ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41i02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY838897.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 1 (NCED1) mRNA, complete cds Length = 2119 Score = 293 bits (148), Expect = 2e-76 Identities = 229/256 (89%) Strand = Plus / Minus Query: 114 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 173 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 2018 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1959 Query: 174 ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 233 ||||||| || ||||||||||| |||||||| |||||||| |||||| | ||||||| Sbjct: 1958 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1899 Query: 234 tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 293 |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||| Sbjct: 1898 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1839 Query: 294 cgtcctcgtcgccgttcccctcgacgtcgtcggagacgaagaatggctccccggcgaagc 353 | ||||||| |||||| |||||||||||||||| |||||||| || || |||||||||| Sbjct: 1838 catcctcgttgccgttgccctcgacgtcgtcggccacgaagaacggttcgccggcgaagc 1779 Query: 354 accccggcccgaagtc 369 |||| ||||||||||| Sbjct: 1778 acccgggcccgaagtc 1763
>ref|XM_506928.1| PREDICTED Oryza sativa (japonica cultivar-group), P0724B10.24 mRNA Length = 2079 Score = 293 bits (148), Expect = 2e-76 Identities = 229/256 (89%) Strand = Plus / Minus Query: 114 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 173 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877 Query: 174 ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 233 ||||||| || ||||||||||| |||||||| |||||||| |||||| | ||||||| Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1817 Query: 234 tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 293 |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||| Sbjct: 1816 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1757 Query: 294 cgtcctcgtcgccgttcccctcgacgtcgtcggagacgaagaatggctccccggcgaagc 353 | ||||||| |||||| |||||||||||||||| |||||||| || || |||||||||| Sbjct: 1756 catcctcgttgccgttgccctcgacgtcgtcggccacgaagaacggttcgccggcgaagc 1697 Query: 354 accccggcccgaagtc 369 |||| ||||||||||| Sbjct: 1696 acccgggcccgaagtc 1681
>ref|XM_467354.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2079 Score = 293 bits (148), Expect = 2e-76 Identities = 229/256 (89%) Strand = Plus / Minus Query: 114 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 173 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877 Query: 174 ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 233 ||||||| || ||||||||||| |||||||| |||||||| |||||| | ||||||| Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1817 Query: 234 tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 293 |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||| Sbjct: 1816 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1757 Query: 294 cgtcctcgtcgccgttcccctcgacgtcgtcggagacgaagaatggctccccggcgaagc 353 | ||||||| |||||| |||||||||||||||| |||||||| || || |||||||||| Sbjct: 1756 catcctcgttgccgttgccctcgacgtcgtcggccacgaagaacggttcgccggcgaagc 1697 Query: 354 accccggcccgaagtc 369 |||| ||||||||||| Sbjct: 1696 acccgggcccgaagtc 1681
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 293 bits (148), Expect = 2e-76 Identities = 229/256 (89%) Strand = Plus / Plus Query: 114 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 173 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 29044735 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 29044794 Query: 174 ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 233 ||||||| || ||||||||||| |||||||| |||||||| |||||| | ||||||| Sbjct: 29044795 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 29044854 Query: 234 tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 293 |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||| Sbjct: 29044855 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 29044914 Query: 294 cgtcctcgtcgccgttcccctcgacgtcgtcggagacgaagaatggctccccggcgaagc 353 | ||||||| |||||| |||||||||||||||| |||||||| || || |||||||||| Sbjct: 29044915 catcctcgttgccgttgccctcgacgtcgtcggccacgaagaacggttcgccggcgaagc 29044974 Query: 354 accccggcccgaagtc 369 |||| ||||||||||| Sbjct: 29044975 acccgggcccgaagtc 29044990 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 cgtagccgtcgtcctcgtcg 304 |||||||||||||||||||| Sbjct: 32012087 cgtagccgtcgtcctcgtcg 32012068
>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0724B10 Length = 169143 Score = 293 bits (148), Expect = 2e-76 Identities = 229/256 (89%) Strand = Plus / Plus Query: 114 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 173 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 90900 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 90959 Query: 174 ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 233 ||||||| || ||||||||||| |||||||| |||||||| |||||| | ||||||| Sbjct: 90960 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 91019 Query: 234 tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 293 |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||| Sbjct: 91020 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 91079 Query: 294 cgtcctcgtcgccgttcccctcgacgtcgtcggagacgaagaatggctccccggcgaagc 353 | ||||||| |||||| |||||||||||||||| |||||||| || || |||||||||| Sbjct: 91080 catcctcgttgccgttgccctcgacgtcgtcggccacgaagaacggttcgccggcgaagc 91139 Query: 354 accccggcccgaagtc 369 |||| ||||||||||| Sbjct: 91140 acccgggcccgaagtc 91155
>dbj|AK099580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040C20, full insert sequence Length = 2080 Score = 293 bits (148), Expect = 2e-76 Identities = 229/256 (89%) Strand = Plus / Minus Query: 114 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 173 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877 Query: 174 ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 233 ||||||| || ||||||||||| |||||||| |||||||| |||||| | ||||||| Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1817 Query: 234 tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 293 |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||| Sbjct: 1816 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1757 Query: 294 cgtcctcgtcgccgttcccctcgacgtcgtcggagacgaagaatggctccccggcgaagc 353 | ||||||| |||||| |||||||||||||||| |||||||| || || |||||||||| Sbjct: 1756 catcctcgttgccgttgccctcgacgtcgtcggccacgaagaacggttcgccggcgaagc 1697 Query: 354 accccggcccgaagtc 369 |||| ||||||||||| Sbjct: 1696 acccgggcccgaagtc 1681
>dbj|AK064824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F03, full insert sequence Length = 2080 Score = 293 bits (148), Expect = 2e-76 Identities = 229/256 (89%) Strand = Plus / Minus Query: 114 atcattggtgctgtgaccggagctcggcctgcctgacgaacaggccgtggaagccgtagg 173 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1936 atcattggtgctgtgactggagctcggcctgcgtgacgaacaggccatggaagccgtagg 1877 Query: 174 ggacgcgggatggaagctgcacctcggcgacgatgtccaggtcgggcgactgtgcgtcca 233 ||||||| || ||||||||||| |||||||| |||||||| |||||| | ||||||| Sbjct: 1876 ggacgcgtccgggcagctgcacctccgcgacgatctccaggtccggcgaccgcgcgtcca 1817 Query: 234 tcaccacgaaccggttgtcgccggtgccctcgtcgtgcacgtagcacaccacgtagccgt 293 |||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| |||| Sbjct: 1816 tcaccacgaaccggttctcgccggtggcctcgtcgtggacgtagcacaccaagtacccgt 1757 Query: 294 cgtcctcgtcgccgttcccctcgacgtcgtcggagacgaagaatggctccccggcgaagc 353 | ||||||| |||||| |||||||||||||||| |||||||| || || |||||||||| Sbjct: 1756 catcctcgttgccgttgccctcgacgtcgtcggccacgaagaacggttcgccggcgaagc 1697 Query: 354 accccggcccgaagtc 369 |||| ||||||||||| Sbjct: 1696 acccgggcccgaagtc 1681
>gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 5 (NCED5) mRNA, complete cds Length = 2041 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcg 180 |||||||||||||||||||||||| Sbjct: 1901 gccgtggaagccgtaggggacgcg 1878
>gb|AY838900.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 4 (NCED4) mRNA, complete cds Length = 1949 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 261 cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctc 300 |||||||||| ||| |||||| ||||| |||||||||||| Sbjct: 1706 cctcgtcgtggacgaagcacagcacgtggccgtcgtcctc 1667
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcg 180 |||||||||||||||||||||||| Sbjct: 26303686 gccgtggaagccgtaggggacgcg 26303663
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 261 cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctc 300 |||||||||| ||| |||||| ||||| |||||||||||| Sbjct: 2904562 cctcgtcgtggacgaagcacagcacgtggccgtcgtcctc 2904523
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 261 cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctc 300 |||||||||| ||| |||||| ||||| |||||||||||| Sbjct: 74849 cctcgtcgtggacgaagcacagcacgtggccgtcgtcctc 74810
>dbj|AK119780.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D12, full insert sequence Length = 2144 Score = 48.1 bits (24), Expect = 0.022 Identities = 36/40 (90%) Strand = Plus / Minus Query: 261 cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctc 300 |||||||||| ||| |||||| ||||| |||||||||||| Sbjct: 1725 cctcgtcgtggacgaagcacagcacgtggccgtcgtcctc 1686
>dbj|AK107649.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F10, full insert sequence Length = 1475 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcg 180 |||||||||||||||||||||||| Sbjct: 813 gccgtggaagccgtaggggacgcg 790
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcg 180 |||||||||||||||||||||||| Sbjct: 26231862 gccgtggaagccgtaggggacgcg 26231839
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcg 180 |||||||||||||||||||||||| Sbjct: 67670 gccgtggaagccgtaggggacgcg 67647
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcg 180 |||||||||||||||||||||||| Sbjct: 17965 gccgtggaagccgtaggggacgcg 17942
>gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 3 (NCED3) mRNA, complete cds Length = 2060 Score = 46.1 bits (23), Expect = 0.087 Identities = 35/39 (89%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcgggatggaagctgcac 195 ||||||||||||||| || |||||||| || |||||||| Sbjct: 1958 gccgtggaagccgtacggcacgcgggacggcagctgcac 1920
>ref|NM_102219.2| Arabidopsis thaliana unknown protein AT1G23710 mRNA, complete cds Length = 1176 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 tcgacgtcgtcggagacgaagaa 336 ||||||||||||||||||||||| Sbjct: 824 tcgacgtcgtcggagacgaagaa 846
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 46.1 bits (23), Expect = 0.087 Identities = 35/39 (89%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcgggatggaagctgcac 195 ||||||||||||||| || |||||||| || |||||||| Sbjct: 144759 gccgtggaagccgtacggcacgcgggacggcagctgcac 144721
>gb|DQ145930.1| Hordeum vulgare subsp. vulgare 9-cis-epoxycarotenoid dioxygenase 1 mRNA, complete cds Length = 2376 Score = 46.1 bits (23), Expect = 0.087 Identities = 35/39 (89%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcgggatggaagctgcac 195 |||||||||||| |||||||| ||||| || |||||||| Sbjct: 1773 gccgtggaagccataggggacccgggacggcagctgcac 1735 Score = 46.1 bits (23), Expect = 0.087 Identities = 41/47 (87%) Strand = Plus / Minus Query: 261 cctcgtcgtgcacgtagcacaccacgtagccgtcgtcctcgtcgccg 307 |||||||| ||||| || | | ||||||||||||||||||| ||||| Sbjct: 1675 cctcgtcgcgcacgaaggagagcacgtagccgtcgtcctcggcgccg 1629
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.087 Identities = 35/39 (89%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcgggatggaagctgcac 195 ||||||||||||||| || |||||||| || |||||||| Sbjct: 24766070 gccgtggaagccgtacggcacgcgggacggcagctgcac 24766032
>gb|AF325099.1|AF325099 Arabidopsis thaliana unknown protein (F5O8.26) mRNA, complete cds Length = 888 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 tcgacgtcgtcggagacgaagaa 336 ||||||||||||||||||||||| Sbjct: 712 tcgacgtcgtcggagacgaagaa 734
>emb|BX814948.1|CNS0ABE7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZH08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1138 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 tcgacgtcgtcggagacgaagaa 336 ||||||||||||||||||||||| Sbjct: 786 tcgacgtcgtcggagacgaagaa 808
>gb|BT005865.1| Arabidopsis thaliana At1g23710 gene, complete cds Length = 888 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 tcgacgtcgtcggagacgaagaa 336 ||||||||||||||||||||||| Sbjct: 712 tcgacgtcgtcggagacgaagaa 734
>gb|AY087535.1| Arabidopsis thaliana clone 36437 mRNA, complete sequence Length = 1100 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 tcgacgtcgtcggagacgaagaa 336 ||||||||||||||||||||||| Sbjct: 830 tcgacgtcgtcggagacgaagaa 852
>gb|AC005990.1|F5O8 Arabidopsis thaliana chromosome 1 BAC F5O8 sequence, complete sequence Length = 99923 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 314 tcgacgtcgtcggagacgaagaa 336 ||||||||||||||||||||||| Sbjct: 60275 tcgacgtcgtcggagacgaagaa 60297
>emb|X77865.1|SGKSACPG S.griseus genes for ketosynthase, acyl carrier protein, ketoreductase, cyclase and dehydrase Length = 5364 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 296 tcctcgtcgccgttcccctcgacgtcgtcg 325 ||||||||||||||| ||||||||| |||| Sbjct: 4205 tcctcgtcgccgttctcctcgacgtggtcg 4176
>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11 Length = 349697 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 85 agaacgtgctggtgtatctgaatctg 110 |||||||||||||||||||| ||||| Sbjct: 280488 agaacgtgctggtgtatctgtatctg 280513
>ref|NM_111838.2| Arabidopsis thaliana unknown protein AT3G10030 mRNA, complete cds Length = 1990 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgtcgtcctcgtcgccgttcc 311 ||||||||||||||||||||| Sbjct: 292 cgtcgtcctcgtcgccgttcc 272
>gb|AY742216.1| Rattus norvegicus sulfatase FP2 mRNA, complete cds Length = 4172 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 ccccggcccgaagtcccggcg 375 ||||||||||||||||||||| Sbjct: 534 ccccggcccgaagtcccggcg 514
>gb|AC010927.5|ATAC010927 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence Length = 96232 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgtcgtcctcgtcgccgttcc 311 ||||||||||||||||||||| Sbjct: 48883 cgtcgtcctcgtcgccgttcc 48863
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 197 tcggcgacgatgtccaggtcgggcg 221 |||||| |||||||||||||||||| Sbjct: 48162 tcggcgtcgatgtccaggtcgggcg 48138
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 197 tcggcgacgatgtccaggtcgggcg 221 |||||| |||||||||||||||||| Sbjct: 312040 tcggcgtcgatgtccaggtcgggcg 312016
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 197 tcggcgacgatgtccaggtcgggcg 221 |||||| |||||||||||||||||| Sbjct: 172205 tcggcgtcgatgtccaggtcgggcg 172229
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 cgtcgtcctcgtcgccgttcc 311 ||||||||||||||||||||| Sbjct: 32504 cgtcgtcctcgtcgccgttcc 32524
>gb|AY120687.1| Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds Length = 1629 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgtcgtcctcgtcgccgttcc 311 ||||||||||||||||||||| Sbjct: 178 cgtcgtcctcgtcgccgttcc 158
>gb|AF375431.1| Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds Length = 1983 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 cgtcgtcctcgtcgccgttcc 311 ||||||||||||||||||||| Sbjct: 292 cgtcgtcctcgtcgccgttcc 272
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 cacgaaccggttgtcgccggt 258 ||||||||||||||||||||| Sbjct: 1468903 cacgaaccggttgtcgccggt 1468883
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 gctgcacctcggcgacgatgtccag 213 |||||||||||||||| |||||||| Sbjct: 3236706 gctgcacctcggcgaccatgtccag 3236682
>dbj|AK129316.1| Mus musculus mRNA for mKIAA1247 protein Length = 3925 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 ccccggcccgaagtcccggcg 375 ||||||||||||||||||||| Sbjct: 315 ccccggcccgaagtcccggcg 295
>emb|AL589873.11| Mouse DNA sequence from clone RP23-120P1 on chromosome 2, complete sequence Length = 170936 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 ccccggcccgaagtcccggcg 375 ||||||||||||||||||||| Sbjct: 114740 ccccggcccgaagtcccggcg 114760
>dbj|D78198.1| Pimelobacter sp. DNA for trehalose synthase, complete cds Length = 2304 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 250 gtcgccggtgccctcgtcgtgcacg 274 |||||||||| |||||||||||||| Sbjct: 252 gtcgccggtgacctcgtcgtgcacg 228
>ref|XM_550600.1| Oryza sativa (japonica cultivar-group), mRNA Length = 276 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gccgtcgtcctcgtcgccgt 308 |||||||||||||||||||| Sbjct: 210 gccgtcgtcctcgtcgccgt 191
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gccgtcgtcctcgtcgccgt 308 |||||||||||||||||||| Sbjct: 39687 gccgtcgtcctcgtcgccgt 39706
>ref|NM_001032745.1| Takifugu rubripes BAW protein (BAW), mRNA Length = 1786 Score = 40.1 bits (20), Expect = 5.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 289 gccgtcgtcctcgtcgccgttcccctcgacgtcgtc 324 |||||| || ||| || ||||||||||||||||||| Sbjct: 1149 gccgtcttcttcgccggcgttcccctcgacgtcgtc 1114
>ref|XM_504976.1| Yarrowia lipolytica CLIB122, YALI0F04059g predicted mRNA Length = 1386 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 cgtagccgtcgtcctcgtcgccgt 308 ||||||| |||||||||||||||| Sbjct: 802 cgtagccatcgtcctcgtcgccgt 779
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gcctgacgaacaggccgtgg 163 |||||||||||||||||||| Sbjct: 2409487 gcctgacgaacaggccgtgg 2409468 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 acaggccgtggaagccgtag 172 |||||||||||||||||||| Sbjct: 1066435 acaggccgtggaagccgtag 1066454
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 280 caccacgtagccgtcgtcctcgtcgccg 307 |||| |||||||||| |||||||||||| Sbjct: 4078519 cacctcgtagccgtcctcctcgtcgccg 4078546
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 acaggccgtggaagccgtag 172 |||||||||||||||||||| Sbjct: 2736990 acaggccgtggaagccgtag 2737009
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ccgtcgtcctcgtcgccgtt 309 |||||||||||||||||||| Sbjct: 70859 ccgtcgtcctcgtcgccgtt 70878
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gccgtcgtcctcgtcgccgt 308 |||||||||||||||||||| Sbjct: 1719472 gccgtcgtcctcgtcgccgt 1719491
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 ccgaagtcccggcgcgccaccggt 385 |||||||||| ||||||||||||| Sbjct: 27143453 ccgaagtccccgcgcgccaccggt 27143476
>gb|AC009111.8| Homo sapiens chromosome 16 clone RP11-468D1, complete sequence Length = 153456 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ctatttctcctatgtgtatg 22 |||||||||||||||||||| Sbjct: 55812 ctatttctcctatgtgtatg 55831
>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence Length = 181955 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ctatttctcctatgtgtatg 22 |||||||||||||||||||| Sbjct: 26147 ctatttctcctatgtgtatg 26128
>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0493C11 Length = 143113 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gccgtcgtcctcgtcgccgt 308 |||||||||||||||||||| Sbjct: 122643 gccgtcgtcctcgtcgccgt 122662
>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003E08 Length = 135014 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 ccgaagtcccggcgcgccaccggt 385 |||||||||| ||||||||||||| Sbjct: 51131 ccgaagtccccgcgcgccaccggt 51154
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cggcgacgatgtccaggtcg 217 |||||||||||||||||||| Sbjct: 4418128 cggcgacgatgtccaggtcg 4418147
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cggcgacgatgtccaggtcg 217 |||||||||||||||||||| Sbjct: 576629 cggcgacgatgtccaggtcg 576648
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gccgtcgtcctcgtcgccgt 308 |||||||||||||||||||| Sbjct: 44621 gccgtcgtcctcgtcgccgt 44640
>gb|AE005000.1| Halobacterium sp. NRC-1 section 31 of 170 of the complete genome Length = 11487 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gccgtcgtcctcgtcgccgt 308 |||||||||||||||||||| Sbjct: 5990 gccgtcgtcctcgtcgccgt 5971
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 cgtagccgtcgtcctcgtcg 304 |||||||||||||||||||| Sbjct: 32462 cgtagccgtcgtcctcgtcg 32443
>gb|AC152831.2| Ornithorhynchus anatinus chromosome UNK clone OABb-168A1, complete sequence Length = 139370 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 accccggcccgaagtcccgg 373 |||||||||||||||||||| Sbjct: 61650 accccggcccgaagtcccgg 61631
>gb|U95953.1|ZMU95953 Zea mays viviparous-14 (vp14) mRNA, complete cds Length = 2498 Score = 40.1 bits (20), Expect = 5.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 157 gccgtggaagccgtaggggacgcgggatggaagctg 192 ||||||||||||| |||| |||||||| || ||||| Sbjct: 1872 gccgtggaagccgaagggcacgcgggacggcagctg 1837
>gb|AF153879.1|AF153879 Fugu rubripes BAW (BAW) mRNA, complete cds Length = 1786 Score = 40.1 bits (20), Expect = 5.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 289 gccgtcgtcctcgtcgccgttcccctcgacgtcgtc 324 |||||| || ||| || ||||||||||||||||||| Sbjct: 1149 gccgtcttcttcgccggcgttcccctcgacgtcgtc 1114
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 cgtagccgtcgtcctcgtcgccgt 308 ||||||| |||||||||||||||| Sbjct: 606800 cgtagccatcgtcctcgtcgccgt 606823 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,184,180 Number of Sequences: 3902068 Number of extensions: 2184180 Number of successful extensions: 47179 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46277 Number of HSP's gapped (non-prelim): 895 length of query: 400 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 378 effective length of database: 17,147,199,772 effective search space: 6481641513816 effective search space used: 6481641513816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
