>YISS_BACSU (P40332) Hypothetical oxidoreductase yisS (EC 1.-.-.-)|
          Length = 342

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 2/184 (1%)
 Frame = -2

Query: 697 NSGGTLVEKCCHFFDLIRLFADANPVRVMASGAIDVNHKDEVYHGKVPDIIDNAYVIIEF 518
           +SGG  ++   H +D+ R    A    V   G I  N   E Y       +D A   IEF
Sbjct: 168 HSGGIFIDCSIHDYDIARYLLGAEITSVSGHGRILNNPFMEQYGD-----VDQALTYIEF 222

Query: 517 DNGCRGMLDLCMFAEGSRNEQEISVVGDTGKGEAFVPESIVRVGKRAGGRDGVVTIKAED 338
           D+G  G +      E SR     S  G   + E    E  + +G        +++ K   
Sbjct: 223 DSGAAGDV------EASRT----SPYGHDIRAEVIGTEGSIFIGTLRHQHVTILSAKGSS 272

Query: 337 ERI--KYQGLHHGSSYLEHLNFLSAIRSQGACCPAISLEDGLLSVAIGVAGQLSIEKGRF 164
             I   +Q   H +  LE  +F   +R+     P ++  D  +++ +G+A   S   G  
Sbjct: 273 FDIIPDFQTRFHEAYCLELQHFAECVRN--GKTPIVTDIDATINLEVGIAATNSFRNGMP 330

Query: 163 VTIE 152
           V ++
Sbjct: 331 VQLD 334

>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 395

 Score = 37.0 bits (84), Expect = 0.059
 Identities = 29/102 (28%), Positives = 40/102 (39%)
 Frame = +1

Query: 388 QPSQCSLEQKLHPFQCHQQQKFPAHFYYLQQTCRDQACHDSHYQIL*SHMHYQLYLVPFH 567
           Q  Q   +Q+ H     QQQ +  H    QQ  + Q  HD H Q    H H+Q     FH
Sbjct: 145 QQQQQQQQQQFHNHHQQQQQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHDHHQ-QQQQFH 203

Query: 568 DKPHPCG*HQ*LQRPLHEQGSHLQTILSNQKSGSTSQPESPH 693
           D  H    HQ  ++  H+     Q    +Q+     Q +  H
Sbjct: 204 DHHHH---HQ--EQQFHDHHQQQQQFHDHQQQQQQQQQQQFH 240

>YRBE_BACSU (O05389) Hypothetical oxidoreductase yrbE (EC 1.-.-.-)|
          Length = 341

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 50/188 (26%), Positives = 71/188 (37%), Gaps = 7/188 (3%)
 Frame = -2

Query: 694 SGGTLVEKCCHFFDLIRLFADANPVRVMASGAIDVNHKDEVYHGKVPDIIDNAYVIIEFD 515
           SGG  ++   H FD+ R    +    V A GA  VN        ++ D ID A + + F+
Sbjct: 168 SGGLFMDMSIHDFDMARYIMGSEVTEVYAKGAALVNPS----FAELGD-IDTAVITLTFE 222

Query: 514 NGCRGMLDLCMFAEGSRNEQEISVVGDTGKGEAFVPESIVRVGKRAGGRDGVVTIKAEDE 335
           NG   ++D    A     +Q + V G  G   A               R   V +   D 
Sbjct: 223 NGAMAVIDNSRQAVYG-YDQRVEVFGTKGSAAA------------DNSRPTTVEVSTADF 269

Query: 334 RIK------YQGLHHGSSYLEHLNFLSAI-RSQGACCPAISLEDGLLSVAIGVAGQLSIE 176
            +K      +   +  S   E L F  AI  +Q   C      DGL +  I  A Q S+ 
Sbjct: 270 VMKDKPHFFFLERYKDSYEEEILRFAEAIGTNQETPCTG---NDGLQAGRIARAAQQSLA 326

Query: 175 KGRFVTIE 152
            G  V+IE
Sbjct: 327 FGMPVSIE 334

>DPO3A_BACHD (Q9K838) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1116

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
 Frame = -2

Query: 442 VGDTGKGEAFVPESIVRVGKRAGGRDGVVTIKAEDERIKYQGLHHGSSYLEHLNFLS--- 272
           V D GK  A  P  I ++ K   GR G+  +KA +E  + + L H S   + +  L+   
Sbjct: 422 VRDVGKALAIPPNVIEKISKEISGRPGMTLVKAYNENERLRQLVHASDEAQKVMKLARKV 481

Query: 271 --AIRSQGACCPAISLEDGLLSVAIGV---AGQLSIEKGRFVTIEEV 146
               R        + + +  L+  I +    G++ + +G   T+E+V
Sbjct: 482 EGLPRHTSTHAAGVVISEQPLTEVIALQHGQGEVPLTQGTMETVEDV 528

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 476  SKHAEIKHATTAIIKFYDHICIINYIWYLSMINLILVVNINSSRGHYTNRVR 631
            S + +++  TT ++ F DH C   Y     + +L  V + N S GHY   VR
Sbjct: 1109 SSNHQLQSETTRLLPFIDHYCWWTYRVPSHIADLFSVPSFNRSEGHYQMAVR 1160

>NFS1_DROME (Q9VKD3) Probable cysteine desulfurase, mitochondrial precursor (EC|
           2.8.1.7)
          Length = 462

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
 Frame = -2

Query: 352 IKAEDERIKYQG-LHHGSSYLEHLNFLSAIR----SQGACCPAISLEDGLLSVAIGVAGQ 188
           I+  D +  Y G L+   +Y+E  + L A++    S G+ C + SLE   +  AIG    
Sbjct: 346 IRNGDAKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDED 405

Query: 187 LSIEK-----GRFVTIEEV 146
           L+        GRF T+EEV
Sbjct: 406 LAHSSIRFGIGRFTTVEEV 424

>DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4083

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = -2

Query: 481  FAEGSRNEQEISVVGDTGKGEAFVPESIVRVGKRAGGRDGVV------TIKAED 338
            F +  + +Q I + GD G G+  V +S++   KR+G ++ +V      T+K ED
Sbjct: 2050 FYDIQKTQQAIILAGDAGTGKTSVWKSVINSMKRSGAKENIVYIIDTKTLKKED 2103

>RPC1_HUMAN (O14802) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)|
            (RPC155) (RPC1)
          Length = 1391

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 13/157 (8%)
 Frame = -2

Query: 658  FDLIRLFADANPVRVMASGAIDVNHKDEVYHGKVPDIIDN-AYVIIEFDNGCRGMLDLCM 482
            F +I   +D NPVR       ++  K + Y GK  D+  N +YV I+      G +D   
Sbjct: 601  FSVILRPSDDNPVRA------NLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654

Query: 481  FAEGSRNEQEISVVGDTGKGEA---------FVPESIVRVGKRAGGRD---GVVTIKAED 338
               GS+N     ++ D G+ EA           P  +   G   G  D   G   +KA+ 
Sbjct: 655  LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714

Query: 337  ERIKYQGLHHGSSYLEHLNFLSAIRSQGACCPAISLE 227
            E +   G      Y+E LN    ++ Q  C    +LE
Sbjct: 715  ELLN-AGYKKCDEYIEALN-TGKLQQQPGCTAEETLE 749

>DHI1_SAISC (Q29608) Corticosteroid 11-beta-dehydrogenase isozyme 1 (EC|
           1.1.1.146) (11-DH) (11-beta-hydroxysteroid dehydrogenase
           1) (11-beta-HSD1)
          Length = 290

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = -2

Query: 442 VGDTGKGEAFVPESIVRVGKRAGGRDGVVTIKAEDERIKY--QGLHHGSSYLEHLNFLSA 269
           +  T +   F  + + + GK  GG D ++     +  + +    +HH    +E +NFLS 
Sbjct: 88  IAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNFFHDDIHHVRKSME-VNFLSY 146

Query: 268 IRSQGACCPAISLEDGLLSVAIGVAGQLS 182
           +    A  P +   +G + +   VAG+++
Sbjct: 147 VVLTVAAMPMLKQSNGSIVIVSSVAGKVA 175

>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 311

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 26/79 (32%), Positives = 34/79 (43%)
 Frame = +1

Query: 409 EQKLHPFQCHQQQKFPAHFYYLQQTCRDQACHDSHYQIL*SHMHYQLYLVPFHDKPHPCG 588
           +Q+   F  H QQK   H ++ QQ  + Q  HD H Q    H H Q     FHD  H   
Sbjct: 145 QQQQQQFHNHHQQKQQFHDHHQQQ--QQQQFHDHHQQKQQFHDHQQ-QQQQFHDHHH--- 198

Query: 589 *HQ*LQRPLHEQGSHLQTI 645
            HQ  Q+  H+     Q +
Sbjct: 199 -HQ-QQQQFHDHQQQQQQL 215



 Score = 31.6 bits (70), Expect = 2.5
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
 Frame = +1

Query: 412 QKLHPFQCHQQQKFPAHFYYLQQTCRDQACHDSHYQIL*SHMHYQLYLVPFHDKP----- 576
           Q+   F  HQQQ+   H ++  Q  + Q  HD   Q    H H+      FHD P     
Sbjct: 178 QQKQQFHDHQQQQQQFHDHHHHQ--QQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQ 235

Query: 577 ---HPCG*HQ*LQRPLHEQGSH 633
              HP    Q   RP  +Q  H
Sbjct: 236 FHDHPQQKQQFHDRPQQQQQFH 257

>Y4HM_RHISN (P55480) Hypothetical protein y4hM precursor|
          Length = 403

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
 Frame = -2

Query: 565 GKVPDIIDNAYVIIEFDNGCRGMLDLCMFAEGSRNEQEISVVGDTG--KGEAFVPESI-- 398
           G V  + D AYV    +NG  G+L +   A G      I V GD G  + +   PE++  
Sbjct: 239 GAVKAMEDTAYVTFRLENGAPGILWVTQAAPGQYCGLRIRVWGDRGGLEWDQEKPEALRY 298

Query: 397 VRVGKR-----AGGRDGVVTIKAEDERIKYQGLHHGSSYLE-------HLNFLSAIRSQG 254
           V +G++      G   G+V    E ER+ +    HG + ++             A R  G
Sbjct: 299 VPLGEQEQIFVRGHGSGIV---PEAERLIHLPRGHGEALVDAWANLYAEAGVAVAARRAG 355

Query: 253 ACCPAISLEDGLLSVAIGVAGQLSIE 176
              P  S+E  L  V  G+ G L I+
Sbjct: 356 YALPKDSVE--LSGVEDGLKGMLFID 379

>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 355

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 409 EQKLHPFQCHQQQKFPAHFYYLQQTCRDQACHDSHY----QIL*SHMHYQLYLVPFHD 570
           +Q+   F  HQQQK   H +  QQ    Q  HD H+    Q    H H+Q     FHD
Sbjct: 184 QQQQQQFHDHQQQKQQFHDHQQQQ----QQFHDHHHQQQQQQFHDHHHHQQQQQQFHD 237



 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +1

Query: 409 EQKLHPFQCH----QQQKFPAHFYYLQQTCRDQACHDSHYQIL*SHMHY-QLYLVPFHDK 573
           +Q+   F  H    QQQ+F  H ++ QQ    Q  HD H Q    H H+ Q     FHD 
Sbjct: 204 QQQQQQFHDHHHQQQQQQFHDHHHHQQQ---QQQFHDHHQQKQQFHDHHQQQQQQQFHDH 260

Query: 574 P 576
           P
Sbjct: 261 P 261

>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific|
            SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase
            complex subunit SET1) (SET-domain-containing protein 1A)
          Length = 1707

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
 Frame = -2

Query: 520  FDNGCRGMLDLCMFAEGSRNEQEISVVGDTGKGEAFVP----ESIVRVGKRAG--GRDGV 359
            F +G RG L L  F    +   EIS   +  +     P    E      K AG  GR G 
Sbjct: 880  FGSGLRGALRLPSFKVKRKEPSEISEASEEKRPRPSTPAEEDEDDPEQEKEAGEPGRPGT 939

Query: 358  VTIKAEDERIKYQGLHHGSSYLE 290
               K ++ER K QG H  S  L+
Sbjct: 940  KPPKRDEERGKTQGKHRKSFALD 962

>ISCS_VIBPA (Q87S28) Cysteine desulfurase (EC 2.8.1.7)|
          Length = 404

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
 Frame = -2

Query: 358 VTIKAEDERIKYQGLHHGSSYLEHLNFLSAIR----SQGACCPAISLEDGLLSVAIGVAG 191
           VT+  + E+   Q L+   +++E  + L +++    S G+ C + SLE   +  A+G+  
Sbjct: 287 VTVNGDLEQRVPQNLNISFAFVEGESLLMSLKDLAVSSGSACTSASLEPSYVLRALGMDD 346

Query: 190 QLS-----IEKGRFVTIEEV 146
           +L+        GRF T EE+
Sbjct: 347 ELAHSSVRFSFGRFTTEEEI 366

>MI2D_RHIME (O68965) Inositol 2-dehydrogenase (EC 1.1.1.18)|
          Length = 330

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 1/181 (0%)
 Frame = -2

Query: 694 SGGTLVEKCCHFFDLIRLFADANPVRVMASGAIDVNHKDEVYHGKVPDIIDNAYVIIEFD 515
           SGG   +   H FD+ R      PV V A+ A+ ++       G   D  D+  VI++  
Sbjct: 164 SGGIFRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKA----IGDAGD-YDSVSVILQTA 218

Query: 514 NGCRGMLDLCMFAEGSRNEQEISVVGDTGKGEAFVPESIVRVGKRAGGRDGVVTIKAEDE 335
           +G + ++     A     +Q I V G  G   A   E+   V       DG       D 
Sbjct: 219 SGKQAIISNSRRATYG-YDQRIEVHGSKG---AVAAENQRPVSIEIATGDGYTRPPLHD- 273

Query: 334 RIKYQGLHHGSSYLEHL-NFLSAIRSQGACCPAISLEDGLLSVAIGVAGQLSIEKGRFVT 158
              +    +  +Y   + +F++AI       P  S  DGL ++A+  A   S+ + R ++
Sbjct: 274 ---FFMTRYTEAYANEIESFIAAIEKGAEIAP--SGNDGLAALALADAAVRSVAEKRQIS 328

Query: 157 I 155
           I
Sbjct: 329 I 329

>A1AG1_MUSCR (P21350) Alpha-1-acid glycoprotein 1 precursor (AGP 1)|
           (Orosomucoid-1) (OMD 1)
          Length = 207

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +2

Query: 233 TDGW---ATCTLRPDGRQEIEVLQVARSVVKPLVLDSFIFGLYRYNSISASCSLSNPHNA 403
           +D W       L PD RQEI+ +Q+    + P +++     L  Y++I   C  ++ H  
Sbjct: 41  SDKWFFIGAAVLNPDYRQEIQKMQMVFFNITPNLIND-TMELREYHTIDDHCVYNSTHLG 99

Query: 404 LWNKSFTLSSVTNNRNFLLISTTFSKH 484
           +  ++ TLS                KH
Sbjct: 100 IQRENGTLSKYVGGVKIFADLIVLRKH 126

>SYV_PORGI (Q7MVD7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 876

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
 Frame = -2

Query: 643 LFADANPVRVMASGAIDVNHKDEVYH------------GKVPDIIDNAYVIIEFDNGC 506
           + A   P  +M   A+ VN  DE Y             G+   II++ YV +EF  GC
Sbjct: 213 IVATTRPETIMGDTAVCVNPNDERYRWLRGKRVIVPTVGRAVPIIEDEYVDMEFGTGC 270

>ZAN_HUMAN (Q9Y493) Zonadhesin precursor|
          Length = 2812

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +3

Query: 363 PSLPPARFPTLTMLSGTKASPFPVSPTTEISCSFLLPSANMQRSSMPRQPLSNSMITYAL 542
           P++P  + PT+     T ++  P +PT E + S   PS  M++ ++P +  + S+    +
Sbjct: 780 PTIPTEK-PTIPTEKPTISTEEPTTPTEETTISTEKPSIPMEKPTLPTEETTTSVEETTI 838

Query: 543 SIISGTFP 566
           S    T P
Sbjct: 839 STEKLTIP 846

>EX5B_CHLMU (Q9PLT8) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1026

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 29/108 (26%), Positives = 43/108 (39%)
 Frame = +3

Query: 366  SLPPARFPTLTMLSGTKASPFPVSPTTEISCSFLLPSANMQRSSMPRQPLSNSMITYALS 545
            SLP      +   S T  S +   P  EIS S L P  +          L+ ++I   L 
Sbjct: 809  SLPILSSQPIYSFSSTTESQYFTEPFQEISSSSLFPGGS----------LTGTLIHKLLE 858

Query: 546  IISGTFP**TSSLWLTSIAPEAITRTGFASANNLIKSKKWQHFSTRVP 689
             +SG F    S   +T  A   +  T      ++I  K +  FST++P
Sbjct: 859  SLSGNFN--ASLEEITHKAQTLLKNTILEGFESIISEKIYTAFSTKLP 904

>ZGPAT_HUMAN (Q8N5A5) Zinc finger CCCH-type with G patch domain protein (Zinc|
           finger CCCH-type domain-containing protein 9)
          Length = 531

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 655 DLIRLFADANPVRVMASGAIDVNHKDEVYHGKVPDIIDNAYVIIEFDN 512
           D +R F D +   + A  A    H+D ++H      +DN Y  ++FD+
Sbjct: 205 DELRPFQDPDLSSLQAGSACLAKHQDGLWHAARITDVDNGYYTVKFDS 252

>NFS1_ARATH (O49543) Cysteine desulfurase, mitochondrial precursor (EC 2.8.1.7)|
          Length = 453

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
 Frame = -2

Query: 367 DGVVTIKAEDERIKYQG-LHHGSSYLEHLNFLSAIR----SQGACCPAISLEDGLLSVAI 203
           DGVV   + D R  Y G L+   +Y+E  + L  ++    S G+ C + SLE   +  A+
Sbjct: 334 DGVVVNGSMDSR--YVGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRAL 391

Query: 202 GVAGQLSIEK-----GRFVTIEEV 146
           GV   ++        GRF T EE+
Sbjct: 392 GVDEDMAHTSIRFGIGRFTTKEEI 415

>K0319_MOUSE (Q5SZV5) Protein KIAA0319 precursor|
          Length = 1081

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 384 FPTLTMLSGTKASPFPVSPTTEISCSFLLPSA 479
           FPT T+L+G    P+P+SPT   +   L  SA
Sbjct: 317 FPTSTVLTGLTPPPWPLSPTASRTVKALAVSA 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,847,942
Number of Sequences: 219361
Number of extensions: 2318931
Number of successful extensions: 7148
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7135
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)