ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41f23 |
|---|---|
| Clone Library Name | barley_pub |
>HKT6_ORYSA (Q6H501) Probable cation transporter HKT6 (OsHKT6)| Length = 530 Score = 209 bits (532), Expect = 5e-54 Identities = 102/135 (75%), Positives = 114/135 (84%) Frame = -2 Query: 596 GYTSFLPNYDDRYSKDEKRYNRKGLLEDWILSQLSYLAIFVMLICITEREALTTDPLNFN 417 GYTSFLP +D SK EK RKGLLE+WI S +SYLAIFVMLICITER+++ TDPLNFN Sbjct: 397 GYTSFLPRHDGEDSKTEKINKRKGLLENWIFSHMSYLAIFVMLICITERDSMATDPLNFN 456 Query: 416 VLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGR 237 V SILFEVV AYGNVG S+GYSCKRLL D RCKDASYGFAG+WS+ GK ILIIVM+FGR Sbjct: 457 VFSILFEVV-AYGNVGFSVGYSCKRLLNHDARCKDASYGFAGKWSDNGKAILIIVMLFGR 515 Query: 236 LKASNLKGGKAWKLR 192 LK N+KGG+AWKLR Sbjct: 516 LKTFNMKGGRAWKLR 530
>HKT7_ORYSA (Q7XPF7) Probable cation transporter HKT7 (OsHKT7)| Length = 500 Score = 157 bits (396), Expect = 3e-38 Identities = 81/134 (60%), Positives = 96/134 (71%), Gaps = 1/134 (0%) Frame = -2 Query: 593 YTSFLPNYDDRYSKDEKRYNRK-GLLEDWILSQLSYLAIFVMLICITEREALTTDPLNFN 417 YT++ P ++ +KD N+ LLE +LSQLSYL IFV+ ICITER L DPLNF+ Sbjct: 366 YTTWFPFEENSTTKDSNAENQGIRLLESTLLSQLSYLTIFVIAICITERRKLKEDPLNFS 425 Query: 416 VLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGR 237 VLSI+ EVVSAYGNVG SMGYSC R + D C D GF GRWS+ GK+ILI VM FGR Sbjct: 426 VLSIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDSGKLILIFVMFFGR 485 Query: 236 LKASNLKGGKAWKL 195 LK ++KGGKAWKL Sbjct: 486 LKKFSMKGGKAWKL 499
>HKT4_ORYSA (Q7XPF8) Cation transporter HKT4 (OsHKT4)| Length = 552 Score = 139 bits (350), Expect = 6e-33 Identities = 67/126 (53%), Positives = 93/126 (73%), Gaps = 2/126 (1%) Frame = -2 Query: 587 SFLPNYDDRYSKDEKRYNR--KGLLEDWILSQLSYLAIFVMLICITEREALTTDPLNFNV 414 SFL D +K+ N + L ++ +++LS LA+F L CITER+++++DPLNFN+ Sbjct: 427 SFLTANADNQPLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKSISSDPLNFNI 486 Query: 413 LSILFEVVSAYGNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRL 234 SI+FE++SA+GNVG S+GYSC++LLK D CKDASYGF GRW+ EGK+I+I+VM GRL Sbjct: 487 FSIVFEIISAFGNVGYSLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILVMFLGRL 546 Query: 233 KASNLK 216 K LK Sbjct: 547 KEFILK 552
>HKT1_ARATH (Q84TI7) Sodium transporter HKT1 (AtHKT1)| Length = 506 Score = 133 bits (335), Expect = 3e-31 Identities = 74/143 (51%), Positives = 93/143 (65%), Gaps = 10/143 (6%) Frame = -2 Query: 593 YTSFLPNYD---------DRYSKDEKRYNRKGLLEDWILSQLSYLAIFVMLICITEREAL 441 YT F+P + D S++ K+ + GL I+SQLS+L I + LI ITER+ L Sbjct: 363 YTLFMPLTEQKTIEKEGGDDDSENGKKVKKSGL----IVSQLSFLTICIFLISITERQNL 418 Query: 440 TTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLK-QDLRCKDASYGFAGRWSNEGKMI 264 DP+NFNVL+I EV+SAYGNVG + GYSC+R + D CKDASYGFAGRWS GK + Sbjct: 419 QRDPINFNVLNITLEVISAYGNVGFTTGYSCERRVDISDGGCKDASYGFAGRWSPMGKFV 478 Query: 263 LIIVMVFGRLKASNLKGGKAWKL 195 LIIVM +GR K K G+AW L Sbjct: 479 LIIVMFYGRFKQFTAKSGRAWIL 501
>HKT8_ORYSA (Q3YAF4) Cation transporter HKT8 (OsHKT8)| Length = 554 Score = 132 bits (333), Expect = 6e-31 Identities = 63/138 (45%), Positives = 97/138 (70%), Gaps = 5/138 (3%) Frame = -2 Query: 593 YTSFLPNYDDRYSKDEKRYNRKG-----LLEDWILSQLSYLAIFVMLICITEREALTTDP 429 YT+F+P D++ + + ++G + + ++S LS LAIF+++ICITER + DP Sbjct: 417 YTTFVP-VQDKHQQTGAQSGQEGSSSSSIWQKLLMSPLSCLAIFIVVICITERRQIADDP 475 Query: 428 LNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVM 249 +N++VL+I+ EV+SAYGNVG S GYSC R ++ D C+D GF+G+WS +GK+ L+ VM Sbjct: 476 INYSVLNIVVEVISAYGNVGFSTGYSCARQVRPDGSCRDLWVGFSGKWSKQGKLTLMAVM 535 Query: 248 VFGRLKASNLKGGKAWKL 195 +GRLK +L GG+AWK+ Sbjct: 536 FYGRLKKFSLHGGQAWKI 553
>HKT1_ORYSA (Q6TPH3) Cation transporter HKT1 (OsHKT1) (Ni-OsHKT1) (Po-OsHKT1)| Length = 530 Score = 119 bits (297), Expect = 9e-27 Identities = 60/135 (44%), Positives = 91/135 (67%), Gaps = 3/135 (2%) Frame = -2 Query: 590 TSFLPNYDDRYSKDEKRYNRKGLL-EDWILSQLSYLAIFVMLICITEREALTTDPLNFNV 414 T+F + D + ++K + GL+ ++ SQL+ +++FV++ ITER L DPLNF+ Sbjct: 395 TTFALSNGDEKTANKKAKRKLGLVVQNLAFSQLACISVFVIVAFITERSRLRNDPLNFSA 454 Query: 413 LSILFEVVSAYGNVGLSMGYSCKRL--LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFG 240 L+++FE++SAYGNVGLS GYSC RL L C+D Y +G WS+EGK++L+ VM++G Sbjct: 455 LNMIFEIISAYGNVGLSTGYSCSRLQKLHPGSICQDKPYSLSGWWSDEGKLLLVFVMLYG 514 Query: 239 RLKASNLKGGKAWKL 195 RLKA G+ W+L Sbjct: 515 RLKAFTKGTGEYWRL 529
>HKT2_ORYSA (Q93XI5) Cation transporter HKT2 (OsHKT2) (Po-OsHKT2)| Length = 530 Score = 116 bits (290), Expect = 6e-26 Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 3/135 (2%) Frame = -2 Query: 590 TSFLPNYDDRYSKDEKRYNRKGLL-EDWILSQLSYLAIFVMLICITEREALTTDPLNFNV 414 T+F + D + ++K + GL+ + SQL+ A+FV++ ITER L DPLNF+ Sbjct: 395 TTFALSNGDEKTANKKAKRKLGLVVRNLAFSQLACNAVFVIVALITERSRLRNDPLNFSA 454 Query: 413 LSILFEVVSAYGNVGLSMGYSCKRL--LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFG 240 L+++FEV+SAYGNVGL+ GYSC RL L C+D Y +G WS+EGK++L+ VM++G Sbjct: 455 LNMIFEVISAYGNVGLTTGYSCSRLQKLHPGSICQDKPYSLSGWWSDEGKLLLVSVMLYG 514 Query: 239 RLKASNLKGGKAWKL 195 RLKA G+ W+L Sbjct: 515 RLKAFTKGTGEYWRL 529
>HKT9_ORYSA (Q8L4K5) Probable cation transporter HKT9 (OsHKT9)| Length = 509 Score = 114 bits (285), Expect = 2e-25 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 2/121 (1%) Frame = -2 Query: 578 PNYDDRYSKDEKRYNRKGLLEDWILSQLSYLAIFVMLICITEREALTTDPLNFNVLSILF 399 P DDR SK K L+ S L++ +ML+CITER +++TDPLNF+ +I+F Sbjct: 388 PESDDRTSKG------KPFLKTMAFSPLAFNTTVIMLVCITERRSISTDPLNFSTFNIIF 441 Query: 398 EVVSAYGNVGLSMGYSCKRLLKQD--LRCKDASYGFAGRWSNEGKMILIIVMVFGRLKAS 225 EV+SAYGN+GLS GYSC R L+ + C + Y F+G WS GK+IL++ M++GRL + Sbjct: 442 EVISAYGNIGLSTGYSCSRQLQHQDGIACHEKPYSFSGWWSEPGKLILVLAMLYGRLNSK 501 Query: 224 N 222 + Sbjct: 502 D 502
>HKT3_ORYSA (Q8L481) Probable cation transporter HKT3 (OsHKT3)| Length = 509 Score = 110 bits (276), Expect = 2e-24 Identities = 55/121 (45%), Positives = 78/121 (64%), Gaps = 2/121 (1%) Frame = -2 Query: 578 PNYDDRYSKDEKRYNRKGLLEDWILSQLSYLAIFVMLICITEREALTTDPLNFNVLSILF 399 P DDR SK K L+ S L + +ML+CITER +L+TDPLN + +I+F Sbjct: 388 PESDDRTSKG------KPFLKMMAFSPLGFNTTVIMLVCITERRSLSTDPLNLSTFNIIF 441 Query: 398 EVVSAYGNVGLSMGYSCKRLL--KQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKAS 225 EV+SAYGN+GLS GYSC R L ++ + C + +Y F+G WS GK+IL++ M+ GRL + Sbjct: 442 EVISAYGNIGLSTGYSCSRQLQHQEGIACHEKAYNFSGWWSEPGKLILVLAMLCGRLNSK 501 Query: 224 N 222 + Sbjct: 502 D 502
>TRK1_YEAST (P12685) High-affinity potassium transport protein| Length = 1235 Score = 56.2 bits (134), Expect = 7e-08 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 1/100 (1%) Frame = -2 Query: 533 RKGLLED-WILSQLSYLAIFVMLICITEREALTTDPLNFNVLSILFEVVSAYGNVGLSMG 357 RK L D W L +L +F++ IC ++ +P NFN+ +ILFE+VSAYG VGLS+G Sbjct: 1076 RKQLSFDLWFL----FLGLFIICICEGDKIKDVQEP-NFNIFAILFEIVSAYGTVGLSLG 1130 Query: 356 YSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGR 237 Y D + F+ +++ K+++I +++ G+ Sbjct: 1131 Y------------PDTNQSFSRQFTTLSKLVIIAMLIRGK 1158
>TRK1_SACBA (P28569) High-affinity potassium transport protein| Length = 1241 Score = 53.5 bits (127), Expect = 4e-07 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Frame = -2 Query: 497 LSYLAIFVMLICITEREALTT-DPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLR 321 L +L + + +ICI ER+ + NFNV +ILFE+VSAYG VGLS+GY Sbjct: 1089 LWFLFLGLFIICICERDKIKDIQRPNFNVFTILFEIVSAYGTVGLSLGY----------- 1137 Query: 320 CKDASYGFAGRWSNEGKMILIIVMVFGR 237 + + F+ + + K+I+I +++ G+ Sbjct: 1138 -PNTNQSFSRQLTTLSKLIIIAMLIRGK 1164
>TRK2_YEAST (P28584) Low-affinity potassium transport protein| Length = 889 Score = 51.6 bits (122), Expect = 2e-06 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%) Frame = -2 Query: 545 KRYNRKGLLEDWILSQLS----YLAIFVMLICITE-REALTTDPLNFNVLSILFEVVSAY 381 K+ + K + + QLS YL + + +ICI E R+ + +FNV +ILFEVVSAY Sbjct: 729 KKQSPKSFVGAHLRRQLSFDLWYLFLGLFIICICEGRKIEDVNKPDFNVFAILFEVVSAY 788 Query: 380 GNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGR 237 G VGLS+GY + + + +++ K+++I +++ GR Sbjct: 789 GTVGLSLGY------------PNTNTSLSAQFTVLSKLVIIAMLIRGR 824
>TRK1_SCHPO (P47946) Potassium transport protein 1| Length = 841 Score = 50.1 bits (118), Expect = 5e-06 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Frame = -2 Query: 530 KGLLEDWILSQLSYLAIFVML----ICITEREALTTDPLN--FNVLSILFEVVSAYGNVG 369 K L+D + QLSY ++ L ICI E ++ +PL+ F++ ++LFEVVSAYG VG Sbjct: 704 KSFLKDHLTEQLSYDLWYIFLGLFIICICEGGKIS-NPLDTDFSIFTVLFEVVSAYGTVG 762 Query: 368 LSMGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGR 237 LS G S ++ + R++ K+++I + + GR Sbjct: 763 LSTGLS------------SSNCSLSARFTTISKLVIIALELRGR 794
>TRK2_SCHPO (Q10065) Potassium transport protein 2| Length = 880 Score = 47.4 bits (111), Expect = 3e-05 Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Frame = -2 Query: 593 YTSFLPNYDDRY----SKDEKRYNRKGLLEDWILSQLS----YLAIFVMLICITEREALT 438 Y + N DD + D RK L D I QLS YL + +I I E L Sbjct: 721 YAADTENDDDNNINNNNNDNNTPKRKNFLMDHIQRQLSHDLWYLFLGYFIITIVEGRRLE 780 Query: 437 TDPL-NFNVLSILFEVVSAYGNVGLSMGY 354 ++ F + +ILFEV+S YG VGLS+GY Sbjct: 781 SEAEPQFTLFAILFEVISGYGTVGLSLGY 809
>NTPJ_ENTHR (P43440) V-type sodium ATP synthase subunit J (EC 3.6.3.14)| (Na(+)-translocating ATPase subunit J) Length = 451 Score = 35.4 bits (80), Expect = 0.13 Identities = 28/88 (31%), Positives = 42/88 (47%) Frame = -2 Query: 497 LSYLAIFVMLICITEREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRC 318 LS + +M++ +TE T P + I FEV SA+G VGL+MG L DL Sbjct: 358 LSLCVVAIMVLSVTE-----TIPKTSGIEYIAFEVFSAFGTVGLTMG------LTPDL-- 404 Query: 317 KDASYGFAGRWSNEGKMILIIVMVFGRL 234 + GK+++I +M GR+ Sbjct: 405 -----------TLIGKLVIISLMYIGRV 421
>PQIA_SHIFL (P0AFM1) Paraquat-inducible protein A| Length = 417 Score = 32.7 bits (73), Expect = 0.81 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -1 Query: 327 PTLQGCFI-WVCWKMEQRGENDSDHCHGLREA*GVQFEGRKSM 202 PTL+ I W+CW + G+ DS+ H + E V+F GR SM Sbjct: 316 PTLKMIAIAWLCWDAKGHGKRDSERMHLIYEV--VEFVGRWSM 356
>PQIA_ECOLI (P0AFL9) Paraquat-inducible protein A| Length = 417 Score = 32.7 bits (73), Expect = 0.81 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -1 Query: 327 PTLQGCFI-WVCWKMEQRGENDSDHCHGLREA*GVQFEGRKSM 202 PTL+ I W+CW + G+ DS+ H + E V+F GR SM Sbjct: 316 PTLKMIAIAWLCWDAKGHGKRDSERMHLIYEV--VEFVGRWSM 356
>PQIA_ECOL6 (P0AFM0) Paraquat-inducible protein A| Length = 417 Score = 32.7 bits (73), Expect = 0.81 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -1 Query: 327 PTLQGCFI-WVCWKMEQRGENDSDHCHGLREA*GVQFEGRKSM 202 PTL+ I W+CW + G+ DS+ H + E V+F GR SM Sbjct: 316 PTLKMIAIAWLCWDAKGHGKRDSERMHLIYEV--VEFVGRWSM 356
>LGT_AZOBR (Q8KSV0) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 268 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Frame = -2 Query: 422 FNVLSILFEVVSAYGNVGLS-----MGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILI 258 F +L+IL + + G G++ +GY R++ + R DA GF + G+++ + Sbjct: 189 FVLLAILVRMPAVRGRAGMTAGIFFIGYGLSRIIAEFFREPDAQLGFLYAGATMGQLLSV 248 Query: 257 IVMVFG 240 +++FG Sbjct: 249 PMVLFG 254
>UNG_BACSU (P39615) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 225 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = -2 Query: 338 LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWK 198 L+QD+ C ++G W+ +G ++L V+ R +A++ K GK W+ Sbjct: 97 LQQDIGCSIPNHGSLVSWAKQGVLLLNTVLTVRRGQANSHK-GKGWE 142
>UNG2_LISMF (Q720K2) Uracil-DNA glycosylase 2 (EC 3.2.2.-) (UDG 2)| Length = 224 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = -2 Query: 338 LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWKLR*HQLCE 174 L DL C+ + G+ RW+++G ++L V+ R +N G+ W++ +++ E Sbjct: 96 LHNDLNCEIPNNGYLIRWADQGVLLLNTVLTV-RAGQANSHRGQGWEILTNRIIE 149
>5HT1F_CAVPO (O08890) 5-hydroxytryptamine 1F receptor (5-HT-1F) (Serotonin| receptor 1F) (5-HT1F) Length = 366 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%) Frame = -1 Query: 450 RSTDHRST*FQCFEHTVRSCKC------IWKRGLVNGLQLQEATQTRPTLQGCFIWVCW 292 +S ST F +TV+S +C W+R ++G + ++A T + G F+ +CW Sbjct: 249 KSLSDPSTDFDKIHNTVKSPRCKLRHEKSWRRQKISGTRERKAATTLGLILGAFV-ICW 306
>TRXB_BORBU (P94284) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 326 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 2 IFLXXYXYRHKEQIIREGKAPM*TSTLQAFTIFFMLSVAVCYVC 133 ++ Y Y+ K II G P TL+ +F+ ++VC +C Sbjct: 116 LYTENYIYKSKAVIIAVGSKPKKLETLKNSGLFWNKGISVCAIC 159
>UNG2_LISIN (Q92CI1) Uracil-DNA glycosylase 2 (EC 3.2.2.-) (UDG 2)| Length = 224 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = -2 Query: 338 LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWKLR*HQLCE 174 L DL C+ + G+ W+++G ++L V+ R +N G+ W+L +++ E Sbjct: 96 LHNDLNCEIPNNGYLIPWADQGVLLLNTVLTV-RAGQANSHRGQGWELLTNRIIE 149
>UNG_RHIME (Q92LU5) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 241 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/47 (29%), Positives = 28/47 (59%) Frame = -2 Query: 338 LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWK 198 L++DL A +GF W+ +G ++L V+ R +A++ + G+ W+ Sbjct: 100 LQEDLGIPPARHGFLESWARQGVLLLNSVLTVERGRAASHQ-GRGWE 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,485,143 Number of Sequences: 219361 Number of extensions: 1730473 Number of successful extensions: 3860 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3854 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
