ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha) 30 2.1
2SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3 30 2.1
3VPS_PSINU (Q9SLX9) Phloroisovalerophenone synthase (EC 2.3.1.156... 29 2.7
4YAWB_SCHPO (Q10185) Probable ATP-dependent permease C3F10.11c 29 2.7
5TGM7_HUMAN (Q96PF1) Protein-glutamine gamma-glutamyltransferase ... 29 2.7
6ENDD1_HUMAN (O94919) Endonuclease domain-containing 1 protein pr... 28 4.6
7YM80_YEAST (Q04019) Hypothetical 23.2 kDa protein in ZRC1-FAA4 i... 28 4.6
8GEM_PONPY (Q5R541) GTP-binding protein GEM 28 4.6
9GEM_HUMAN (P55040) GTP-binding protein GEM (GTP-binding mitogen-... 28 4.6
10SC6A9_HUMAN (P48067) Sodium- and chloride-dependent glycine tran... 28 7.9
11ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hy... 28 7.9
12GTR11_HUMAN (Q9BYW1) Solute carrier family 2, facilitated glucos... 28 7.9

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  RNSSKQTWRTPETRRHTNGRSHQHMHKPRNGS 157
           R+ S+   R    RR+T  RSH H H+ R+ S
Sbjct: 53  RSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRS 84



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>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 141 LCIC*CDRPFVCRRVSGVRHVCLLLFLPSVLFFCSLLCMYVCMY 10
           +C+C C    +C   S   +VC++         C  +C+YVC+Y
Sbjct: 376 VCVCVCMYVCMCVMESACVYVCVM----ESACVCVCMCVYVCVY 415



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>VPS_PSINU (Q9SLX9) Phloroisovalerophenone synthase (EC 2.3.1.156)|
           (Valerophenone synthase)
           (3-methyl-1-(trihydroxyphenyl)butan-1-one synthase)
          Length = 406

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 42  KRKAHLEETAASKHGELRKH----VDIRMDGHINICTSRGTVAADDAKTGATEPSGGI 203
           KR+ H+ E     H  +R +    +D+R D  +      G VAAD+A     +P   I
Sbjct: 74  KRRMHINEDILEAHPSIRSYHDNSLDVRQDMLVEEVPKLGKVAADNAIAEWGQPKSNI 131



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>YAWB_SCHPO (Q10185) Probable ATP-dependent permease C3F10.11c|
          Length = 1478

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 75  LLLFLPSVLFFCSLLCMYVCMYV 7
           +L  +PS+ FFCSL+C+   +YV
Sbjct: 145 MLNVVPSITFFCSLVCLLAEIYV 167



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>TGM7_HUMAN (Q96PF1) Protein-glutamine gamma-glutamyltransferase Z (EC|
           2.3.2.13) (TGase Z) (TGZ) (TG(Z)) (Transglutaminase 7)
          Length = 710

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 260 KCRYVRRRXPPPANALWLLDPTAWFSGSSLRIICCYRSSACAYVDVTVHSYVD 102
           +C  +R+  PP  N   +LDPT   + S L   CC  +S  A  +  VH   D
Sbjct: 342 ECWMIRKDLPPGYNGWQVLDPTPQQTSSGL--FCCGPASVKAIREGDVHLAYD 392



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>ENDD1_HUMAN (O94919) Endonuclease domain-containing 1 protein precursor (EC|
           3.1.30.-)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 173 LRIICCYRSSACAYVDVTVHSYVDV--FPEFAMFA 75
           LRI+CC   + C  + + V   VDV  FP + M A
Sbjct: 413 LRILCCLLKAICRVLSIPVRVLVDVATFPVYTMGA 447



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>YM80_YEAST (Q04019) Hypothetical 23.2 kDa protein in ZRC1-FAA4 intergenic|
           region
          Length = 206

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 69  LFLPSVLFFCSLLCMYVCMYV 7
           +++P+  +  + LCMYVCMYV
Sbjct: 103 IYVPAQRYNSTRLCMYVCMYV 123



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>GEM_PONPY (Q5R541) GTP-binding protein GEM|
          Length = 296

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 44  KKSTLGRNSSKQTWRTPETRRHTNGRSHQHMHKPRNGSSR*CEDWSH*TKRW 199
           ++ T+G    +Q W  P   RH   +   H +  RN  S   ED  H  + W
Sbjct: 9   RQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED--HCRRSW 58



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>GEM_HUMAN (P55040) GTP-binding protein GEM (GTP-binding mitogen-induced|
           T-cell protein) (RAS-like protein KIR)
          Length = 296

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 44  KKSTLGRNSSKQTWRTPETRRHTNGRSHQHMHKPRNGSSR*CEDWSH*TKRW 199
           ++ T+G    +Q W  P   RH   +   H +  RN  S   ED  H  + W
Sbjct: 9   RQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED--HCRRSW 58



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>SC6A9_HUMAN (P48067) Sodium- and chloride-dependent glycine transporter 1|
           (GlyT1) (GlyT-1) (Solute carrier family 6 member 9)
          Length = 692

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = -2

Query: 224 ANALWLLDPTAWFSGSSLRIICCYRSSACAYVDVTVHSYVDVFPEFAM---FACCCFFQV 54
           A   WLL    + +  SL +I C    A  Y+    + + + F +  M   F    FFQ+
Sbjct: 505 AGIYWLLLMDNYAASFSLVVISCIMCVAIMYI----YGHRNYFQDIQMMLGFPPPLFFQI 560

Query: 53  CFSFARXYVCMYVCMY 6
           C+ F    +  ++ ++
Sbjct: 561 CWRFVSPAIIFFILVF 576



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>ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)|
           (Aconitase)
          Length = 888

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 52  HTWKKQQQANMANSGNTSTYEWTVTSTYAQ 141
           H +   Q+ N   + N+  Y+W   STY Q
Sbjct: 611 HVFSDSQKWNQIETENSKNYQWNQVSTYIQ 640



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>GTR11_HUMAN (Q9BYW1) Solute carrier family 2, facilitated glucose transporter|
           member 11 (Glucose transporter type 11) (Glucose
           transporter type 10)
          Length = 496

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 171 SHHLLLPFLGLCIC 130
           SH L +PFLG+C+C
Sbjct: 434 SHFLYVPFLGVCVC 447


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,591,227
Number of Sequences: 219361
Number of extensions: 829020
Number of successful extensions: 2659
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2642
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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