ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41h21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL358372.11| Human DNA sequence from clone RP11-350E19 on ch... 40 2.9
2emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in ... 40 2.9
3gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, co... 40 2.9
4gb|AC022121.6| Homo sapiens chromosome 5 clone CTD-2007H13, comp... 40 2.9
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
6gb|AC106741.3| Homo sapiens chromosome 16 clone RP11-105F24, com... 40 2.9
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.9
8emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.9
9emb|AL138783.6| Human DNA sequence from clone RP5-1165D20 on chr... 40 2.9

>emb|AL358372.11| Human DNA sequence from clone RP11-350E19 on chromosome 1 Contains a
             rodent farnesoid X receptor beta (Fxrb) pseudogene and the
             5' end of the SYCP1 gene for synaptonemal complex protein
             1, complete sequence
          Length = 155819

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    atgacaaatgtatgataaat 30
             ||||||||||||||||||||
Sbjct: 74398 atgacaaatgtatgataaat 74417



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>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete
              sequence
          Length = 186135

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     acatggaaatacaatatggt 87
              ||||||||||||||||||||
Sbjct: 166707 acatggaaatacaatatggt 166688



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>gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, complete sequence
          Length = 166236

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    atgacaaatgtatgataaat 30
             ||||||||||||||||||||
Sbjct: 80068 atgacaaatgtatgataaat 80049



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>gb|AC022121.6| Homo sapiens chromosome 5 clone CTD-2007H13, complete sequence
          Length = 219258

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    atgacaaatgtatgataaat 30
             ||||||||||||||||||||
Sbjct: 59144 atgacaaatgtatgataaat 59163



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 18       atgtatgataaatacagaat 37
                ||||||||||||||||||||
Sbjct: 22849581 atgtatgataaatacagaat 22849562



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>gb|AC106741.3| Homo sapiens chromosome 16 clone RP11-105F24, complete sequence
          Length = 176424

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    atgacaaatgtatgataaat 30
             ||||||||||||||||||||
Sbjct: 21340 atgacaaatgtatgataaat 21359



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 18       atgtatgataaatacagaat 37
                ||||||||||||||||||||
Sbjct: 22777772 atgtatgataaatacagaat 22777753



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>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     atgtatgataaatacagaat 37
              ||||||||||||||||||||
Sbjct: 107263 atgtatgataaatacagaat 107282



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>emb|AL138783.6| Human DNA sequence from clone RP5-1165D20 on chromosome 1p13.1-13.3,
             complete sequence
          Length = 118065

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    atgacaaatgtatgataaat 30
             ||||||||||||||||||||
Sbjct: 56762 atgacaaatgtatgataaat 56781


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,187,605
Number of Sequences: 3902068
Number of extensions: 1187605
Number of successful extensions: 75862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75801
Number of HSP's gapped (non-prelim): 61
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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