ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41e23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099F01, full insert sequence Length = 2191 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Minus Query: 342 gagcaggtgttccttcaagggcctctttacccgtgatgccgtctttgagctccttgaagt 401 |||||||||||||||| || ||||||||||| || ||||| |||||||||| ||||| | Sbjct: 1669 gagcaggtgttccttctagtgcctctttacctgttatgccagctttgagctctttgaaat 1610 Query: 402 acacttcgtagtccttctcaggaggtgggtttgaaggatcgatcacaaacggttcactaa 461 |||| || ||||| ||||| ||||| || ||||||||||| | ||| || |||||||| | Sbjct: 1609 acacatcatagtctttctctggaggaggatttgaaggatcaaccacgaaaggttcactga 1550 Query: 462 atggaacggtactcttgacctcaaa 486 ||||||| || |||||||||||||| Sbjct: 1549 atggaacagtgctcttgacctcaaa 1525
>dbj|AK068001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128H21, full insert sequence Length = 2281 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Minus Query: 342 gagcaggtgttccttcaagggcctctttacccgtgatgccgtctttgagctccttgaagt 401 |||||||||||||||| || ||||||||||| || ||||| |||||||||| ||||| | Sbjct: 1864 gagcaggtgttccttctagtgcctctttacctgttatgccagctttgagctctttgaaat 1805 Query: 402 acacttcgtagtccttctcaggaggtgggtttgaaggatcgatcacaaacggttcactaa 461 |||| || ||||| ||||| ||||| || ||||||||||| | ||| || |||||||| | Sbjct: 1804 acacatcatagtctttctctggaggaggatttgaaggatcaaccacgaaaggttcactga 1745 Query: 462 atggaacggtactcttgacctcaaa 486 ||||||| || |||||||||||||| Sbjct: 1744 atggaacagtgctcttgacctcaaa 1720
>dbj|AK059065.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G09, full insert sequence Length = 1565 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Minus Query: 342 gagcaggtgttccttcaagggcctctttacccgtgatgccgtctttgagctccttgaagt 401 |||||||||||||||| || ||||||||||| || ||||| |||||||||| ||||| | Sbjct: 1056 gagcaggtgttccttctagtgcctctttacctgttatgccagctttgagctctttgaaat 997 Query: 402 acacttcgtagtccttctcaggaggtgggtttgaaggatcgatcacaaacggttcactaa 461 |||| || ||||| ||||| ||||| || ||||||||||| | ||| || |||||||| | Sbjct: 996 acacatcatagtctttctctggaggaggatttgaaggatcaaccacgaaaggttcactga 937 Query: 462 atggaacggtactcttgacctcaaa 486 ||||||| || |||||||||||||| Sbjct: 936 atggaacagtgctcttgacctcaaa 912
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 342 gagcaggtgttccttcaagggcctctttacccgtgatgccgtctttgagctccttgaagt 401 |||||||||||||||| || ||||||||||| || ||||| |||||||||| ||||| | Sbjct: 7625754 gagcaggtgttccttctagtgcctctttacctgttatgccagctttgagctctttgaaat 7625695 Query: 402 acacttcgtagtccttctcaggaggtgggtttgaaggatcgatcacaaacggttcactaa 461 |||| || ||||| ||||| ||||| || ||||||||||| | ||| || |||||||| | Sbjct: 7625694 acacatcatagtctttctctggaggaggatttgaaggatcaaccacgaaaggttcactga 7625635 Query: 462 atggaacggtactcttgacct 482 ||||||| || |||||||||| Sbjct: 7625634 atggaacagtgctcttgacct 7625614
>dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_E05 Length = 101333 Score = 113 bits (57), Expect = 6e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 342 gagcaggtgttccttcaagggcctctttacccgtgatgccgtctttgagctccttgaagt 401 |||||||||||||||| || ||||||||||| || ||||| |||||||||| ||||| | Sbjct: 42514 gagcaggtgttccttctagtgcctctttacctgttatgccagctttgagctctttgaaat 42455 Query: 402 acacttcgtagtccttctcaggaggtgggtttgaaggatcgatcacaaacggttcactaa 461 |||| || ||||| ||||| ||||| || ||||||||||| | ||| || |||||||| | Sbjct: 42454 acacatcatagtctttctctggaggaggatttgaaggatcaaccacgaaaggttcactga 42395 Query: 462 atggaacggtactcttgacct 482 ||||||| || |||||||||| Sbjct: 42394 atggaacagtgctcttgacct 42374
>gb|AC164633.2| Mus musculus chromosome 15, clone RP24-374C19, complete sequence Length = 157653 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 129 gttttacatttcttttgtatat 150 |||||||||||||||||||||| Sbjct: 50557 gttttacatttcttttgtatat 50578
>gb|AC118590.11| Mus musculus chromosome 15, clone RP24-506N7, complete sequence Length = 155519 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 129 gttttacatttcttttgtatat 150 |||||||||||||||||||||| Sbjct: 28574 gttttacatttcttttgtatat 28553
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 gggtttgaaggatcgatcaca 448 ||||||||||||||||||||| Sbjct: 4618003 gggtttgaaggatcgatcaca 4617983
>gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, complete sequence Length = 222905 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 ctgaagttttacatttctttt 144 ||||||||||||||||||||| Sbjct: 75694 ctgaagttttacatttctttt 75674
>emb|AL034411.6|HS808P6 Human DNA sequence from clone RP4-808P6 on chromosome Xq24 Contains the SLC6A14 gene for solute carrier family 6 (neurotransmitter transporter) member 14, complete sequence Length = 99271 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 ttttacatttcttttgtatat 150 ||||||||||||||||||||| Sbjct: 65792 ttttacatttcttttgtatat 65772
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 gcatcagaaagctgctctatg 95 ||||||||||||||||||||| Sbjct: 888052 gcatcagaaagctgctctatg 888032
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 gggtttgaaggatcgatcaca 448 ||||||||||||||||||||| Sbjct: 4618118 gggtttgaaggatcgatcaca 4618098
>emb|CT025710.9| Mouse DNA sequence from clone RP23-261P14 on chromosome 12, complete sequence Length = 225685 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 ctgaagttttacatttctttt 144 ||||||||||||||||||||| Sbjct: 184782 ctgaagttttacatttctttt 184762
>emb|BX000707.9| Zebrafish DNA sequence from clone DKEY-187I8, complete sequence Length = 194542 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 159 taaagcataatggaaactcaggaaa 183 |||||||||||| |||||||||||| Sbjct: 136482 taaagcataatgcaaactcaggaaa 136506
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 gggtttgaaggatcgatcaca 448 ||||||||||||||||||||| Sbjct: 58958 gggtttgaaggatcgatcaca 58938
>gb|AC147069.2| Pan troglodytes BAC clone RP43-165H20 from 7, complete sequence Length = 193047 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aagttttacatttcttttgt 146 |||||||||||||||||||| Sbjct: 34535 aagttttacatttcttttgt 34516
>gb|AC142345.1| Pan troglodytes BAC clone RP43-1K4 from Y, complete sequence Length = 213921 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aagttttacatttcttttgt 146 |||||||||||||||||||| Sbjct: 118657 aagttttacatttcttttgt 118676
>gb|AC122841.4| Mus musculus BAC clone RP23-194E5 from 3, complete sequence Length = 200088 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 agcaggtgttccttcaaggg 362 |||||||||||||||||||| Sbjct: 171743 agcaggtgttccttcaaggg 171762
>gb|AC127598.3| Mus musculus BAC clone RP23-84E16 from 7, complete sequence Length = 186752 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tgaagttttacatttctttt 144 |||||||||||||||||||| Sbjct: 106977 tgaagttttacatttctttt 106996
>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence Length = 234053 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttttacatttcttttgtata 149 |||||||||||||||||||| Sbjct: 134259 ttttacatttcttttgtata 134240
>emb|AL356128.27| Human DNA sequence from clone RP11-366I13 on chromosome 10 Contains the IDE gene for insulin-degrading enzyme, the 5' end of the KIF11 gene for kinesin family member 11, a ribosomal protein L11 (RPL11) pseudogene and two CpG islands, complete sequence Length = 191935 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aagttttacatttcttttgt 146 |||||||||||||||||||| Sbjct: 107461 aagttttacatttcttttgt 107442
>gb|AC125790.2| Homo sapiens chromosome 5 clone CTD-2263N8, complete sequence Length = 106412 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 gaaagctgctctatgaaaat 100 |||||||||||||||||||| Sbjct: 94289 gaaagctgctctatgaaaat 94308
>emb|AL121900.26|HSBA379J5 Human DNA sequence from clone RP11-379J5 on chromosome 20 Contains the 3' end of the SEC23B gene for Sec23 (S. cerevisiae) homolog B, two novel genes, the 5' end of the HARS2 gene for histidyl-tRNA synthetase 2, a pseudogene similar to part of homeobox proteins and two CpG islands, complete sequence Length = 149933 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cttcacattaccaaaatggt 47 |||||||||||||||||||| Sbjct: 115154 cttcacattaccaaaatggt 115173
>gb|AC091047.10| Homo sapiens chromosome 8, clone RP11-102F4, complete sequence Length = 165127 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aagttttacatttcttttgt 146 |||||||||||||||||||| Sbjct: 27809 aagttttacatttcttttgt 27790
>gb|AC125787.2| Homo sapiens chromosome 5 clone CTD-2137I20, complete sequence Length = 117180 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 gaaagctgctctatgaaaat 100 |||||||||||||||||||| Sbjct: 67637 gaaagctgctctatgaaaat 67618
>emb|CR749777.9| Zebrafish DNA sequence from clone CH211-270A13 in linkage group 20, complete sequence Length = 31993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 tttcttttgtatatactgaa 156 |||||||||||||||||||| Sbjct: 30404 tttcttttgtatatactgaa 30385
>emb|CR751234.13| Zebrafish DNA sequence from clone DKEY-164M14 in linkage group 20 Contains the gene for a novel protein similar to vertebrate bromodomain containing 1 (BRD1), the gene for a novel protein similar to vertebrate asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) (ALG12), the gene for a novel protein similar to vertebrate solute carrier family 6 (neurotransmitter transporter, GABA), member 1 (SLC6A1), the gene for a novel protein similar to vertebrate zinc finger, BED domain containing 4 (ZBED4), the gene for a novel protein similar to vertebrate cysteine-rich with EGF-like domains 1 (CRELD1) (zgc:66383) and three CpG islands, complete sequence Length = 218596 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 tttcttttgtatatactgaa 156 |||||||||||||||||||| Sbjct: 411 tttcttttgtatatactgaa 392
>dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, complete sequences Length = 161601 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aagttttacatttcttttgt 146 |||||||||||||||||||| Sbjct: 133203 aagttttacatttcttttgt 133184
>gb|AC024680.10| Homo sapiens chromosome 8, clone RP11-347D13, complete sequence Length = 81715 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aagttttacatttcttttgt 146 |||||||||||||||||||| Sbjct: 45280 aagttttacatttcttttgt 45261
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aagttttacatttcttttgt 146 |||||||||||||||||||| Sbjct: 15374681 aagttttacatttcttttgt 15374700
>emb|BX649523.10| Zebrafish DNA sequence from clone DKEY-69P10 in linkage group 17, complete sequence Length = 55445 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 gaaggatcgatcacaaacgg 453 |||||||||||||||||||| Sbjct: 15812 gaaggatcgatcacaaacgg 15831
>ref|NM_143480.2| Drosophila melanogaster CG18041-RA (CG18041), mRNA Length = 1695 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 catttcttttgtatatactg 154 |||||||||||||||||||| Sbjct: 1346 catttcttttgtatatactg 1327
>gb|AC093925.5| Genomic sequence for Mus musculus, clone RP23-304H5, complete sequence Length = 227242 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 gttttacatttcttttgtatatac 152 |||||||||||||||| ||||||| Sbjct: 29349 gttttacatttcttttctatatac 29372
>ref|XM_703692.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 3 (LOC565633), mRNA Length = 2230 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gaaggatcgatcacaaacgg 453 |||||||||||||||||||| Sbjct: 121 gaaggatcgatcacaaacgg 102
>ref|XM_703691.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 2 (LOC565633), mRNA Length = 2257 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gaaggatcgatcacaaacgg 453 |||||||||||||||||||| Sbjct: 121 gaaggatcgatcacaaacgg 102
>ref|XM_682429.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 1 (LOC565633), mRNA Length = 2239 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gaaggatcgatcacaaacgg 453 |||||||||||||||||||| Sbjct: 121 gaaggatcgatcacaaacgg 102
>ref|XM_703357.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 3 (LOC563049), mRNA Length = 2230 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gaaggatcgatcacaaacgg 453 |||||||||||||||||||| Sbjct: 121 gaaggatcgatcacaaacgg 102
>ref|XM_703356.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 2 (LOC563049), mRNA Length = 2257 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gaaggatcgatcacaaacgg 453 |||||||||||||||||||| Sbjct: 121 gaaggatcgatcacaaacgg 102
>ref|XM_681461.1| PREDICTED: Danio rerio similar to nephrocystin, transcript variant 1 (LOC563049), mRNA Length = 2245 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gaaggatcgatcacaaacgg 453 |||||||||||||||||||| Sbjct: 121 gaaggatcgatcacaaacgg 102
>gb|AY061156.1| Drosophila melanogaster LD12439 full length cDNA Length = 1711 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 catttcttttgtatatactg 154 |||||||||||||||||||| Sbjct: 1348 catttcttttgtatatactg 1329
>gb|AC005859.1| Homo sapiens X BAC GSHB-324M7 (Genome Systems Human BAC Library) complete sequence Length = 202879 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ttttacatttcttttgtatatact 153 |||||||||||| ||||||||||| Sbjct: 122677 ttttacatttctgttgtatatact 122700
>emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in linkage group 17, complete sequence Length = 193078 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 gaaggatcgatcacaaacgg 453 |||||||||||||||||||| Sbjct: 39373 gaaggatcgatcacaaacgg 39392
>gb|AC157510.1| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875J15, complete sequence Length = 41401 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 tcagactagagcaggtgttc 353 |||||||||||||||||||| Sbjct: 6494 tcagactagagcaggtgttc 6475
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gcatcagaaagctgctctat 94 |||||||||||||||||||| Sbjct: 312214 gcatcagaaagctgctctat 312195
>gb|AC140238.3| Mus musculus BAC clone RP24-279O7 from 3, complete sequence Length = 174633 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 agcaggtgttccttcaaggg 362 |||||||||||||||||||| Sbjct: 123678 agcaggtgttccttcaaggg 123659
>emb|AL592243.14| Mouse DNA sequence from clone RP23-101B24 on chromosome 1, complete sequence Length = 193810 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gacaaattaccaatactaca 74 |||||||||||||||||||| Sbjct: 50948 gacaaattaccaatactaca 50929 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,032,494 Number of Sequences: 3902068 Number of extensions: 4032494 Number of successful extensions: 87875 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87640 Number of HSP's gapped (non-prelim): 235 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
