ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41e17 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 70.1 bits (170), Expect(2) = 3e-16 Identities = 35/69 (50%), Positives = 39/69 (56%), Gaps = 7/69 (10%) Frame = -1 Query: 393 QYNFDKNIRCGDPVLGGK-------SCVDPSKSVSWDGVHLTEAAYKFIFDQIVDGALSD 235 +YNF CGD V SC PS V+WDG H TEAA ++ FDQI GA SD Sbjct: 311 KYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAFSD 370 Query: 234 PPVPLRRAC 208 PPVPL AC Sbjct: 371 PPVPLNMAC 379 Score = 33.9 bits (76), Expect(2) = 3e-16 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 490 VDLYAAMYKLMSEAKXFGFGDPLRVCCG 407 VD+Y+ Y L SE + GF PL CCG Sbjct: 280 VDIYSVKYSLFSEPEKHGFEFPLITCCG 307
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 57.4 bits (137), Expect(2) = 3e-10 Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 7/56 (12%) Frame = -1 Query: 393 QYNFDKNIRCG-------DPVLGGKSCVDPSKSVSWDGVHLTEAAYKFIFDQIVDG 247 +YN++K I CG V GK C +P K+V WDGVH T+AA KFIFD+I G Sbjct: 309 KYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIAPG 364 Score = 26.2 bits (56), Expect(2) = 3e-10 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -3 Query: 490 VDLYAAMYKLMSEAKXFGFGDPLRVCCG 407 VD+Y+ ++L A+ GF L CCG Sbjct: 278 VDVYSLKHELFVHAQGHGFKGSLVSCCG 305
>CI066_HUMAN (Q5T8R8) Protein C9orf66| Length = 295 Score = 34.3 bits (77), Expect = 0.19 Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Frame = -3 Query: 406 VRRRPIQLRQEHPVWRSGPGGEVVRGPVQE-RELGWGALDRSGLQVYLRPDRGRRSLRPS 230 VR R R HP WR+G GG RGP E WG R G LRP Sbjct: 198 VRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGR---------RRALPGAADLRPK 248 Query: 229 GAFA 218 GA A Sbjct: 249 GARA 252
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 30.4 bits (67), Expect(2) = 0.23 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 342 KSCVDPSKSVSWDGVHLTEAAYKFI 268 K C + S + WDGVH T+ AYK I Sbjct: 496 KICPNTSSYLFWDGVHPTQRAYKTI 520 Score = 22.3 bits (46), Expect(2) = 0.23 Identities = 6/27 (22%), Positives = 15/27 (55%) Frame = -3 Query: 490 VDLYAAMYKLMSEAKXFGFGDPLRVCC 410 +D+Y + +++ +GF + + CC Sbjct: 453 MDIYTIISQMLETPAAYGFEETKKPCC 479
>GLP1_CAEEL (P13508) Protein glp-1 precursor| Length = 1295 Score = 31.6 bits (70), Expect = 1.2 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 30/134 (22%) Frame = +2 Query: 155 SYIRSLINEHHVHCPLPWQARRKGTG--------------GSERAPSTIWSKINL*AASV 292 +++R + NE H + + Q + G G GS + P++ S + Sbjct: 1158 AFLRQVANERHRNDIMRQQIVKSGHGAKSGRQTVKNIKRAGSRKTPTSAASSRE--TNHL 1215 Query: 293 KCTPSQLTLLDGSTHDFPPRTGSPHRMFLSKLY-------------W---PPPYPAAHAQ 424 PS + S H +P T +P+RM S Y W PPPY + + Sbjct: 1216 TPPPSDGSFSSPSPHYYPTTTSTPNRMETSPEYMFNHEMAPPVNAMWYTTPPPYQDPNYR 1275 Query: 425 RIPKTEXFGFAHQL 466 +P F A Q+ Sbjct: 1276 HVPPNTAFQNAEQM 1289
>MA1B1_HUMAN (Q9UKM7) Endoplasmic reticulum mannosyl-oligosaccharide| 1,2-alpha-mannosidase (EC 3.2.1.113) (ER alpha-1,2-mannosidase) (Mannosidase alpha class 1B member 1) (Man9GlcNAc2-specific-processing alpha-mannosidase) Length = 699 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = +2 Query: 296 CTPSQLTLLDGSTHDF--PPRTGSPHRMFLSKLYWPPPYPAAHAQRIPKTEXFG 451 C + L S DF PP G+P + + + +PPP P H I T FG Sbjct: 4 CEGRRSGALGSSQSDFLTPPVGGAPWAVATTVVMYPPPPPPPHRDFISVTLSFG 57
>NOC2L_HUMAN (Q9Y3T9) Nucleolar complex protein 2 homolog (NOC2 protein homolog)| Length = 749 Score = 29.6 bits (65), Expect = 4.6 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Frame = +2 Query: 146 RKKSYIRSLINEHHVHCPLPWQARRKGTGGSERAPSTIWSKINL*AASVKCTPS------ 307 RKK +S+ N +VHC W G SE ++ + +K P+ Sbjct: 395 RKKETYQSVYNWQYVHCLFLWCRVLSTAGPSEALQPLVYPLAQVIIGCIKLIPTARFYPL 454 Query: 308 ------QLTLLDGSTHDFPP 349 LTLL GS+ F P Sbjct: 455 RMHCIRALTLLSGSSGAFIP 474
>TRUB_PROMM (P59881) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 320 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 304 WGALDRSGLQVYLRPDRGRRSLRPSGAFASGLPGQRA 194 W L+ + ++ YL P RGR RP A + G+RA Sbjct: 93 WPELNTAEIEAYLEPFRGRIQQRPPQVSAVHVQGERA 129
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 332 THDFPPRTGSPHRMFLSKLYWPPPYPAAHAQRIP 433 T DF P GS R+ + WP P P +H+ R P Sbjct: 501 TSDFNPNAGSDQRVVNGGVPWPSPCP-SHSSRPP 533
>RIP_RAT (Q4G2Y1) RPA-interacting protein| Length = 219 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +2 Query: 137 TDVRKKSYIRSLINEHHVHCP-LPWQARRKGTGGSERAPSTIWS 265 T+ + ++ + +NEH HCP +P TGG+E PS + S Sbjct: 168 TEQKLRACLEGNVNEHSAHCPHIP---EFSVTGGTEEKPSLLMS 208
>REP1_YEAST (P03871) Trans-acting factor B (REP1) (Protein Baker)| Length = 373 Score = 29.3 bits (64), Expect = 6.0 Identities = 20/49 (40%), Positives = 24/49 (48%) Frame = -3 Query: 256 RGRRSLRPSGAFASGLPGQRAMNMMFIN*TADVGFFSDVRTPNKICNEY 110 RG+ RP G F R M F+N T FFS +R NKI +EY Sbjct: 123 RGKGIRRPKGVFF------RYMESPFVN-TKVTAFFSYLRDYNKIASEY 164
>T240L_MOUSE (Q6JPI3) Thyroid hormone receptor-associated protein 2 (Thyroid| hormone receptor-associated protein complex 240 kDa component-like) Length = 2207 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Frame = +2 Query: 143 VRKKSYIRSLINEHHVHCPLPWQARRK----GTGGSERAPSTI 259 ++KK R+ N HV PL WQ K GT GSE +P + Sbjct: 1337 IQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGTYGSEESPEPL 1379
>T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein 2 (Thyroid| hormone receptor-associated protein complex 240 kDa component-like) Length = 2210 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Frame = +2 Query: 143 VRKKSYIRSLINEHHVHCPLPWQARRK----GTGGSERAPSTI 259 ++KK R+ N HV PL WQ K GT GSE +P + Sbjct: 1338 IQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGTYGSEESPEPL 1380
>NFAC2_MOUSE (Q60591) Nuclear factor of activated T-cells, cytoplasmic 2 (T cell| transcription factor NFAT1) (NFAT pre-existing subunit) (NF-ATp) Length = 1064 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = +3 Query: 273 TCKPLRSSAPHPSSRSWTGPRTTSPPGPDRHTXXXXXXXXXXXXTPQHTRRGSPKP 440 +C S P P+SRS +SP RH+ +PQ +R SP+P Sbjct: 232 SCLGRHSPVPRPASRS------SSPGAKRRHSCAEALVAPLPAASPQRSRSPSPQP 281
>NFAC2_HUMAN (Q13469) Nuclear factor of activated T-cells, cytoplasmic 2 (T cell| transcription factor NFAT1) (NFAT pre-existing subunit) (NF-ATp) Length = 925 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = +3 Query: 273 TCKPLRSSAPHPSSRSWTGPRTTSPPGPDRHTXXXXXXXXXXXXTPQHTRRGSPKP 440 +C S P P+SRS +SP RH+ +PQ +R SP+P Sbjct: 230 SCLGRHSPVPRPASRS------SSPGAKRRHSCAEALVALPPGASPQRSRSPSPQP 279
>DNE23_AGRT5 (Q8U642) Error-prone DNA polymerase 3 (EC 2.7.7.7)| Length = 1087 Score = 28.9 bits (63), Expect = 7.8 Identities = 29/99 (29%), Positives = 32/99 (32%) Frame = -3 Query: 406 VRRRPIQLRQEHPVWRSGPGGEVVRGPVQERELGWGALDRSGLQVYLRPDRGRRSLRPSG 227 VR PIQ HP R G E V P E E G L V L + R Sbjct: 601 VRPGPIQGDMVHPYLRRREGKEAVEYPTPELEAVLG----KTLGVPLFQESAMRVAMVCA 656 Query: 226 AFASGLPGQRAMNMMFIN*TADVGFFSDVRTPNKICNEY 110 F G Q +M T V F D + N Y Sbjct: 657 GFTGGEADQLRKSMATFKFTGGVSQFKDKLVSGMVRNGY 695
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Frame = +3 Query: 294 SAPHPSSRSWTGPRTTSPPGPDRHT--XXXXXXXXXXXXTPQHTRRGSPKP 440 S+PHPSSR+ T SPP P T TP TR + P Sbjct: 4009 SSPHPSSRT-----TESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLP 4054 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Frame = +3 Query: 294 SAPHPSSRSWTGPRTTSPPGPDRHT--XXXXXXXXXXXXTPQHTRRGSPKP 440 S+PHPSSR+ T SPP P T TP TR + P Sbjct: 2782 SSPHPSSRT-----TESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLP 2827 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Frame = +3 Query: 294 SAPHPSSRSWTGPRTTSPPGPDRHT--XXXXXXXXXXXXTPQHTRRGSPKP 440 S+PHPSSR+ T SPP P T TP TR + P Sbjct: 2253 SSPHPSSRT-----TESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLP 2298
>STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.11.1) (Protein| RP1) (Protein G11) Length = 368 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 Query: 262 PDRGRRSLRPSGAFASGLPGQ 200 P RGRR RP G A G PG+ Sbjct: 59 PIRGRRGARPGGGDAGGTPGE 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,066,524 Number of Sequences: 219361 Number of extensions: 1672540 Number of successful extensions: 4699 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4503 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4697 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
