ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9a22 |
|---|---|
| Clone Library Name | barley_pub |
>PWP2_NEUCR (Q9C270) Periodic tryptophan protein 2 homolog| Length = 899 Score = 37.0 bits (84), Expect = 0.033 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -1 Query: 363 LLDLPSFEEMGTLS-SKTEVKTIELAQGPSWLLFTGDGAGELKVWTWASQ 217 L ++P F + TLS S+ E+ + + + WL F G+L VW W S+ Sbjct: 280 LYEMPDFNMIHTLSISQNEIDFVTINKSGEWLAFGASKLGQLLVWEWQSE 329
>PWP2_YEAST (P25635) Periodic tryptophan protein 2 (U3 small nucleolar| RNA-associated protein 1) (U3 snoRNA-associated protein 1) Length = 923 Score = 35.0 bits (79), Expect = 0.13 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 366 RLLDLPSFEEMGTLS-SKTEVKTIELAQGPSWLLFTGDGAGELKVWTWASQ 217 RL DLP F + LS + V T+ + Q WL F G+L V+ W S+ Sbjct: 285 RLYDLPDFTLIQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSE 335
>PWP2_MOUSE (Q8BU03) Periodic tryptophan protein 2 homolog| Length = 919 Score = 34.3 bits (77), Expect = 0.21 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 363 LLDLPSFEEMGTLS-SKTEVKTIELAQGPSWLLFTGDGAGELKVWTWASQ 217 L +LP F + +LS S V ++ + W+ F G G+L VW W S+ Sbjct: 314 LHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGMGQLLVWEWQSE 363
>PWP2_HUMAN (Q15269) Periodic tryptophan protein 2 homolog| Length = 919 Score = 33.9 bits (76), Expect = 0.28 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 363 LLDLPSFEEMGTLS-SKTEVKTIELAQGPSWLLFTGDGAGELKVWTWASQ 217 L +LP F + +LS S + ++ + W+ F G G+L VW W S+ Sbjct: 314 LHELPEFNLIHSLSISDQSIASVAINSSGDWIAFGCSGLGQLLVWEWQSE 363
>ZAN_RABIT (P57999) Zonadhesin (Fragment)| Length = 2282 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = +3 Query: 321 TRACPSPRTMAGPTGGR--SCACGGSTTEPASFPDDACQRGC 440 T PSP T++ P SCAC S P + CQ GC Sbjct: 490 TTTTPSPTTVSCPANAHYESCACPASCKHPKASCKPPCQPGC 531
>PWP2_SCHPO (Q9C1X1) Periodic tryptophan protein 2 homolog| Length = 854 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 363 LLDLPSFEEMGTLS-SKTEVKTIELAQGPSWLLFTGDGAGELKVWTWASQ 217 + +LPSF + LS +++ + T+ + W+ G+L VW W S+ Sbjct: 280 IYELPSFTMLYQLSITQSNIDTLTVNSTGDWIAIGSSKLGQLLVWEWQSE 329
>WDR34_HUMAN (Q96EX3) WD-repeat protein 34| Length = 536 Score = 30.4 bits (67), Expect = 3.1 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Frame = -1 Query: 480 LQLMHTHSEEHGVRTLFGMHRPGKTPVLLCSLHKRSCVRLLDLPSFEEMGTLSSK----- 316 LQ S + ++ LF + P++ + + V+L DL + T+ K Sbjct: 423 LQAPPLTSLQLSLKYLFAVRWSPVRPLVFAAASGKGDVQLFDLQKSSQKPTVLIKQTQDE 482 Query: 315 TEVKTIELAQGPSWLLFTGDGAGELKVWTWASQDEELAP 199 + V +E + LL GD G +KVW +++ E P Sbjct: 483 SPVYCLEFNSQQTQLLAAGDAQGTVKVWQLSTEFTEQGP 521
>LEG3_CANFA (P38486) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 295 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = +3 Query: 333 PSPRTMAGPTGGRSCACGG--STTEPASFPDDACQRGCAHHAPQSGY 467 P+P+ GP G + GG + P ++P A G AP GY Sbjct: 16 PNPQGWPGPWGNQPAGAGGYPGASYPGAYPGQAPPGGYPGQAPPGGY 62
>XPO6B_XENLA (Q6NTZ5) Exportin-6-B| Length = 1138 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +2 Query: 200 GASSSSWDAHVHTLSSPAPSPVKSSHDGPWASSMVFTSVLDE--SVPISSNDGRSNRRTQ 373 G S WD H T ++P PSP S D S+++ T L + S P S + S R Sbjct: 189 GVLESIWDKHSITAATPPPSPTASDTD-DLLSNLIHTPNLTKQLSQPPPSLEAESERVCA 247 Query: 374 LRL 382 L L Sbjct: 248 LAL 250
>XPO6A_XENLA (Q53I77) Exportin-6-A| Length = 1135 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +2 Query: 200 GASSSSWDAHVHTLSSPAPSPVKSSHDGPWASSMVFTSVLDE--SVPISSNDGRSNRRTQ 373 G S WD H T ++P PSP S D S+++ T L + S P S + S R Sbjct: 189 GVLESIWDKHSITAATPPPSPTASDTD-DLLSNLIHTPNLTKQLSQPPPSLEAESERVCA 247 Query: 374 LRL 382 L L Sbjct: 248 LAL 250
>CH10_ZYMMO (P48229) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 95 Score = 30.0 bits (66), Expect = 4.0 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = -3 Query: 424 ASSGKDAGSVVLPPQAQLRPPVGPAIVRGDGHALVQNRSEDHRTRPRAIVAAFHRGWRGR 245 A+ K AG +++P A+ +P G I G+G SED + P + A R G+ Sbjct: 16 AAEEKTAGGIIIPDTAKEKPQEGEVIAAGNG-----THSEDGKVVPLDVKAG-DRVLFGK 69 Query: 244 AQGVDVGV 221 G +V V Sbjct: 70 WSGTEVRV 77
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = +2 Query: 176 TFMAAPVLGASSS---SWDAHVHTLSSPAPSPVKSSHDGPWASSMVFTSVLDESVPISSN 346 T + P+L +SSS S + LS+ PSP +S P A+++ ++ + S+P+SS Sbjct: 1271 THTSVPLLPSSSSISASSPSSTSLLSTSLPSPAFTSSTLPTATAVSSSTFIASSLPLSSK 1330 Query: 347 DGRS 358 S Sbjct: 1331 SSLS 1334
>PRIM_CHLMU (Q9PLC9) DNA primase (EC 2.7.7.-)| Length = 600 Score = 29.6 bits (65), Expect = 5.3 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%) Frame = -1 Query: 441 RTLFGMH----RPGKTPVLLCSLHKRSCVRLLDLP---SFEEMGTLSSKTEVKT-IELAQ 286 R L+G+ R K ++ + C++++D + GT ++T VK ++L Sbjct: 237 RVLYGLQFSRKRIAKEKRVILVEGQADCLQMIDFGFNCTLAAQGTSFTETHVKELVKLGV 296 Query: 285 GPSWLLFTGDGAGELKVWTWASQDEELAPNTGAAINVC 172 ++LLF GD AGE + + +L G A+ VC Sbjct: 297 SKAYLLFDGDAAGEKA----SLRVGDLCQVAGIAVIVC 330
>EGR1_POEGU (O73693) Early growth response protein 1 (EGR-1) (Zinc finger| protein ZENK) (Fragment) Length = 193 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 185 AAPVLGASSSSWDAHVHTLSSPAPSPVKSSHDGPWASSM---VFTSVLDESVPISSNDGR 355 A+P+ SSS ++ ++++ PSPV++++ P SS V T+ S+ + G Sbjct: 91 ASPIPAYSSSVTTSYPSSITTTYPSPVRTAYSSPAPSSYPSPVHTTFPSPSIATTYPSGT 150 Query: 356 SNRRTQL 376 + +TQ+ Sbjct: 151 ATFQTQV 157
>BCCA_MYCLE (P46392) Acetyl-/propionyl-coenzyme A carboxylase alpha chain| [Includes: Biotin carboxylase (EC 6.3.4.14); Biotin carboxyl carrier protein (BCCP)] Length = 598 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = -3 Query: 445 CAHPLWHASSGKDAGSVVLP---PQAQLRPPVGPAI 347 C H + +G+DAG LP P ++ PP GP + Sbjct: 337 CGHAIEFRINGEDAGRNFLPSPGPVSKFHPPTGPGV 372
>CYSJ_ZYMMO (Q5NRM1) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 606 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = -3 Query: 451 AWCAHPLWHASSGKDAGSVVLPPQAQLRPPVGPAIV 344 AW + LW SSG D + LP PV P ++ Sbjct: 33 AWISGYLWGRSSGADTTNQSLPTSPATEQPVEPTVI 68
>GALR3_HUMAN (O60755) Galanin receptor type 3 (GAL3-R) (GALR3)| Length = 368 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = -2 Query: 359 WTCHRSRRWARSRPKQK*RPSNSPKGHRGCFSPGMARASSR 237 W C R RR R ++ RP++S G GC PG AR S R Sbjct: 306 WPCGRRRRHRARRALRRVRPASS--GPPGC--PGDARPSGR 342
>LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type f| polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = +2 Query: 206 SSSSWDAHVHTLSSPAPSPVKSSHDGPWASSMVFTSVL 319 S + W H + AP+ K S +G WA VF L Sbjct: 977 SGNVWVTHEEMENLTAPAKTKESEEGSWAQCPVFLQTL 1014
>LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type f| polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = +2 Query: 206 SSSSWDAHVHTLSSPAPSPVKSSHDGPWASSMVFTSVL 319 S + W H + AP+ K S +G WA VF L Sbjct: 977 SGNVWVTHEEMENLAAPAKTKESEEGSWAQCPVFLQTL 1014
>FABH2_VIBVY (Q7M7I3) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 (EC| 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III protein 2) (Beta-ketoacyl-ACP synthase III 2) (KAS III 2) Length = 362 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -3 Query: 454 GAWCAHPLWHASSGKDAGSVVLPPQAQLR 368 G+ AH L HA KD +VV+P QA +R Sbjct: 228 GSAAAHVLAHAGMSKDDINVVIPHQANIR 256
>FABH2_VIBVU (Q8D719) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 (EC| 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III protein 2) (Beta-ketoacyl-ACP synthase III 2) (KAS III 2) Length = 362 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -3 Query: 454 GAWCAHPLWHASSGKDAGSVVLPPQAQLR 368 G+ AH L HA KD +VV+P QA +R Sbjct: 228 GSAAAHVLAHAGMSKDDINVVIPHQANIR 256
>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) (M-Delta-3) Length = 592 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 354 GPTGGRSCACGGSTTEPASFPDDACQRG 437 GP G CA GGS +E + + AC RG Sbjct: 274 GPCDGNPCANGGSCSETSGSFECACPRG 301 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,951,655 Number of Sequences: 219361 Number of extensions: 1688004 Number of successful extensions: 5984 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5982 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
