ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal41h01 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 124 bits (310), Expect(2) = 8e-48 Identities = 60/60 (100%), Positives = 60/60 (100%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 373 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 368 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427 Score = 86.3 bits (212), Expect(2) = 8e-48 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 325 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 212 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 98.6 bits (244), Expect(2) = 2e-34 Identities = 46/60 (76%), Positives = 54/60 (90%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 373 +GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 378 EGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 2e-34 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -1 Query: 328 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 212 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 95.1 bits (235), Expect(2) = 1e-33 Identities = 44/60 (73%), Positives = 53/60 (88%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 373 +GP FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 378 EGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437 Score = 67.8 bits (164), Expect(2) = 1e-33 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -1 Query: 325 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 212 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 96.3 bits (238), Expect(2) = 7e-33 Identities = 44/60 (73%), Positives = 54/60 (90%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 373 DGP FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 376 DGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 7e-33 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -1 Query: 325 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 218 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 106 bits (264), Expect = 5e-23 Identities = 48/60 (80%), Positives = 56/60 (93%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 373 +GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 365 EGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 105 bits (263), Expect = 7e-23 Identities = 49/60 (81%), Positives = 56/60 (93%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 373 +GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 378 EGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 103 bits (256), Expect = 4e-22 Identities = 47/60 (78%), Positives = 56/60 (93%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 373 +GP FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 368 EGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 102 bits (253), Expect = 9e-22 Identities = 46/59 (77%), Positives = 56/59 (94%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 376 +GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 374 EGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 100 bits (248), Expect = 4e-21 Identities = 47/58 (81%), Positives = 54/58 (93%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 379 DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 382 DGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 99.4 bits (246), Expect = 6e-21 Identities = 46/59 (77%), Positives = 53/59 (89%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 376 DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 382 DGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 98.6 bits (244), Expect = 1e-20 Identities = 45/58 (77%), Positives = 55/58 (94%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 379 +GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 378 EGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 96.3 bits (238), Expect = 5e-20 Identities = 45/56 (80%), Positives = 52/56 (92%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 385 DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 377 DGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 94.0 bits (232), Expect = 3e-19 Identities = 41/59 (69%), Positives = 57/59 (96%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 376 +GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 380 EGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 90.5 bits (223), Expect = 3e-18 Identities = 41/59 (69%), Positives = 54/59 (91%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 376 +GP TF+QPKMT++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 382 EGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 58.9 bits (141), Expect = 9e-09 Identities = 26/35 (74%), Positives = 32/35 (91%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 448 + P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 375 ESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/42 (52%), Positives = 28/42 (66%) Frame = -2 Query: 543 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 418 V + M + L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 353 VAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 34.7 bits (78), Expect = 0.18 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -2 Query: 552 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 436 +GP F++P T+ L+E + +V EQ ++ QL D Y Sbjct: 251 EGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>ACSL4_MOUSE (Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (LACS 4) (mACS4) Length = 711 Score = 31.6 bits (70), Expect = 1.6 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -1 Query: 133 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLLCCKQN 8 +N+ LN+L+I + P+HLLI +S F+ W L K+N Sbjct: 1 MNLKLNVLTIILL--PVHLLITIYSALIFIPWYFLTNAKKKN 40
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = -2 Query: 543 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 388 VTF +T E K +E H +QE NVK + + D A N M+ Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337 Query: 387 GSFYG*KILHTHPPSLAA 334 GSF I+ HP ++A Sbjct: 338 GSFTAQVIILNHPGQISA 355
>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)| Length = 464 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Frame = -2 Query: 543 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 388 VTF +T E K +E H +QE NVK + + D A N A +T Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337 Query: 387 GSFYG*KILHTHPPSLAA 334 F I+ HP ++A Sbjct: 338 KMFTAQVIIMNHPGQISA 355
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 440 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 544 + +SC+R TL T CP SS +TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2| Length = 1019 Score = 29.6 bits (65), Expect = 5.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 97 WQRPIHLLIICHSQYSFLQW 38 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)| Length = 1020 Score = 29.6 bits (65), Expect = 5.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 97 WQRPIHLLIICHSQYSFLQW 38 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)| Length = 462 Score = 29.3 bits (64), Expect = 7.8 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Frame = -2 Query: 543 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 388 VTF +T E K +E H + E NVK V + D A N M+ Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337 Query: 387 GSFYG*KILHTHPPSLAA 334 GSF I+ HP + A Sbjct: 338 GSFTAQVIILNHPGQIGA 355
>ACSL4_HUMAN (O60488) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 4) (LACS 4) Length = 711 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -1 Query: 133 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLLLCCKQN 8 + + LN+L+I + P+HLLI +S F+ W L K+N Sbjct: 1 MKLKLNVLTIILL--PVHLLITIYSALIFIPWYFLTNAKKKN 40 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,145,236 Number of Sequences: 219361 Number of extensions: 1618059 Number of successful extensions: 4322 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4321 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
