| Clone Name | rbaal41h14 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chl... | 64 | 1e-10 | 2 | PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chl... | 62 | 3e-10 | 3 | PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chl... | 56 | 3e-08 | 4 | PSAN_VOLCA (Q9SBN5) Photosystem I reaction center subunit N, chl... | 31 | 1.1 | 5 | LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor ... | 28 | 9.0 |
|---|
>PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 145 Score = 63.9 bits (154), Expect = 1e-10 Identities = 26/27 (96%), Positives = 26/27 (96%) Frame = -2 Query: 159 PFITDDLEIECEGKXKFKCGSNVFWKW 79 PFITDDLEIECEGK KFKCGSNVFWKW Sbjct: 119 PFITDDLEIECEGKEKFKCGSNVFWKW 145
>PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) (Fragment) Length = 112 Score = 62.4 bits (150), Expect = 3e-10 Identities = 25/27 (92%), Positives = 26/27 (96%) Frame = -2 Query: 159 PFITDDLEIECEGKXKFKCGSNVFWKW 79 PFI+DDLEIECEGK KFKCGSNVFWKW Sbjct: 86 PFISDDLEIECEGKEKFKCGSNVFWKW 112
>PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 171 Score = 55.8 bits (133), Expect = 3e-08 Identities = 20/27 (74%), Positives = 25/27 (92%) Frame = -2 Query: 159 PFITDDLEIECEGKXKFKCGSNVFWKW 79 PFI++D+ +ECEGK K+KCGSNVFWKW Sbjct: 145 PFISEDIALECEGKDKYKCGSNVFWKW 171
>PSAN_VOLCA (Q9SBN5) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 139 Score = 30.8 bits (68), Expect = 1.1 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -2 Query: 156 FITDDLEIECEGKXKFKCGS 97 +I +DL+IECEGK CGS Sbjct: 113 YIAEDLKIECEGKDAKSCGS 132
>LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor (LIF| receptor) (LIF-R) (CD118 antigen) Length = 1093 Score = 27.7 bits (60), Expect = 9.0 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 114 KFKCGSNVFWKW*SWS 67 + +C S FWKW WS Sbjct: 504 RVRCSSETFWKWSKWS 519 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.134 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,164,159 Number of Sequences: 219361 Number of extensions: 185156 Number of successful extensions: 459 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 459 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 459 length of database: 80,573,946 effective HSP length: 28 effective length of database: 74,431,838 effective search space used: 1786364112 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)