ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41e17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, com... 76 1e-10
2ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA 70 7e-09
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
4dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
5dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
6ref|XM_478921.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
7ref|XM_478922.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
8dbj|AK099293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
9dbj|AK073754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
10dbj|AK060131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
11emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chro... 46 0.11
12gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, comp... 46 0.11
13gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reducta... 42 1.7
14gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequ... 42 1.7
15emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in... 42 1.7
16gb|AC125051.4| Mus musculus BAC clone RP23-372M8 from chromosome... 40 6.7
17gb|AC074369.6| Homo sapiens BAC clone RP11-467K21 from 7, comple... 40 6.7
18emb|X64518.1|NTCHN14G N.tabacum chitinase gene 50 for class I ch... 40 6.7 
>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds
          Length = 1471

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                        
Query: 233  gggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagccgcttcggtc 292
            ||||| ||||| |||||| | |||||||||||||| |  |||||||  || || ||||| 
Sbjct: 1227 gggtccgagagcgcgccggcgacgatctggtcgaacacgaacttgttggcagcctcggtg 1168

                                                              
Query: 293  aagtgcaccccatcccagctcacgctcttggacgggtccacgcacgactt 342
            |||||||| || ||||||||||| |||||||| |||| | ||||||||||
Sbjct: 1167 aagtgcacgccgtcccagctcaccctcttggaggggttctcgcacgactt 1118
to top
>ref|XM_478920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                        
Query: 224  ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagcc 283
            |||||||| |||||||||||   |||| | |||||| | |||||||  ||| |||  |||
Sbjct: 1240 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1181

                                                                       
Query: 284  gcttcggtcaagtgcaccccatcccagctcacgctcttggacgggtccacgcacgactt 342
            || || || ||||||||||| ||||||||||||||| | ||||||||  ||||||||||
Sbjct: 1180 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgactt 1122



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                       
Query: 360  cgccacaccggatgttcttgtcgaagttgtattggccgccgccgtaccccgcagcacac 418
            |||| |||||||||| | ||||||||||||| | |||||||||||| ||||||||||||
Sbjct: 1083 cgccgcaccggatgtccctgtcgaagttgtactcgccgccgccgta-cccgcagcacac 1026
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                            
Query: 224      ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagcc 283
                |||||||| |||||||||||   |||| | |||||| | |||||||  ||| |||  |||
Sbjct: 23760842 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 23760901

                                                                           
Query: 284      gcttcggtcaagtgcaccccatcccagctcacgctcttggacgggtccacgcacgactt 342
                || || || ||||||||||| ||||||||||||||| | ||||||||  ||||||||||
Sbjct: 23760902 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgactt 23760960



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                           
Query: 360      cgccacaccggatgttcttgtcgaagttgtattggccgccgccgtaccccgcagcacac 418
                |||| |||||||||| | ||||||||||||| | |||||||||||| ||||||||||||
Sbjct: 23760999 cgccgcaccggatgtccctgtcgaagttgtactcgccgccgccgta-cccgcagcacac 23761056



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                            
Query: 223      aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagc 282
                ||||||||| |||||||||||   |||| |  ||||||||||||| |  |||||||  ||
Sbjct: 23767024 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 23767083

                                                 
Query: 283      cgcttcggtcaagtgcaccccatcccagctcac 315
                ||| ||||| |||||||| || |||||||||||
Sbjct: 23767084 cgcctcggtgaagtgcacgccgtcccagctcac 23767116



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 447      ttggcttcgctcatcagcttgtacatggcggcgtacaggtcgacgt 492
                ||||| ||||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 23767350 ttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgt 23767395
to top
>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1113_E01
          Length = 73706

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                         
Query: 224   ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagcc 283
             |||||||| |||||||||||   |||| | |||||| | |||||||  ||| |||  |||
Sbjct: 15772 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 15831

                                                                        
Query: 284   gcttcggtcaagtgcaccccatcccagctcacgctcttggacgggtccacgcacgactt 342
             || || || ||||||||||| ||||||||||||||| | ||||||||  ||||||||||
Sbjct: 15832 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgactt 15890



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                        
Query: 360   cgccacaccggatgttcttgtcgaagttgtattggccgccgccgtaccccgcagcacac 418
             |||| |||||||||| | ||||||||||||| | |||||||||||| ||||||||||||
Sbjct: 15929 cgccgcaccggatgtccctgtcgaagttgtactcgccgccgccgta-cccgcagcacac 15986



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                         
Query: 223   aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagc 282
             ||||||||| |||||||||||   |||| |  ||||||||||||| |  |||||||  ||
Sbjct: 21954 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 22013

                                              
Query: 283   cgcttcggtcaagtgcaccccatcccagctcac 315
             ||| ||||| |||||||| || |||||||||||
Sbjct: 22014 cgcctcggtgaagtgcacgccgtcccagctcac 22046



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 447   ttggcttcgctcatcagcttgtacatggcggcgtacaggtcgacgt 492
             ||||| ||||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 22280 ttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgt 22325
to top
>dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full
            insert sequence
          Length = 1439

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                        
Query: 224  ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagcc 283
            |||||||| |||||||||||   |||| | |||||| | |||||||  ||| |||  |||
Sbjct: 1239 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1180

                                                                       
Query: 284  gcttcggtcaagtgcaccccatcccagctcacgctcttggacgggtccacgcacgactt 342
            || || || ||||||||||| ||||||||||||||| | ||||||||  ||||||||||
Sbjct: 1179 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgactt 1121



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                       
Query: 360  cgccacaccggatgttcttgtcgaagttgtattggccgccgccgtaccccgcagcacac 418
            |||| |||||||||| | ||||||||||||| | |||||||||||| ||||||||||||
Sbjct: 1082 cgccgcaccggatgtccctgtcgaagttgtactcgccgccgccgta-cccgcagcacac 1025
to top
>ref|XM_478921.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1757

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                        
Query: 223  aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagc 282
            ||||||||| |||||||||||   |||| |  ||||||||||||| |  |||||||  ||
Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488

                                             
Query: 283  cgcttcggtcaagtgcaccccatcccagctcac 315
            ||| ||||| |||||||| || |||||||||||
Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcac 1455



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 447  ttggcttcgctcatcagcttgtacatggcggcgtacaggtcgacgt 492
            ||||| ||||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 1303 ttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgt 1258
to top
>ref|XM_478922.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1115

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                       
Query: 223 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagc 282
           ||||||||| |||||||||||   |||| |  ||||||||||||| |  |||||||  ||
Sbjct: 896 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 837

                                            
Query: 283 cgcttcggtcaagtgcaccccatcccagctcac 315
           ||| ||||| |||||||| || |||||||||||
Sbjct: 836 cgcctcggtgaagtgcacgccgtcccagctcac 804



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 447 ttggcttcgctcatcagcttgtacatggcggcgtacaggtcgacgt 492
           ||||| ||||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 652 ttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgt 607
to top
>dbj|AK099293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135D02, full
           insert sequence
          Length = 1126

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                       
Query: 223 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagc 282
           ||||||||| |||||||||||   |||| |  ||||||||||||| |  |||||||  ||
Sbjct: 916 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 857

                                            
Query: 283 cgcttcggtcaagtgcaccccatcccagctcac 315
           ||| ||||| |||||||| || |||||||||||
Sbjct: 856 cgcctcggtgaagtgcacgccgtcccagctcac 824



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 447 ttggcttcgctcatcagcttgtacatggcggcgtacaggtcgacgt 492
           ||||| ||||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 672 ttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgt 627
to top
>dbj|AK073754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067M09, full
            insert sequence
          Length = 1757

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                        
Query: 223  aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagc 282
            ||||||||| |||||||||||   |||| |  ||||||||||||| |  |||||||  ||
Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488

                                             
Query: 283  cgcttcggtcaagtgcaccccatcccagctcac 315
            ||| ||||| |||||||| || |||||||||||
Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcac 1455



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 447  ttggcttcgctcatcagcttgtacatggcggcgtacaggtcgacgt 492
            ||||| ||||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 1303 ttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgt 1258
to top
>dbj|AK060131.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B10, full
           insert sequence
          Length = 1117

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                       
Query: 223 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagataaacttgtaagc 282
           ||||||||| |||||||||||   |||| |  ||||||||||||| |  |||||||  ||
Sbjct: 898 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 839

                                            
Query: 283 cgcttcggtcaagtgcaccccatcccagctcac 315
           ||| ||||| |||||||| || |||||||||||
Sbjct: 838 cgcctcggtgaagtgcacgccgtcccagctcac 806



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 447 ttggcttcgctcatcagcttgtacatggcggcgtacaggtcgacgt 492
           ||||| ||||| |||||||||||| |||||| ||| | ||||||||
Sbjct: 654 ttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgt 609
to top
>emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chromosome 11p13-14.2
             Contains a pseudogene similar to ribosomal protein L7a,
             STSs and GSSs, complete sequence
          Length = 111135

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 49    catacatacatagggaggtacatttct 75
             |||||||||||||||||||| ||||||
Sbjct: 43843 catacatacatagggaggtaaatttct 43869
to top
>gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, complete sequence
          Length = 148372

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 49    catacatacatagggaggtacatttct 75
             |||||||||||||||||||| ||||||
Sbjct: 71562 catacatacatagggaggtaaatttct 71588
to top
>gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal,
            mRNA (cDNA clone IMAGE:5307739), partial cds
          Length = 1322

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 190  tcattgccctttgccctggca 210
            |||||||||||||||||||||
Sbjct: 1184 tcattgccctttgccctggca 1164
to top
>gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequence
          Length = 53218

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   tcattgccctttgccctggca 210
             |||||||||||||||||||||
Sbjct: 16967 tcattgccctttgccctggca 16987
to top
>emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in linkage group 20,
             complete sequence
          Length = 166153

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 170   ctaattaatgaacatcatgttcatt 194
             |||||||||||| ||||||||||||
Sbjct: 43107 ctaattaatgaaaatcatgttcatt 43083
to top
>gb|AC125051.4| Mus musculus BAC clone RP23-372M8 from chromosome 17, complete sequence
          Length = 126106

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     aggtacatttcttattcatt 83
              ||||||||||||||||||||
Sbjct: 107571 aggtacatttcttattcatt 107552
to top
>gb|AC074369.6| Homo sapiens BAC clone RP11-467K21 from 7, complete sequence
          Length = 61119

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ttataaatagatactcattg 119
             ||||||||||||||||||||
Sbjct: 20865 ttataaatagatactcattg 20884
to top
>emb|X64518.1|NTCHN14G N.tabacum chitinase gene 50 for class I chitinase C
          Length = 2882

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  ctaattaatgaacatcatgt 189
            ||||||||||||||||||||
Sbjct: 2655 ctaattaatgaacatcatgt 2674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,588,809
Number of Sequences: 3902068
Number of extensions: 3588809
Number of successful extensions: 56115
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56056
Number of HSP's gapped (non-prelim): 52
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top