ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chl... 64 1e-10
2PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chl... 62 3e-10
3PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chl... 56 3e-08
4PSAN_VOLCA (Q9SBN5) Photosystem I reaction center subunit N, chl... 31 1.1
5LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor ... 28 9.0

>PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N)
          Length = 145

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 26/27 (96%), Positives = 26/27 (96%)
 Frame = -2

Query: 159 PFITDDLEIECEGKXKFKCGSNVFWKW 79
           PFITDDLEIECEGK KFKCGSNVFWKW
Sbjct: 119 PFITDDLEIECEGKEKFKCGSNVFWKW 145



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>PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N) (Fragment)
          Length = 112

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = -2

Query: 159 PFITDDLEIECEGKXKFKCGSNVFWKW 79
           PFI+DDLEIECEGK KFKCGSNVFWKW
Sbjct: 86  PFISDDLEIECEGKEKFKCGSNVFWKW 112



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>PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N)
          Length = 171

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 20/27 (74%), Positives = 25/27 (92%)
 Frame = -2

Query: 159 PFITDDLEIECEGKXKFKCGSNVFWKW 79
           PFI++D+ +ECEGK K+KCGSNVFWKW
Sbjct: 145 PFISEDIALECEGKDKYKCGSNVFWKW 171



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>PSAN_VOLCA (Q9SBN5) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N)
          Length = 139

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 156 FITDDLEIECEGKXKFKCGS 97
           +I +DL+IECEGK    CGS
Sbjct: 113 YIAEDLKIECEGKDAKSCGS 132



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>LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor (LIF|
           receptor) (LIF-R) (CD118 antigen)
          Length = 1093

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 114 KFKCGSNVFWKW*SWS 67
           + +C S  FWKW  WS
Sbjct: 504 RVRCSSETFWKWSKWS 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.134    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,164,159
Number of Sequences: 219361
Number of extensions: 185156
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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