ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41h08 |
|---|---|
| Clone Library Name | barley_pub |
>ROK1_YARLI (Q6CDS6) ATP-dependent RNA helicase ROK1 (EC 3.6.1.-)| Length = 547 Score = 46.6 bits (109), Expect = 4e-05 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSK 300 G + VL+ C + G++ +V+ D+P S YV + RT R G+ F+K Sbjct: 413 GEVWVLI--CTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTK 470 Query: 299 TDATHAKPLADVLANSGQAVPKLLRQL 219 DAT+ K + +V+ SGQ VP L L Sbjct: 471 EDATNVKVVVNVMKQSGQEVPDWLNNL 497
>DDX17_MOUSE (Q501J6) Probable ATP-dependent RNA helicase DDX17 (EC 3.6.1.-)| (DEAD box protein 17) Length = 650 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/70 (35%), Positives = 37/70 (52%) Frame = -3 Query: 422 VEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQA 243 VE+ + V+ D P S + YV + RTAR T G + F+ + A+ L VL + QA Sbjct: 405 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQA 464 Query: 242 VPKLLRQLMD 213 + L QL+D Sbjct: 465 INPKLMQLVD 474
>DDX17_HUMAN (Q92841) Probable ATP-dependent RNA helicase DDX17 (EC 3.6.1.-)| (DEAD box protein 17) (RNA-dependent helicase p72) (DEAD box protein p72) Length = 650 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/70 (35%), Positives = 37/70 (52%) Frame = -3 Query: 422 VEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQA 243 VE+ + V+ D P S + YV + RTAR T G + F+ + A+ L VL + QA Sbjct: 405 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQA 464 Query: 242 VPKLLRQLMD 213 + L QL+D Sbjct: 465 INPKLMQLVD 474
>DDX5_MOUSE (Q61656) Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-)| (DEAD box protein 5) (RNA helicase p68) (DEAD box RNA helicase DEAD1) (mDEAD1) Length = 614 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -3 Query: 422 VEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQA 243 VE+ + V+ D P S + Y+ + RTAR T G + F+ + L VL + QA Sbjct: 407 VEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQA 466 Query: 242 V-PKLLRQLMDK 210 + PKLL+ + D+ Sbjct: 467 INPKLLQLVEDR 478
>DDX5_HUMAN (P17844) Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-)| (DEAD box protein 5) (RNA helicase p68) Length = 614 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -3 Query: 422 VEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQA 243 VE+ + V+ D P S + Y+ + RTAR T G + F+ + L VL + QA Sbjct: 407 VEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQA 466 Query: 242 V-PKLLRQLMDK 210 + PKLL+ + D+ Sbjct: 467 INPKLLQLVEDR 478
>DED1_ASHGO (Q75B50) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 623 Score = 42.0 bits (97), Expect = 9e-04 Identities = 26/85 (30%), Positives = 36/85 (42%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G NVLV + + V+ DLP D YV + RT R G F++ + Sbjct: 451 GRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGN 510 Query: 293 ATHAKPLADVLANSGQAVPKLLRQL 219 K L D+L + Q VP L Q+ Sbjct: 511 KNVVKELVDILEEANQEVPSFLSQI 535
>RM62_DROME (P19109) ATP-dependent RNA helicase p62 (EC 3.6.1.-)| Length = 719 Score = 42.0 bits (97), Expect = 9e-04 Identities = 25/85 (29%), Positives = 38/85 (44%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G N+LV + V+ + V+ D P + + Y+ + RT R G F+K + Sbjct: 579 GKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNN 638 Query: 293 ATHAKPLADVLANSGQAVPKLLRQL 219 A AK L DVL + Q + L L Sbjct: 639 AKQAKALVDVLREANQEINPALENL 663
>DDX4_MOUSE (Q61496) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) (Mvh) Length = 702 Score = 38.5 bits (88), Expect = 0.010 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VLV + +E + V+ DLP + D YV + RT R G F Sbjct: 562 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDS 621 Query: 293 ATH-AKPLADVLANSGQAVPKLLRQL 219 H A+PL VL+++ Q VP L ++ Sbjct: 622 DNHLAQPLVKVLSDAQQDVPAWLEEI 647
>DED1_KLULA (Q6CLR3) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 627 Score = 38.1 bits (87), Expect = 0.013 Identities = 24/86 (27%), Positives = 36/86 (41%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G +LV + + V+ DLP D YV + RT R G F++ + Sbjct: 465 GRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGN 524 Query: 293 ATHAKPLADVLANSGQAVPKLLRQLM 216 AK L +L+ + Q VP L +M Sbjct: 525 KNVAKELVSLLSEANQEVPSFLTTIM 550
>DDX4_HUMAN (Q9NQI0) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) Length = 724 Score = 37.7 bits (86), Expect = 0.017 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VLV + +E + V+ DLP + D YV + RT R G F Sbjct: 589 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 648 Query: 293 ATH-AKPLADVLANSGQAVPKLLRQL 219 H A+PL VL ++ Q VP L ++ Sbjct: 649 DNHLAQPLVKVLTDAQQDVPAWLEEI 674
>DDX4_PIG (Q6GWX0) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) (VASA-like protein) Length = 722 Score = 37.7 bits (86), Expect = 0.017 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VLV + +E + V+ DLP + D YV + RT R G F Sbjct: 587 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 646 Query: 293 ATH-AKPLADVLANSGQAVPKLLRQL 219 H A+PL VL ++ Q VP L ++ Sbjct: 647 DNHLAQPLVKVLTDAQQDVPAWLEEI 672
>DDX4_MACFA (Q4R5S7) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) Length = 725 Score = 37.7 bits (86), Expect = 0.017 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VLV + +E + V+ DLP + D YV + RT R G F Sbjct: 590 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 649 Query: 293 ATH-AKPLADVLANSGQAVPKLLRQL 219 H A+PL VL ++ Q VP L ++ Sbjct: 650 DNHLAQPLVKVLTDAQQDVPAWLEEI 675
>ROK1_ASHGO (Q75AE1) ATP-dependent RNA helicase ROK1 (EC 3.6.1.-)| Length = 569 Score = 37.4 bits (85), Expect = 0.022 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Frame = -3 Query: 446 CESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPL 273 C + G++ +V+ D+P S YV + RT R G F+K DA KP+ Sbjct: 430 CTDVLARGIDFKGINLVINYDVPRSAQAYVHRIGRTGRGGRKGTAVTFFTKQDAIAVKPI 489 Query: 272 ADVLANSG 249 +V+ SG Sbjct: 490 VNVMKQSG 497
>ROK1_KLULA (Q6CSW1) ATP-dependent RNA helicase ROK1 (EC 3.6.1.-)| Length = 579 Score = 37.4 bits (85), Expect = 0.022 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Frame = -3 Query: 446 CESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPL 273 C + GV+ +V+ D+P S YV + RT R +G+ ++K D+ KP+ Sbjct: 439 CTDVLARGVDFKGVNLVINYDVPRSAQAYVHRIGRTGRGGRSGKAITFYTKQDSLAIKPI 498 Query: 272 ADVLANSGQAVPKLLRQL 219 +V+ SG V + ++++ Sbjct: 499 INVMKQSGCEVSEWMQKI 516
>ROK1_SCHPO (Q09775) ATP-dependent RNA helicase rok1 (EC 3.6.1.-)| Length = 481 Score = 37.4 bits (85), Expect = 0.022 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -3 Query: 410 EIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKL 231 ++V+ D P S Y+ + RT R G+ F+K D + K +A V+ +SG VP Sbjct: 358 KMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNW 417 Query: 230 LRQL 219 + L Sbjct: 418 VMAL 421
>ROK1_DEBHA (Q6BP45) ATP-dependent RNA helicase ROK1 (EC 3.6.1.-)| Length = 550 Score = 37.0 bits (84), Expect = 0.029 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = -3 Query: 407 IVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSG 249 +V+ D+P S YV + RT R AG+ F+K D KP+ +V+ SG Sbjct: 432 LVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAVKPIINVMKQSG 484
>VASA_DROME (P09052) ATP-dependent RNA helicase vasa (EC 3.6.1.-) (Antigen| Mab46F11) Length = 661 Score = 37.0 bits (84), Expect = 0.029 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Frame = -3 Query: 473 GXINVLVKGCESLATSG--VEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFS- 303 G + VL+ S+A+ G ++ + V+ D+P D YV + RT R G F Sbjct: 538 GSMKVLI--ATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDP 595 Query: 302 KTDATHAKPLADVLANSGQAVPKLLR 225 + D A L +L SGQ VP LR Sbjct: 596 EKDRAIAADLVKILEGSGQTVPDFLR 621
>ROK1_CANAL (Q9Y7C4) ATP-dependent RNA helicase CHR1 (EC 3.6.1.-)| Length = 578 Score = 36.6 bits (83), Expect = 0.037 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = -3 Query: 407 IVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSG 249 +V+ D+P S YV + RT R AG+ F+K D KP+ +V+ SG Sbjct: 449 LVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILNVMKQSG 501
>DED1_YEAST (P06634) ATP-dependent RNA helicase DED1 (EC 3.6.1.-) (DEAD box| protein 1) Length = 604 Score = 36.6 bits (83), Expect = 0.037 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLR 225 V+ DLP D YV + RT R G F+ ++ K L ++L + Q VP L+ Sbjct: 471 VINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLK 530 Query: 224 QLM 216 M Sbjct: 531 DAM 533
>PRP5_EMENI (Q5BDW4) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC| 3.6.1.-) Length = 1173 Score = 36.6 bits (83), Expect = 0.037 Identities = 22/87 (25%), Positives = 40/87 (45%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VL+ + V++ ++V+ D P + YV RT R G ++ Sbjct: 842 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 901 Query: 293 ATHAKPLADVLANSGQAVPKLLRQLMD 213 ++ +A L SGQ VP+ +++L+D Sbjct: 902 ERYSVDIAKALKQSGQEVPEAVQKLVD 928
>DDX4_RAT (Q64060) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)| (DEAD box protein 4) (VASA homolog) (rVLG) Length = 713 Score = 36.6 bits (83), Expect = 0.037 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VLV + +E + V+ +LP + D YV + RT R G F Sbjct: 574 GKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTES 633 Query: 293 ATH-AKPLADVLANSGQAVPKLLRQL 219 H A+PL VL+++ Q VP L ++ Sbjct: 634 DNHLAQPLVKVLSDAQQDVPAWLEEI 659
>DBP3_ASHGO (Q755A5) ATP-dependent RNA helicase DBP3 (EC 3.6.1.-)| Length = 535 Score = 36.2 bits (82), Expect = 0.049 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G N+L+ + + + V+ P + + YV + RT R G H +F++ + Sbjct: 420 GTANLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGATGVAHTLFTEQE 479 Query: 293 ATHAKPLADVLANSGQAVPKLL 228 A L +VL +GQ VP+ L Sbjct: 480 KHLAGALVNVLNGAGQPVPEEL 501
>ROK1_YEAST (P45818) ATP-dependent RNA helicase ROK1 (EC 3.6.1.-) (Rescuer of| KEM1 protein 1) Length = 564 Score = 36.2 bits (82), Expect = 0.049 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = -3 Query: 446 CESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPL 273 C + G++ +V+ D+P S YV + RT R +G+ ++K D+ KP+ Sbjct: 428 CTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPI 487 Query: 272 ADVLANSGQAVPKLLRQL 219 +V+ SG V + + ++ Sbjct: 488 INVMKQSGCEVSEWMDKM 505
>DED1_DEBHA (Q6BU54) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 630 Score = 36.2 bits (82), Expect = 0.049 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -3 Query: 392 DLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLRQL 219 DLP D YV + RT R G F++ + K L D+L + Q +P L ++ Sbjct: 489 DLPSDIDDYVHRIGRTGRAGNIGIATAFFNRNNKNIVKGLVDLLTEANQEIPDFLNKI 546
>DED1_CANGA (Q8TFK8) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 617 Score = 36.2 bits (82), Expect = 0.049 Identities = 22/86 (25%), Positives = 35/86 (40%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G N+LV + + V+ DLP D YV + RT R G F++ + Sbjct: 451 GRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDN 510 Query: 293 ATHAKPLADVLANSGQAVPKLLRQLM 216 K L ++L + Q +P L + Sbjct: 511 NNIVKGLYEILEEANQEIPPFLEDCL 536
>PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC| 3.6.1.-) Length = 1186 Score = 35.8 bits (81), Expect = 0.064 Identities = 21/87 (24%), Positives = 41/87 (47%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VL+ + V++ ++V+ D P + YV RT R G ++ Sbjct: 855 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQ 914 Query: 293 ATHAKPLADVLANSGQAVPKLLRQLMD 213 ++ +A L SGQ+VP+ +++++D Sbjct: 915 ERYSVDIAKALKQSGQSVPEPVQKMVD 941
>DBP3_KLULA (Q6CT46) ATP-dependent RNA helicase DBP3 (EC 3.6.1.-)| Length = 504 Score = 35.8 bits (81), Expect = 0.064 Identities = 22/84 (26%), Positives = 40/84 (47%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G N+L+ + + + V+ P + + YV + RT R G H +F++ + Sbjct: 389 GKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQE 448 Query: 293 ATHAKPLADVLANSGQAVPKLLRQ 222 A L +VL +GQ VP+ L++ Sbjct: 449 KHLAGALVNVLNGAGQPVPEELKK 472
>ROK1_CANGA (Q6FN65) ATP-dependent RNA helicase ROK1 (EC 3.6.1.-)| Length = 565 Score = 35.8 bits (81), Expect = 0.064 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Frame = -3 Query: 446 CESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPL 273 C + G++ +V+ D+P + YV + RT R +G+ +++K D+ KP+ Sbjct: 430 CTDVLARGIDFKGVNLVINYDVPTTAQAYVHRIGRTGRGGRSGKAVTLYTKLDSVAIKPI 489 Query: 272 ADVLANSG 249 +V+ SG Sbjct: 490 INVMKQSG 497
>DED1_CANAL (Q5A4E2) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 672 Score = 35.8 bits (81), Expect = 0.064 Identities = 22/85 (25%), Positives = 36/85 (42%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G +LV + + V+ DLP D YV + RT R G F++ + Sbjct: 492 GAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNN 551 Query: 293 ATHAKPLADVLANSGQAVPKLLRQL 219 K L ++L+ + Q VP L ++ Sbjct: 552 KNVVKGLIELLSEANQEVPDFLTKI 576
>DBP1_YEAST (P24784) ATP-dependent RNA helicase DBP1 (EC 3.6.1.-) (DEAD box| protein 1) (Helicase CA1) Length = 617 Score = 35.8 bits (81), Expect = 0.064 Identities = 21/66 (31%), Positives = 29/66 (43%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLR 225 V+ DLP D YV + RT R G F+ + K L ++L + Q VP L Sbjct: 483 VINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLS 542 Query: 224 QLMDKN 207 L +N Sbjct: 543 DLSRQN 548
>DBP3_EMENI (Q5AWA6) ATP-dependent RNA helicase dbp3 (EC 3.6.1.-)| Length = 498 Score = 35.4 bits (80), Expect = 0.084 Identities = 22/82 (26%), Positives = 37/82 (45%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VLV + + ++V+ P + + YV + RT R G +F++TD Sbjct: 372 GAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 431 Query: 293 ATHAKPLADVLANSGQAVPKLL 228 + L +VL + Q VP+ L Sbjct: 432 KAQSGALINVLKAANQEVPEAL 453
>PRP5_ASPFU (Q4WT99) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC| 3.6.1.-) Length = 1211 Score = 35.0 bits (79), Expect = 0.11 Identities = 21/87 (24%), Positives = 40/87 (45%) Frame = -3 Query: 473 GXINVLVKGCESLATSGVEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTD 294 G VL+ + V++ ++V+ D P + YV RT R G ++ Sbjct: 876 GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQ 935 Query: 293 ATHAKPLADVLANSGQAVPKLLRQLMD 213 ++ +A L SGQ VP+ +++++D Sbjct: 936 ERYSVDIAKALRQSGQKVPEPVQKMVD 962
>DED1_SCHPO (O13370) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 636 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLL 228 V+ DLP D YV + RT R G+ F++ + AK L ++L + Q P L Sbjct: 502 VINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFL 560
>DED1_ASPFU (Q4WP13) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 674 Score = 34.7 bits (78), Expect = 0.14 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLR 225 V+ DLP D YV + RT R G F++++ + L D+L + Q VP L Sbjct: 522 VINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSNRGVVRELIDLLKEAHQEVPSFLE 581 Query: 224 QL 219 + Sbjct: 582 SI 583
>DED1_ASPOR (Q2UGK3) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)| Length = 675 Score = 33.5 bits (75), Expect = 0.32 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLR 225 V+ DLP D YV + RT R G F++ + + L D+L + Q VP L Sbjct: 520 VINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLE 579 Query: 224 QL 219 + Sbjct: 580 SI 581
>DED1_YARLI (Q6CB69) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 618 Score = 33.1 bits (74), Expect = 0.41 Identities = 18/55 (32%), Positives = 26/55 (47%) Frame = -3 Query: 392 DLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLL 228 DLP D YV + RT R G F++ + + L D+L + Q VP+ L Sbjct: 494 DLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNKGIVRELIDILKEAHQDVPQFL 548
>DED1_GIBZE (Q4I7K4) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 675 Score = 33.1 bits (74), Expect = 0.41 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLR 225 V+ DLP D YV + RT R G F++ + + L D+L + Q VP L Sbjct: 517 VINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELMDLLKEANQEVPAFLE 576 Query: 224 QL 219 + Sbjct: 577 TI 578
>DED1_USTMA (Q4P733) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 672 Score = 32.7 bits (73), Expect = 0.54 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -3 Query: 392 DLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLL 228 DLP D YV + RT R G F++ + + L ++L + Q VP+ L Sbjct: 526 DLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEVPQWL 580
>DED1_NEUCR (Q9P6U9) ATP-dependent RNA helicase ded-1 (EC 3.6.1.-)| Length = 688 Score = 32.0 bits (71), Expect = 0.92 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLR 225 V+ DLP D YV + RT R G F++ + + L ++L + Q VP L Sbjct: 525 VINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELLELLKEANQEVPAFLE 584 Query: 224 QL 219 + Sbjct: 585 TI 586
>DRS1_YEAST (P32892) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-) (Deficiency| of ribosomal subunits protein 1) Length = 752 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Frame = -3 Query: 467 INVLVKGCESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTAR 339 + V V C LA+ G++ + E+V+ D+P S++ Y+ + RTAR Sbjct: 528 LEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTAR 572
>DRS1_CANGA (Q6FW42) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 725 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Frame = -3 Query: 467 INVLVKGCESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTAR 339 + V V C LA+ G++ + E+V+ D+P S++ Y+ + RTAR Sbjct: 503 LQVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTAR 547
>DDX56_MOUSE (Q9D0R4) Probable ATP-dependent RNA helicase DDX56 (EC 3.6.1.-)| (DEAD box protein 56) (ATP-dependent 61 kDa nucleolar RNA helicase) Length = 546 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -3 Query: 443 ESLATSGVEEFEI--VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLA 270 ES G++ + VL DLPP+ + YV RTAR G V + + Sbjct: 342 ESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGKIE 401 Query: 269 DVLANSGQA 243 D+L+ G+A Sbjct: 402 DLLSGEGEA 410
>DRS1_ASHGO (Q75F95) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 734 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%) Frame = -3 Query: 467 INVLVKGCESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTAR 339 ++V V C LA+ G++ + E+V+ D+P +++ Y+ + RTAR Sbjct: 516 LDVPVLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTAR 560
>DRS1_CANAL (Q5ACK7) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 613 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Frame = -3 Query: 467 INVLVKGCESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTAR 339 + V V C LA G++ + E+V+ D+P +F+ Y+ + RTAR Sbjct: 422 LEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTAR 466
>DRS1_KLULA (Q6CJV1) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 748 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Frame = -3 Query: 467 INVLVKGCESLATSGVE--EFEIVLVADLPPSFDXYVEILTRTAR 339 + V V C LA+ G++ + E+V+ D+P +++ Y+ + RTAR Sbjct: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTAR 574
>GLH3_CAEEL (O01836) ATP-dependent RNA helicase glh-3 (EC 3.6.1.-) (Germline| helicase 3) Length = 720 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKP-LADVLANSGQAVPKLL 228 V+ D+P + D Y+ + RT R +G S D P L LA++ Q VP + Sbjct: 635 VINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWM 694 Query: 227 RQ 222 ++ Sbjct: 695 KE 696
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLR 225 V+ D+P + D Y+ + RT R AG F D L VL+++ Q VP+ ++ Sbjct: 889 VINYDMPDNIDDYIHRIGRTGRVGNAGRA-TSFISEDCNLLSELVRVLSDADQLVPEWMQ 947
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = -3 Query: 404 VLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDATHAKPLADVLANSGQAVPKLLR 225 V+ D+P + D Y+ + RT R +G F D + L VLA++ Q VP ++ Sbjct: 678 VINYDMPDNIDDYIHRIGRTGRVGNSGRA-TSFISEDCSLLSELVGVLADAQQIVPDWMQ 736 Query: 224 QLMDKNH 204 N+ Sbjct: 737 GAAGGNY 743
>UB7I3_RAT (Q62921) Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC| protein interacting with PKC) (Protein kinase C-binding protein beta-15) Length = 498 Score = 28.9 bits (63), Expect = 7.8 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +3 Query: 234 LRHCLSTVCKNISQGLCMSSISLREDDMHLP-CNRVTSCPGEDLDIXVKRWRQVRDQHNL 410 LR CL T C+ QG +S +E ++ P + SCPG+ L+ ++ D Sbjct: 285 LRECLHTFCRECLQGTIRNS---QEAEVSCPFIDNTYSCPGKLLEREIRALLSPEDYQ-- 339 Query: 411 KFLD 422 +FLD Sbjct: 340 RFLD 343
>HE64_TRYBB (Q26696) Putative DEAD-box RNA helicase HEL64 (EC 3.6.1.-)| Length = 568 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = -3 Query: 422 VEEFEIVLVADLPPSFDXYVEILTRTARHTVAGEVHVIFSKTDA----THAKPLADVLAN 255 +++ E V+ D P D YV + RT R G + +K +A + K L +L Sbjct: 411 IKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLITKKEAQITPSVLKELIGILER 470 Query: 254 SGQAVP 237 + Q +P Sbjct: 471 AQQEIP 476 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,317,500 Number of Sequences: 219361 Number of extensions: 1296244 Number of successful extensions: 3385 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 3303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3384 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
