>YDVG_SCHPO (O14232) Putative helicase C6F12.16c (EC 3.6.1.-)|
          Length = 1117

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
 Frame = +3

Query: 60  KHTLLLLQTRPCIHMIILCTTTTLPMQFAAWNTYIH--------TTDKPQPLQPSSMPT 212
           + T++LL  +   H + L  T    MQFA W T IH        T  +P PLQ    P+
Sbjct: 326 EETIILLPDKS--HFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLFPS 382

>APX1_CAEEL (P41990) Anterior pharynx in excess protein 1 precursor|
          Length = 515

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 158 CIPGCKLHWQCSSSAQDNHMDAWSG 84
           CI   KLHW+CS+         WSG
Sbjct: 145 CIANAKLHWECSTHGVRRCSAGWSG 169

>HEPA_VZVD (P09300) DNA helicase/primase complex-associated protein|
          Length = 771

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
 Frame = +1

Query: 109 SCALL--LHCQCNLQPGIHTYI-----LLTSHNRYSHPA 204
           SCA +  + C  +L+P IHT++     LL +HN +S P+
Sbjct: 717 SCACIPPIDCAAHLKPLIHTFVTIINHLLDAHNDFSSPS 755

>GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)|
          Length = 1258

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 258  LPIVLAPRRPVLLVPTQDPRDLQTTAEGLVEEHPSLE 368
            +P +L  R+P  + P   P  + T   GLV+  P LE
Sbjct: 1012 VPSLLPARQPGFMEPQTGPMGVATAGFGLVQPRPPLE 1048

>MAA_BACSU (P37515) Probable maltose O-acetyltransferase (EC 2.3.1.79)|
           (Maltose transacetylase)
          Length = 184

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
 Frame = +1

Query: 70  YYYYKPDHASI*LSCALL------LHCQCNLQPGIHTY 165
           Y+ +  DH  +   C +L      + C C + PG+H Y
Sbjct: 73  YHIHIGDHTFVNFDCVILDVCEVRIGCHCLIAPGVHIY 110

>MISS_MOUSE (Q9D7G9) MAPK-interacting and spindle-stabilizing protein|
           (Mitogen-activated protein kinase 1-interacting protein
           1)
          Length = 263

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 248 IYPSTYRPCSAPPGPSCAHPG 310
           + PS   P   PPGPS A PG
Sbjct: 141 LQPSPNNPYPLPPGPSAASPG 161

>GRSB_BREBE (P0C064) Gramicidin S synthetase 2 (Gramicidin S synthetase II)|
            [Includes: ATP-dependent proline adenylase (ProA)
            (Proline activase); ATP-dependent valine adenylase (ValA)
            (Valine activase); ATP-dependent ornithine adenylase
            (OrnA) (Ornithine
          Length = 4449

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 240  RRQSIHLPIVLAPRRPVLLVPTQDPRDLQTTAEG 341
            ++Q  +   V A  RP+L +PT  PR +Q + +G
Sbjct: 3314 KKQEEYWVNVFADERPILDIPTDYPRPMQQSFDG 3347

>ATP9B_MOUSE (P98195) Probable phospholipid-transporting ATPase IIB (EC 3.6.3.1)|
          Length = 1095

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 52  DKLSIHYYYYKPDHASI*LSCALLLHCQCNLQPGIHTYILLTSHNR 189
           D L +   YY+ +   +   C  ++ C+C+     H   LL  H R
Sbjct: 769 DSLEVCLRYYEHELVELACQCPAVVCCRCSPTQKAHIVTLLRQHTR 814

>GRSB_ANEMI (P0C063) Gramicidin S synthetase 2 (Gramicidin S synthetase II)|
            [Includes: ATP-dependent proline adenylase (ProA)
            (Proline activase); ATP-dependent valine adenylase (ValA)
            (Valine activase); ATP-dependent ornithine adenylase
            (OrnA) (Ornithine
          Length = 4450

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 240  RRQSIHLPIVLAPRRPVLLVPTQDPRDLQTTAEG 341
            ++Q  +   V A  RP+L +PT  PR +Q + +G
Sbjct: 3315 KKQEEYWVNVFADERPILDIPTDYPRPMQQSFDG 3348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,493,131
Number of Sequences: 219361
Number of extensions: 1005297
Number of successful extensions: 2972
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2969
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)