>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 208  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 95
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3735 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3771

>UVRC_VIBF1 (Q5E4C5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 608

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 62  TKALYSLSHCSNAPITGAANKAISLSYNHVYMPLPKY 172
           TKAL S  H  +  +T +  +A+ L +N++   LPKY
Sbjct: 55  TKALVSHIHQVDVTVTHSETEALILEHNYIKQYLPKY 91

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 208  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 95
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3737 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3773

>HISX_LEGPL (Q5WX91) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 431

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +2

Query: 62  TKALYSLS--HCSNAPITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKATSILVGSI 235
           T+A+ ++S  H S  P     + A  ++  +VY P+ K   YVP    T   +S+L+ +I
Sbjct: 83  TQAIGTISSYHQSLLPENTEISTASGITIRNVYRPIQKVGLYVPGGNKTPLVSSLLMQAI 142

Query: 236 TLRTMKSACLLRCQGAGKTESLKEYILL 319
             +       + C        + E+IL+
Sbjct: 143 PAKVAGCPIKVLCTPPDAEGEINEHILV 170

>HISX_LEGPH (Q5ZW87) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 431

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +2

Query: 62  TKALYSLS--HCSNAPITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKATSILVGSI 235
           T+A+ ++S  H S  P     + A  ++  +VY P+ K   YVP    T   +S+L+ +I
Sbjct: 83  TQAIGTISSYHQSLLPENTEISTASGITIRNVYRPIQKVGLYVPGGNKTPLVSSLLMQAI 142

Query: 236 TLRTMKSACLLRCQGAGKTESLKEYILL 319
             +       + C        + E+IL+
Sbjct: 143 PAKVAGCPIKVLCTPPDAEGEINEHILV 170

>OGG1_RAT (O70249) N-glycosylase/DNA lyase [Includes: 8-oxoguanine DNA|
           glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic
           site) lyase (EC 4.2.99.18) (AP lyase)]
          Length = 345

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 505 RSTIEKPSIWAACPCPDKGLI*ESVLKRPSDLNRREMLSNIWSFV 371
           R+    P++WA+ PCP   L  + VL        RE     WS V
Sbjct: 14  RTLTSSPALWASIPCPRSELRLDLVLASGQSFRWREQSPAHWSGV 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,031,626
Number of Sequences: 219361
Number of extensions: 1839387
Number of successful extensions: 4149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4148
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)