1 Query: 133 RKRCYSHFHSSSCTSCIYRKGLAYAFSVDIAPVXIITPLVTGHSLSDCIRLLQN 294 R R HF+ C SC + +A + V TP +G + D ++L+N Sbjct: 3322 RYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKN 3375
>DMD_CANFA (O97592) Dystrophin| Length = 3680 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = +1 Query: 133 RKRCYSHFHSSSCTSCIYRKGLAYAFSVDIAPVXIITPLVTGHSLSDCIRLLQN 294 R R HF+ C SC + +A + V TP +G + D ++L+N Sbjct: 3320 RYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKN 3373
>DMD_HUMAN (P11532) Dystrophin| Length = 3685 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = +1 Query: 133 RKRCYSHFHSSSCTSCIYRKGLAYAFSVDIAPVXIITPLVTGHSLSDCIRLLQN 294 R R HF+ C SC + +A + V TP +G + D ++L+N Sbjct: 3325 RYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKN 3378
>DMD_PIG (Q5GN48) Dystrophin| Length = 3674 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = +1 Query: 133 RKRCYSHFHSSSCTSCIYRKGLAYAFSVDIAPVXIITPLVTGHSLSDCIRLLQN 294 R R HF+ C SC + +A + V TP +G + D ++L+N Sbjct: 3314 RYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKN 3367
>YJW5_YEAST (P40889) Hypothetical ATP-dependent helicase YJL225C (EC 3.6.1.-)| Length = 1758 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -1 Query: 375 NLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVASDEGGDDXN 229 N + +NTS +TEST +++ E TNA + A+ +G + N Sbjct: 1326 NATTTESTNSNTSAATTESTNSNTSATTTESTNASAKEDANKDGNAEDN 1374
>YIR7_YEAST (P40434) Hypothetical ATP-dependent helicase YIL177C (EC 3.6.1.-)| Length = 1758 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -1 Query: 375 NLRXXNGSKTNTSXQSTESTANSSVVAILEKTNAIRQAVASDEGGDDXN 229 N + +NTS +TEST +++ E TNA + A+ +G + N Sbjct: 1326 NATTTESTNSNTSAATTESTNSNTSATTTESTNASAKEDANKDGNAEDN 1374
>EPA4A_XENLA (Q91845) Ephrin type-A receptor 4-A precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor SEK-1) (xSEK-1) Length = 986 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 30 C*NDLTSLQP*GSKIHYHELKKG*KTELQYLITMKKKVLFTFSLF 164 C +DLT +P GS +HY + G KT + ++ +TF ++ Sbjct: 369 CGSDLTRCRPCGSGVHYSPQQNGLKTTKVSITDLQAHTNYTFEVW 413
>UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP1) (DRP)| Length = 3433 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/58 (24%), Positives = 24/58 (41%) Frame = +1 Query: 133 RKRCYSHFHSSSCTSCIYRKGLAYAFSVDIAPVXIITPLVTGHSLSDCIRLLQNCYNA 306 R R HF+ C SC + A + V P +G + D ++L+N + + Sbjct: 3082 RYRSLKHFNYDVCQSCFFSGRTAKGHKLHYPMVEYCIPTTSGEDVRDFTKVLKNKFRS 3139
>EPA4B_XENLA (Q91694) Ephrin type-A receptor 4-B precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor PAG) (Pagliaccio) Length = 985 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +3 Query: 30 C*NDLTSLQP*GSKIHYHELKKG*KTELQYLITMKKKVLFTFSLFIL 170 C +DLT P GS +HY + G KT + ++ +TF ++ + Sbjct: 369 CGSDLTRCSPCGSGVHYSPQQNGLKTTKVSINDLQAHTNYTFEVWAI 415
>CP3A2_RAT (P05183) Cytochrome P450 3A2 (EC 1.14.14.1) (CYPIIIA2) (P450-PCN2)| (P450/6-beta-A) (Testosterone 6-beta-hydroxylase) Length = 504 Score = 28.1 bits (61), Expect = 5.4 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +3 Query: 237 HHPPRHWPQPVGLH 278 HH P+HWP+P H Sbjct: 403 HHDPQHWPKPEEFH 416 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,482,204 Number of Sequences: 219361 Number of extensions: 870140 Number of successful extensions: 2259 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2257 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
