ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41i06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 9e-74
2gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genom... 86 2e-13
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 2e-13
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
5gb|AY109205.1| Zea mays PCO074546 mRNA sequence 86 2e-13
6emb|CT863711.2| Medicago truncatula chromosome 5 clone mth2-152j... 58 4e-05
7gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
8gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
14dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
15dbj|AP003207.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
16dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
17dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
18dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
19dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
20gb|AC097263.6| Homo sapiens X BAC RP11-298C3 (Roswell Park Cance... 44 0.57
21gb|AE017263.1| Mesoplasma florum L1 complete genome 42 2.3
22gb|DQ483811.1| Gymnogyps californianus clone 234F microsatellite... 42 2.3
23gb|DQ483782.1| Gymnogyps californianus clone 205F microsatellite... 42 2.3
24gb|AC113598.8| Mus musculus chromosome 14, clone RP23-476N23, co... 42 2.3
25emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chr... 42 2.3
26gb|AC114772.5| Homo sapiens BAC clone RP11-427H3 from 2, complet... 42 2.3
27ref|NM_184794.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.9
28gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 40 8.9
29gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.9
30gb|AC120176.7| Mus musculus chromosome 18, clone RP24-494J20, co... 40 8.9
31gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome ... 40 8.9
32gb|DQ158856.1| Bigelowiella natans nucleomorph chromosome 1, par... 40 8.9
33ref|XM_572328.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 8.9
34ref|XM_572329.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 8.9
35gb|AC121595.3| Mus musculus BAC clone RP23-299A12 from chromosom... 40 8.9
36gb|AC121781.3| Mus musculus BAC clone RP23-363D24 from chromosom... 40 8.9
37gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 40 8.9
38gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, comple... 40 8.9
39ref|XM_718699.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.9
40gb|AC091783.9| Genomic sequence for Mus musculus, clone RP23-16G... 40 8.9
41emb|AL139009.14| Human DNA sequence from clone RP5-976H8 on chro... 40 8.9
42ref|XM_778912.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.9
43emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on ch... 40 8.9
44emb|BX005124.7| Zebrafish DNA sequence from clone CH211-284A16 i... 40 8.9
45gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome... 40 8.9
46gb|AF511037.1| Enterococcus faecium plasmid pEFR, complete sequence 40 8.9
47gb|AC115837.1| Homo sapiens chromosome 8, clone RP11-730G20, com... 40 8.9
48gb|AC022905.7| Homo sapiens chromosome 8, clone RP11-656G20, com... 40 8.9
49gb|AC163646.2| Mus musculus BAC clone RP23-207D1 from chromosome... 40 8.9
50gb|AF380336.1|AF380336 Lactococcus lactis plasmid pCRL291.1, com... 40 8.9
51gb|AC093865.2| Homo sapiens BAC clone RP11-560C24 from 2, comple... 40 8.9
52gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O1... 40 8.9
53gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 40 8.9
54gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic ... 40 8.9
55gb|AF177168.1|AF177168 Streptococcus thermophilus plasmid pER36,... 40 8.9
56gb|AF177167.1|AF177167 Streptococcus thermophilus plasmid pER35,... 40 8.9
57dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
58gb|AC155922.1| Mus musculus BAC clone RP24-501E5 from 12, comple... 40 8.9
59emb|BX640591.4| Zebrafish DNA sequence from clone DKEY-39A18 in ... 40 8.9
60gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromos... 40 8.9
61gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome 40 8.9
62emb|CT030739.10| Mouse DNA sequence from clone RP24-496K8 on chr... 40 8.9
63emb|BX005240.7| Mouse DNA sequence from clone RP23-185M16 on chr... 40 8.9
64gb|M55616.1|MUSPROTA Mus musculus mouse mast cell protease-4 gen... 40 8.9 
>dbj|AK111437.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A03, full
            insert sequence
          Length = 1587

 Score =  285 bits (144), Expect = 9e-74
 Identities = 306/360 (85%)
 Strand = Plus / Minus

                                                                        
Query: 140  agcagcttgcagagcatttgccttctcggcagccactgaagcgtctgcacctctgccctc 199
            |||||| || |||||||||||||| ||||  || |||||||| |||||| ||||||| | 
Sbjct: 1477 agcagcctgtagagcatttgccttttcggatgcgactgaagcatctgcagctctgccatg 1418

                                                                        
Query: 200  catcgtgtatgctttctccagcaagcgccacaagaaaggcgcgccctgtcgtttgctgat 259
            ||  | |||||| ||||||||||||||||||||||| || || |||| |||||| || ||
Sbjct: 1417 caatgagtatgccttctccagcaagcgccacaagaagggtgcaccctctcgtttcctaat 1358

                                                                        
Query: 260  ttgtttgacgagcagctcaattgctgtagacgtctctccagcatttaataagacagtgta 319
            ||||||  |||||| |||||||||| | ||  ||||||| | ||||| ||  ||||||||
Sbjct: 1357 ttgtttctcgagcacctcaattgctctggaactctctccggtatttattagcacagtgta 1298

                                                                        
Query: 320  ccaaacttcattgaagacgtccacttgttcatccgatgcgccaatcattttatagctaag 379
            |||||||||||||||||| |||||||| ||||| ||||| |||||||||||| | || ||
Sbjct: 1297 ccaaacttcattgaagacatccacttgctcatctgatgccccaatcattttacaactgag 1238

                                                                        
Query: 380  cccatcgaaatctggacccagggtgtcaaacaccgccttgtgctctccttttccatattt 439
              |||||||||||||||||| | ||||||| ||   ||||||||||||||||||||||| 
Sbjct: 1237 tgcatcgaaatctggacccaagatgtcaaagactttcttgtgctctccttttccatattc 1178

                                                                        
Query: 440  ataaacagcatctgctagctgaattgccttgtgcatcacttgctgtcttttcgtgtccat 499
            ||| ||||| ||||||||||| |||||||| ||||||||||||||| |||| ||||||||
Sbjct: 1177 atacacagcctctgctagctggattgccttttgcatcacttgctgtttttttgtgtccat 1118



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 569  tgcccataatataagtaaatcaaggagccattccgcatgccaaatggactcattcttaag 628
            ||||||||||| ||||| |||||||||||||||| ||||||| ||   ||||||| ||||
Sbjct: 1048 tgcccataatacaagtagatcaaggagccattccacatgccatattttctcattcgtaag 989

                          
Query: 629  atcatctagcaatg 642
              ||||||||||||
Sbjct: 988  tgcatctagcaatg 975
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>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete
             sequence
          Length = 150155

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                         
Query: 382   catcgaaatctggacccagggtgtcaaacaccgccttgtgctctccttttccatatttat 441
             |||||||||||||||||| | ||||||| ||   ||||||||||||||||||||||| ||
Sbjct: 48389 catcgaaatctggacccaagatgtcaaagactttcttgtgctctccttttccatattcat 48330

                                
Query: 442   aaacagcatctgctagctg 460
             | ||||| |||||||||||
Sbjct: 48329 acacagcctctgctagctg 48311



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 312   acagtgtaccaaacttcattgaagacgtccacttgttcatccgatgcgccaatcat 367
             |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 48545 acagtgtaccaaacttcattgaagacatccacttgctcatctgatgccccaatcat 48490



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 217   ccagcaagcgccacaagaaaggcgcgccctgtcgtttgctgatttgtttgacgagcagct 276
             ||||||||||||||||||| || || |||| |||||| || ||||||||  |||||| ||
Sbjct: 48729 ccagcaagcgccacaagaagggtgcaccctctcgtttcctaatttgtttctcgagcacct 48670

                       
Query: 277   caattgctgt 286
             ||||||||||
Sbjct: 48669 caattgctgt 48660



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 569   tgcccataatataagtaaatcaaggagccattccgcatgcca 610
             ||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 47765 tgcccataatacaagtagatcaaggagccattccacatgcca 47724



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 462   attgccttgtgcatcacttgctgtcttttcgtgtccat 499
             |||||||| ||||||||||||||| |||| ||||||||
Sbjct: 47961 attgccttttgcatcacttgctgtttttttgtgtccat 47924



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 140   agcagcttgcagagcatttgccttctcggcagccactgaagcgtctgcacctctgcc 196
             |||||| || |||||||||||||| ||||  || |||||||| |||||| |||||||
Sbjct: 49440 agcagcctgtagagcatttgccttttcggatgcgactgaagcatctgcagctctgcc 49384
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                            
Query: 382      catcgaaatctggacccagggtgtcaaacaccgccttgtgctctccttttccatatttat 441
                |||||||||||||||||| | ||||||| ||   ||||||||||||||||||||||| ||
Sbjct: 27256006 catcgaaatctggacccaagatgtcaaagactttcttgtgctctccttttccatattcat 27256065

                                   
Query: 442      aaacagcatctgctagctg 460
                | ||||| |||||||||||
Sbjct: 27256066 acacagcctctgctagctg 27256084



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 312      acagtgtaccaaacttcattgaagacgtccacttgttcatccgatgcgccaatcat 367
                |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 27255850 acagtgtaccaaacttcattgaagacatccacttgctcatctgatgccccaatcat 27255905



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                            
Query: 217      ccagcaagcgccacaagaaaggcgcgccctgtcgtttgctgatttgtttgacgagcagct 276
                ||||||||||||||||||| || || |||| |||||| || ||||||||  |||||| ||
Sbjct: 27255666 ccagcaagcgccacaagaagggtgcaccctctcgtttcctaatttgtttctcgagcacct 27255725

                          
Query: 277      caattgctgt 286
                ||||||||||
Sbjct: 27255726 caattgctgt 27255735



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 569      tgcccataatataagtaaatcaaggagccattccgcatgcca 610
                ||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 27256630 tgcccataatacaagtagatcaaggagccattccacatgcca 27256671



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 462      attgccttgtgcatcacttgctgtcttttcgtgtccat 499
                |||||||| ||||||||||||||| |||| ||||||||
Sbjct: 27256434 attgccttttgcatcacttgctgtttttttgtgtccat 27256471



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 140      agcagcttgcagagcatttgccttctcggcagccactgaagcgtctgcacctctgcc 196
                |||||| || |||||||||||||| ||||  || |||||||| |||||| |||||||
Sbjct: 27254955 agcagcctgtagagcatttgccttttcggatgcgactgaagcatctgcagctctgcc 27255011



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 214      tctccagcaagcgccacaag 233
                ||||||||||||||||||||
Sbjct: 22106483 tctccagcaagcgccacaag 22106464
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                            
Query: 382      catcgaaatctggacccagggtgtcaaacaccgccttgtgctctccttttccatatttat 441
                |||||||||||||||||| | ||||||| ||   ||||||||||||||||||||||| ||
Sbjct: 27347329 catcgaaatctggacccaagatgtcaaagactttcttgtgctctccttttccatattcat 27347388

                                   
Query: 442      aaacagcatctgctagctg 460
                | ||||| |||||||||||
Sbjct: 27347389 acacagcctctgctagctg 27347407



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 312      acagtgtaccaaacttcattgaagacgtccacttgttcatccgatgcgccaatcat 367
                |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 27347173 acagtgtaccaaacttcattgaagacatccacttgctcatctgatgccccaatcat 27347228



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                            
Query: 217      ccagcaagcgccacaagaaaggcgcgccctgtcgtttgctgatttgtttgacgagcagct 276
                ||||||||||||||||||| || || |||| |||||| || ||||||||  |||||| ||
Sbjct: 27346989 ccagcaagcgccacaagaagggtgcaccctctcgtttcctaatttgtttctcgagcacct 27347048

                          
Query: 277      caattgctgt 286
                ||||||||||
Sbjct: 27347049 caattgctgt 27347058



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 569      tgcccataatataagtaaatcaaggagccattccgcatgcca 610
                ||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 27347953 tgcccataatacaagtagatcaaggagccattccacatgcca 27347994



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 462      attgccttgtgcatcacttgctgtcttttcgtgtccat 499
                |||||||| ||||||||||||||| |||| ||||||||
Sbjct: 27347757 attgccttttgcatcacttgctgtttttttgtgtccat 27347794



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 140      agcagcttgcagagcatttgccttctcggcagccactgaagcgtctgcacctctgcc 196
                |||||| || |||||||||||||| ||||  || |||||||| |||||| |||||||
Sbjct: 27346278 agcagcctgtagagcatttgccttttcggatgcgactgaagcatctgcagctctgcc 27346334



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 214      tctccagcaagcgccacaag 233
                ||||||||||||||||||||
Sbjct: 22099512 tctccagcaagcgccacaag 22099493
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>gb|AY109205.1| Zea mays PCO074546 mRNA sequence
          Length = 751

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                       
Query: 562 ttgataatgcccataatataagtaaatcaaggagccattccgcatgccaaatggactcat 621
           |||||| |||||| |||||||| || ||||||||||||||| ||||||| || |||||||
Sbjct: 569 ttgatagtgcccacaatataagcaagtcaaggagccattccacatgccatatagactcat 510

                                      
Query: 622 tcttaagatcatctagcaatgttgtta 648
           |||| ||  ||||||||||||| ||||
Sbjct: 509 tctttagtgcatctagcaatgtcgtta 483
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>emb|CT863711.2| Medicago truncatula chromosome 5 clone mth2-152j13, COMPLETE SEQUENCE
          Length = 108806

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 316   tgtaccaaacttcattgaagacgtccacttgttcatccgatgcgccaat 364
             ||||||||||||||||||| || || ||||||||||| ||||| |||||
Sbjct: 21687 tgtaccaaacttcattgaatacatcaacttgttcatcagatgctccaat 21735
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>gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0065C11, complete sequence
          Length = 141578

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                      
Query: 569  tgcccataatataagtaaatcaaggagccattccgcatgcca 610
            ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 5136 tgcccataatacaagtagatcaatgagccattccacatgcca 5177
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>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12,
             complete sequence
          Length = 102029

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 569   tgcccataatataagtaaatcaaggagccattccgcatgcca 610
             ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 97839 tgcccataatacaagtagatcaatgagccattccacatgcca 97880
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                         
Query: 569     tgcccataatataagtaaatcaaggagccattccgcatgcca 610
               ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 9637793 tgcccataatacaagtagatcaatgagccattccacatgcca 9637752



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                         
Query: 569     tgcccataatataagtaaatcaaggagccattccgcatgcca 610
               ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 3875352 tgcccataatacaagtagatcaatgagccattccacatgcca 3875393
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 569      tgcccataatataagtaaatcaaggagccattccgcatgcca 610
                ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 23735238 tgcccataatacaagtagatcaacgagccattccacatgcca 23735197



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     atgagcagcttgcagagcat 156
               ||||||||||||||||||||
Sbjct: 2426052 atgagcagcttgcagagcat 2426033
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 569      tgcccataatataagtaaatcaaggagccattccgcatgcca 610
                ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 14467131 tgcccataatacaagtagatcaatgagccattccacatgcca 14467172
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 569      tgcccataatataagtaaatcaaggagccattccgcatgcca 610
                ||||||||||| ||||| ||| |||||||||||| |||||||
Sbjct: 14279620 tgcccataatacaagtagatcgaggagccattccacatgcca 14279661
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>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0092C08
          Length = 131049

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 569   tgcccataatataagtaaatcaaggagccattccgcatgcca 610
             ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 24438 tgcccataatacaagtagatcaacgagccattccacatgcca 24397
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>dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1113_A10
          Length = 160089

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                        
Query: 569    tgcccataatataagtaaatcaaggagccattccgcatgcca 610
              ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 142834 tgcccataatacaagtagatcaacgagccattccacatgcca 142793
to top
>dbj|AP003207.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1157F09
          Length = 148802

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 569   tgcccataatataagtaaatcaaggagccattccgcatgcca 610
             ||||||||||| ||||| ||| |||||||||||| |||||||
Sbjct: 30897 tgcccataatacaagtagatcgaggagccattccacatgcca 30938
to top
>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458A05
          Length = 120593

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 569   tgcccataatataagtaaatcaaggagccattccgcatgcca 610
             ||||||||||| ||||| ||| |||||||||||| |||||||
Sbjct: 75310 tgcccataatacaagtagatcgaggagccattccacatgcca 75351
to top
>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1080A02
          Length = 151360

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 569    tgcccataatataagtaaatcaaggagccattccgcatgcca 610
              ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 114868 tgcccataatacaagtagatcaatgagccattccacatgcca 114909
to top
>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0574F11
          Length = 159891

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                      
Query: 569  tgcccataatataagtaaatcaaggagccattccgcatgcca 610
            ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 6864 tgcccataatacaagtagatcaatgagccattccacatgcca 6905
to top
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0706E03
          Length = 188028

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 569   tgcccataatataagtaaatcaaggagccattccgcatgcca 610
             ||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct: 77890 tgcccataatacaagtagatcaatgagccattccacatgcca 77849
to top
>gb|AC097263.6| Homo sapiens X BAC RP11-298C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 159325

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 301    catttaataagacagtgtacca 322
              ||||||||||||||||||||||
Sbjct: 107385 catttaataagacagtgtacca 107364
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>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 431    tccatatttataaacagcatctgct 455
              |||||||||||||| ||||||||||
Sbjct: 734750 tccatatttataaaaagcatctgct 734774
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>gb|DQ483811.1| Gymnogyps californianus clone 234F microsatellite sequence
          Length = 835

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 461 aattgccttgtgcatcacttg 481
           |||||||||||||||||||||
Sbjct: 701 aattgccttgtgcatcacttg 681
to top
>gb|DQ483782.1| Gymnogyps californianus clone 205F microsatellite sequence
          Length = 669

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 461 aattgccttgtgcatcacttg 481
           |||||||||||||||||||||
Sbjct: 139 aattgccttgtgcatcacttg 159
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>gb|AC113598.8| Mus musculus chromosome 14, clone RP23-476N23, complete sequence
          Length = 214461

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 114    ttgcacaaaacaagctaatgaaaat 138
              |||||||| ||||||||||||||||
Sbjct: 128336 ttgcacaacacaagctaatgaaaat 128312
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>emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chromosome 9 Contains a
              ribosomal protein S16 (RPS16) pseudogene, a peptidylprolyl
              isomerase A (cyclophilin A) (PPIA) pseudogene and a CpG
              island, complete sequence
          Length = 199601

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 423    tctccttttccatatttataa 443
              |||||||||||||||||||||
Sbjct: 186086 tctccttttccatatttataa 186106
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>gb|AC114772.5| Homo sapiens BAC clone RP11-427H3 from 2, complete sequence
          Length = 163318

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 93     caaataaatcaccttcagctg 113
              |||||||||||||||||||||
Sbjct: 161195 caaataaatcaccttcagctg 161215
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>ref|NM_184794.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 879

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 tctccagcaagcgccacaag 233
           ||||||||||||||||||||
Sbjct: 839 tctccagcaagcgccacaag 858
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 539     tgctgctttaatttcattca 558
               ||||||||||||||||||||
Sbjct: 1696690 tgctgctttaatttcattca 1696709
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
              sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    ccattgaagagactcttgat 515
              ||||||||||||||||||||
Sbjct: 774893 ccattgaagagactcttgat 774912
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>gb|AC120176.7| Mus musculus chromosome 18, clone RP24-494J20, complete sequence
          Length = 162180

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 364   tcattttatagctaagcccatcga 387
             ||||||||||| ||||||||||||
Sbjct: 70865 tcattttatagataagcccatcga 70842
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>gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome 7, complete sequence
          Length = 175603

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    agttacacccatacatacat 83
             ||||||||||||||||||||
Sbjct: 52329 agttacacccatacatacat 52310
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>gb|DQ158856.1| Bigelowiella natans nucleomorph chromosome 1, partial sequence
          Length = 140590

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttcttattattagacaattt 37
             ||||||||||||||||||||
Sbjct: 64950 ttcttattattagacaattt 64931
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>ref|XM_572328.1| Cryptococcus neoformans var. neoformans JEC21 hexokinase (CNH01400)
           partial mRNA
          Length = 1866

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 496 ccattgaagagactcttgat 515
           ||||||||||||||||||||
Sbjct: 442 ccattgaagagactcttgat 461
to top
>ref|XM_572329.1| Cryptococcus neoformans var. neoformans JEC21 hexokinase (CNH01400)
           partial mRNA
          Length = 1953

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 496 ccattgaagagactcttgat 515
           ||||||||||||||||||||
Sbjct: 529 ccattgaagagactcttgat 548
to top
>gb|AC121595.3| Mus musculus BAC clone RP23-299A12 from chromosome X, complete sequence
          Length = 214297

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    ccagcatttaataagacagt 316
              ||||||||||||||||||||
Sbjct: 196686 ccagcatttaataagacagt 196705
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>gb|AC121781.3| Mus musculus BAC clone RP23-363D24 from chromosome X, complete
            sequence
          Length = 174187

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ccagcatttaataagacagt 316
            ||||||||||||||||||||
Sbjct: 4494 ccagcatttaataagacagt 4513
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>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 471    tgcatcacttgctgtctttt 490
              ||||||||||||||||||||
Sbjct: 173822 tgcatcacttgctgtctttt 173803
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>gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, complete sequence
          Length = 168415

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    agttacacccatacatacat 83
             ||||||||||||||||||||
Sbjct: 65704 agttacacccatacatacat 65685
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>ref|XM_718699.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03611)
            partial mRNA
          Length = 2544

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   caacaagtacaaataaatca 103
            ||||||||||||||||||||
Sbjct: 1240 caacaagtacaaataaatca 1259
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>gb|AC091783.9| Genomic sequence for Mus musculus, clone RP23-16G10, complete
           sequence
          Length = 228160

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 gccttgtgctctccttttcc 433
           ||||||||||||||||||||
Sbjct: 593 gccttgtgctctccttttcc 612
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>emb|AL139009.14| Human DNA sequence from clone RP5-976H8 on chromosome 10p14-15.3,
              complete sequence
          Length = 172657

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    tctccttttccatatttata 442
              ||||||||||||||||||||
Sbjct: 156984 tctccttttccatatttata 156965
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>ref|XM_778912.1| PREDICTED: Strongylocentrotus purpuratus similar to SAC1 (supressor
           of actin mutations 1, homolog)-like (LOC578760), mRNA
          Length = 1878

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 gtttgataatgcccataata 579
           ||||||||||||||||||||
Sbjct: 292 gtttgataatgcccataata 273
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>emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on chromosome 11 Contains
            three novel genes, the 5' end of the Galnt9 gene for
            UDP-N-acetyl-alpha-D-galactosamine: polypeptide
            N-acetylgalactosaminyltransferase 9 and a CpG island,
            complete sequence
          Length = 198647

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   agttacacccatacatacat 83
            ||||||||||||||||||||
Sbjct: 5737 agttacacccatacatacat 5756
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>emb|BX005124.7| Zebrafish DNA sequence from clone CH211-284A16 in linkage group 20
            Contains the 5' end of the xrn2 gene for 5'-3'
            exoribonuclease 2, a novel gene and a CpG island,
            complete sequence
          Length = 148325

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 120  aaaacaagctaatgaaaatgagca 143
            ||||||||||||| ||||||||||
Sbjct: 9914 aaaacaagctaataaaaatgagca 9937
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>gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome 7, complete sequence
          Length = 222398

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     tacatacatcaacaagtacaaata 98
              |||||||||||||||| |||||||
Sbjct: 145169 tacatacatcaacaaggacaaata 145146
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>gb|AF511037.1| Enterococcus faecium plasmid pEFR, complete sequence
          Length = 3176

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 546  ttaatttcattcatgtttgataat 569
            ||||||| ||||||||||||||||
Sbjct: 1060 ttaatttgattcatgtttgataat 1037
to top
>gb|AC115837.1| Homo sapiens chromosome 8, clone RP11-730G20, complete sequence
          Length = 160709

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   ttgtgctctccttttccata 436
             ||||||||||||||||||||
Sbjct: 70004 ttgtgctctccttttccata 70023
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>gb|AC022905.7| Homo sapiens chromosome 8, clone RP11-656G20, complete sequence
          Length = 184311

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    ttgtgctctccttttccata 436
              ||||||||||||||||||||
Sbjct: 167844 ttgtgctctccttttccata 167863
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>gb|AC163646.2| Mus musculus BAC clone RP23-207D1 from chromosome 14, complete
            sequence
          Length = 185289

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gccttgtgctctccttttcc 433
            ||||||||||||||||||||
Sbjct: 3463 gccttgtgctctccttttcc 3444
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>gb|AF380336.1|AF380336 Lactococcus lactis plasmid pCRL291.1, complete sequence
          Length = 4640

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 546  ttaatttcattcatgtttgataat 569
            ||||||| ||||||||||||||||
Sbjct: 3017 ttaatttgattcatgtttgataat 3040
to top
>gb|AC093865.2| Homo sapiens BAC clone RP11-560C24 from 2, complete sequence
          Length = 186218

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 416    cttgtgctctccttttccatattt 439
              ||||| ||||||||||||||||||
Sbjct: 161347 cttgttctctccttttccatattt 161324
to top
>gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O15, complete sequence
          Length = 189042

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   ttgtgctctccttttccata 436
             ||||||||||||||||||||
Sbjct: 63635 ttgtgctctccttttccata 63654
to top
>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
             sequence
          Length = 167397

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   tctccagcaagcgccacaag 233
             ||||||||||||||||||||
Sbjct: 41799 tctccagcaagcgccacaag 41818
to top
>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete
              sequence
          Length = 132987

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    tctccagcaagcgccacaag 233
              ||||||||||||||||||||
Sbjct: 118379 tctccagcaagcgccacaag 118398
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>gb|AF177168.1|AF177168 Streptococcus thermophilus plasmid pER36, complete plasmid sequence
          Length = 3498

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 546  ttaatttcattcatgtttgataat 569
            ||||||| ||||||||||||||||
Sbjct: 1281 ttaatttgattcatgtttgataat 1304
to top
>gb|AF177167.1|AF177167 Streptococcus thermophilus plasmid pER35, complete plasmid sequence
          Length = 9531

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 546  ttaatttcattcatgtttgataat 569
            ||||||| ||||||||||||||||
Sbjct: 2558 ttaatttgattcatgtttgataat 2581
to top
>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0025F03
          Length = 138042

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    atgagcagcttgcagagcat 156
              ||||||||||||||||||||
Sbjct: 102022 atgagcagcttgcagagcat 102003
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>gb|AC155922.1| Mus musculus BAC clone RP24-501E5 from 12, complete sequence
          Length = 169610

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 131   atgaaaatgagcagcttgcagagc 154
             ||||||||||||| ||||||||||
Sbjct: 31241 atgaaaatgagcatcttgcagagc 31218
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>emb|BX640591.4| Zebrafish DNA sequence from clone DKEY-39A18 in linkage group 4,
             complete sequence
          Length = 68080

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   aatttcattcatgtttgata 567
             ||||||||||||||||||||
Sbjct: 10958 aatttcattcatgtttgata 10977
to top
>gb|AC171177.2| Gallus gallus BAC clone CH261-178G24 from chromosome ul, complete
             sequence
          Length = 203278

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    acaagtacaaataaatcacc 105
             ||||||||||||||||||||
Sbjct: 35088 acaagtacaaataaatcacc 35069
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>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome
          Length = 1830138

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 539     tgctgctttaatttcattca 558
               ||||||||||||||||||||
Sbjct: 1362789 tgctgctttaatttcattca 1362770
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>emb|CT030739.10| Mouse DNA sequence from clone RP24-496K8 on chromosome 13, complete
             sequence
          Length = 192075

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    agttacacccatacatacat 83
             ||||||||||||||||||||
Sbjct: 82849 agttacacccatacatacat 82830
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>emb|BX005240.7| Mouse DNA sequence from clone RP23-185M16 on chromosome X, complete
              sequence
          Length = 197310

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    ccagcatttaataagacagt 316
              ||||||||||||||||||||
Sbjct: 131929 ccagcatttaataagacagt 131910
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>gb|M55616.1|MUSPROTA Mus musculus mouse mast cell protease-4 gene, complete cds
          Length = 4644

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gccttgtgctctccttttcc 433
            ||||||||||||||||||||
Sbjct: 2703 gccttgtgctctccttttcc 2684


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,860,531
Number of Sequences: 3902068
Number of extensions: 6860531
Number of successful extensions: 138750
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138210
Number of HSP's gapped (non-prelim): 540
length of query: 652
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 629
effective length of database: 17,143,297,704
effective search space: 10783134255816
effective search space used: 10783134255816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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