ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin,... 446 e-122
2dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd 446 e-122
3gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrins... 297 1e-77
4gb|AC185988.2| Pan troglodytes BAC clone CH251-398L15 from chrom... 42 0.93
5emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chr... 42 0.93
6emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on ch... 42 0.93
7gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete... 42 0.93
8gb|AC119070.3| Homo sapiens BAC clone RP11-164M13 from 4, comple... 42 0.93
9emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chr... 40 3.7
10emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chr... 40 3.7
11gb|AC010197.7| Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (R... 40 3.7
12gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, compl... 40 3.7

>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds
          Length = 1318

 Score =  446 bits (225), Expect = e-122
 Identities = 229/231 (99%)
 Strand = Plus / Minus

                                                                        
Query: 35   agcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactccg 94
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 agcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactccg 1201

                                                                        
Query: 95   gaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacggt 154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 gaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacggt 1141

                                                                        
Query: 155  agcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccata 214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 agcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccata 1081

                                                               
Query: 215  gcgcattggctggaggcggncttcttcttcgcacatatctacacttnagtg 265
            ||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 1080 gcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtg 1030



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>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd
          Length = 1251

 Score =  446 bits (225), Expect = e-122
 Identities = 229/231 (99%)
 Strand = Plus / Minus

                                                                        
Query: 35   agcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactccg 94
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 agcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactccg 1121

                                                                        
Query: 95   gaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacggt 154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 gaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacggt 1061

                                                                        
Query: 155  agcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccata 214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 agcagcagatgatgcgaagactggagccactgaaccaagcggtgggatcgagcagccata 1001

                                                               
Query: 215  gcgcattggctggaggcggncttcttcttcgcacatatctacacttnagtg 265
            ||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 1000 gcgcattggctggaggcggccttcttcttcgcacatatctacacttcagtg 950



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>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA,
            complete cds
          Length = 1235

 Score =  297 bits (150), Expect = 1e-77
 Identities = 203/220 (92%), Gaps = 6/220 (2%)
 Strand = Plus / Minus

                                                                        
Query: 50   agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaaacacgtcgacat 109
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 1145 agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaa-cacgtcgacgt 1087

                                                                        
Query: 110  acgaatggacggtcacatcaacatatgcacaagccgaggaacggtagcagcagatgatgc 169
            ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1086 acgaatggacggtcacatcgacatatgcacaagccgaggaacggtagcagctgatgatgc 1027

                                                                        
Query: 170  gaagactggagccactga-----accaagcggtgggatcgagcagccatagcgcattggc 224
             |||||||||||||||||     || |||  ||||||||||||| |||||||||||| ||
Sbjct: 1026 aaagactggagccactgaacaggacaaaggtgtgggatcgagcaaccatagcgcatttgc 967

                                                    
Query: 225  tggaggcggncttcttcttcgcacatatctacacttnagt 264
            ||||||||| |||||||||||||||||||||||||| |||
Sbjct: 966  tggaggcggccttcttcttcgcacatatctacacttcagt 927



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>gb|AC185988.2| Pan troglodytes BAC clone CH251-398L15 from chromosome 6, complete
              sequence
          Length = 148530

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 43     aaagaaaagcacacttggaagaaac 67
              |||||||| ||||||||||||||||
Sbjct: 110966 aaagaaaaacacacttggaagaaac 110990



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>emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 79387

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 43    aaagaaaagcacacttggaagaaac 67
             ||||||||| |||||||||||||||
Sbjct: 40318 aaagaaaagtacacttggaagaaac 40342



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>emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on chromosome 6, complete
             sequence
          Length = 95430

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 43    aaagaaaagcacacttggaagaaac 67
             |||||||| ||||||||||||||||
Sbjct: 35576 aaagaaaaacacacttggaagaaac 35552



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>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence
          Length = 127223

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   ggtcacatcaacatatgcaca 140
             |||||||||||||||||||||
Sbjct: 33938 ggtcacatcaacatatgcaca 33958



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>gb|AC119070.3| Homo sapiens BAC clone RP11-164M13 from 4, complete sequence
          Length = 34461

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    aagaaaagcacacttggaaga 64
             |||||||||||||||||||||
Sbjct: 18083 aagaaaagcacacttggaaga 18063



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>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete
             sequence
          Length = 149684

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   tcacatcaacatatgcacaa 141
             ||||||||||||||||||||
Sbjct: 78375 tcacatcaacatatgcacaa 78394



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>emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chromosome 13 Contains the 3'
              end of the gene for progesterone-induced blocking factor 1
              (PIBF1), a proteasome (prosome, macropain) 26S subunit,
              non-ATPase, 10 (PSMD10) pseudogene, the KLF5 gene for
              Kruppel-like factor 5 (intestinal)(CKLF, IKLF, BTEB2), a
              fatty acid binding protein 5 (psoriasis-associated)
              (FABP5)(EFABP, E-FABP, PAFABP, PA-FABP) pseudogene and a
              CpG island, complete sequence
          Length = 199882

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ctggagccactgaaccaagc 194
              ||||||||||||||||||||
Sbjct: 183049 ctggagccactgaaccaagc 183030



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>gb|AC010197.7| Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 151011

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    aagaaaagcacacttggaag 63
             ||||||||||||||||||||
Sbjct: 79101 aagaaaagcacacttggaag 79120



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>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence
          Length = 158692

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    aaagaaaagcacacttggaagaaa 66
             ||||||||| ||||||||||||||
Sbjct: 56776 aaagaaaagtacacttggaagaaa 56799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,839,697
Number of Sequences: 3902068
Number of extensions: 1839697
Number of successful extensions: 32507
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32491
Number of HSP's gapped (non-prelim): 15
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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