ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190821.1| Oryza sativa (japonica cultivar-group), predic... 224 2e-55
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
3dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
4gb|AY108000.1| Zea mays PCO112270 mRNA sequence 224 2e-55
5dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
6gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome... 74 5e-10
7ref|XM_475271.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
9dbj|AK121670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
10dbj|AK064776.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
11ref|NM_121085.1| Arabidopsis thaliana ATP binding / microtubule ... 44 0.49
12gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.49
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.49
14emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, B... 44 0.49
15gb|AY100691.1| Arabidopsis thaliana geminivirus replication prot... 44 0.49
16gb|AC134887.4| Oryza sativa chromosome 3 BAC OSJNBa0029P07 genom... 44 0.49
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
18dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
21dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
22dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
23dbj|AP005502.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
24gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.49
25emb|AJ001729.1|ATTH65 Arabidopsis thaliana mRNA for Cdc2a associ... 44 0.49
26ref|NM_195789.1| Oryza sativa (japonica cultivar-group) putative... 42 1.9
27gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
28emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 i... 42 1.9
29gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Canc... 42 1.9
30dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
31gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.9
32gb|AC096555.1| Homo sapiens BAC clone RP11-78N15 from 2, complet... 42 1.9
33dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
34dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
35emb|AL807388.8| Mouse DNA sequence from clone RP23-255K14 on chr... 42 1.9
36gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
37gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.6
38emb|BX294177.35| Zebrafish DNA sequence from clone CH211-281O13 ... 40 7.6
39gb|AC105470.17| Rattus norvegicus 10 BAC CH230-192N7 (Children's... 40 7.6
40gb|AY600625.1| Hepatozoon sp. BV2 18S ribosomal RNA gene, partia... 40 7.6
41gb|AC133167.3| Mus musculus BAC clone RP24-211H4 from chromosome... 40 7.6
42gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosom... 40 7.6
43gb|AC098708.3| Mus musculus BAC clone RP23-1I16 from 13, complet... 40 7.6
44gb|U80452.2| Caenorhabditis elegans cosmid C16C8, complete sequence 40 7.6
45emb|AL606517.14| Human DNA sequence from clone RP11-182I10 on ch... 40 7.6
46emb|AL359747.14| Human DNA sequence from clone RP11-107C16 on ch... 40 7.6
47emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.6
48emb|BX571959.8| Zebrafish DNA sequence from clone DKEY-46I6 in l... 40 7.6
49gb|AC109465.3| Homo sapiens chromosome 5 clone RP11-298P6, compl... 40 7.6
50gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.6
51gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8... 40 7.6
52emb|BX247864.10| Zebrafish DNA sequence from clone CH211-225P16,... 40 7.6
53gb|AY252103.1| Hepatozoon sp. Boiga isolate 1 small subunit ribo... 40 7.6
54gb|AF067219.1| Caenorhabditis elegans cosmid R12E2, complete seq... 40 7.6
55dbj|AB125503.1| Testudo horsfieldii DNA, CryIB SINE and its flan... 40 7.6
56emb|BX649594.7| Zebrafish DNA sequence from clone CH211-194N6 in... 40 7.6
57emb|AL672097.5| Zebrafish DNA sequence from clone BUSM1-37O5 in ... 40 7.6
58emb|AL935307.9| Zebrafish DNA sequence from clone DKEY-63P22, co... 40 7.6
59gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, comple... 40 7.6
60gb|AY068866.1| Schmidtea mediterranea clone H.17.6g(T3) unknown ... 40 7.6 
>ref|NM_190821.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1854

 Score =  224 bits (113), Expect = 2e-55
 Identities = 191/217 (88%)
 Strand = Plus / Minus

                                                                        
Query: 334  tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 393
            |||| |||||| ||||||||||| ||||||||||||||||||||||  |||||||| || 
Sbjct: 1808 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 1749

                                                                        
Query: 394  agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 453
            || || |||||| |||| |||||||||||||| || || ||||||||| |||||||||||
Sbjct: 1748 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 1689

                                                                        
Query: 454  tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 513
            |||||  ||||||| | ||| || || |||||||||||||||||||||||||| | ||||
Sbjct: 1688 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 1629

                                                 
Query: 514  ttcctgtacttgacatcccttagcatctcttgttctt 550
            |||||||||||||||||||||||||| ||||| ||||
Sbjct: 1628 ttcctgtacttgacatcccttagcatatcttgatctt 1592
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  224 bits (113), Expect = 2e-55
 Identities = 191/217 (88%)
 Strand = Plus / Plus

                                                                            
Query: 334      tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 393
                |||| |||||| ||||||||||| ||||||||||||||||||||||  |||||||| || 
Sbjct: 37892598 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 37892657

                                                                            
Query: 394      agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 453
                || || |||||| |||| |||||||||||||| || || ||||||||| |||||||||||
Sbjct: 37892658 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 37892717

                                                                            
Query: 454      tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 513
                |||||  ||||||| | ||| || || |||||||||||||||||||||||||| | ||||
Sbjct: 37892718 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 37892777

                                                     
Query: 514      ttcctgtacttgacatcccttagcatctcttgttctt 550
                |||||||||||||||||||||||||| ||||| ||||
Sbjct: 37892778 ttcctgtacttgacatcccttagcatatcttgatctt 37892814



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                           
Query: 32       tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 90
                |||||||||||||| |||||||||||||| ||||||||||  |||| ||||||||||||
Sbjct: 37892243 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 37892301
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>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0491F11
          Length = 152274

 Score =  224 bits (113), Expect = 2e-55
 Identities = 191/217 (88%)
 Strand = Plus / Plus

                                                                          
Query: 334    tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 393
              |||| |||||| ||||||||||| ||||||||||||||||||||||  |||||||| || 
Sbjct: 113954 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 114013

                                                                          
Query: 394    agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 453
              || || |||||| |||| |||||||||||||| || || ||||||||| |||||||||||
Sbjct: 114014 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 114073

                                                                          
Query: 454    tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 513
              |||||  ||||||| | ||| || || |||||||||||||||||||||||||| | ||||
Sbjct: 114074 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 114133

                                                   
Query: 514    ttcctgtacttgacatcccttagcatctcttgttctt 550
              |||||||||||||||||||||||||| ||||| ||||
Sbjct: 114134 ttcctgtacttgacatcccttagcatatcttgatctt 114170



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                         
Query: 32     tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 90
              |||||||||||||| |||||||||||||| ||||||||||  |||| ||||||||||||
Sbjct: 113599 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 113657
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>gb|AY108000.1| Zea mays PCO112270 mRNA sequence
          Length = 823

 Score =  224 bits (113), Expect = 2e-55
 Identities = 206/237 (86%)
 Strand = Plus / Minus

                                                                       
Query: 325 tcgatcatatccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactc 384
           ||||||||||| || |||||  |||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 423 tcgatcatatcaagggcttttatcctgtcgatctcaaagtcgatcacaggaagcagcctc 364

                                                                       
Query: 385 ctgatcgaaagaaattctttcctgttaccactgcttggtgaatggctgttacttttgatc 444
           ||||| || ||    ||||||| ||| |||||||||||||||||||| ||||||||| | 
Sbjct: 363 ctgattgatagcgtctctttccggttgccactgcttggtgaatggctattacttttgctt 304

                                                                       
Query: 445 aacctgctttgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttatacca 504
           ||||||||||||||  |||| ||| |||| ||||||||||| ||||||||||||||||||
Sbjct: 303 aacctgctttgcttattatgcctttccttagtgtcaaactcctggcttttgcttatacca 244

                                                                    
Query: 505 ggaacgaatttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcaga 561
           || | |||||||||||||||||||||||||||||| ||||| |||| ||| ||||||
Sbjct: 243 gggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgcgtcaga 187



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 31  ctcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 90
           ||||||||||| |||||||||||| ||||| |  ||||||||||||  ||||||||||||
Sbjct: 771 ctcaaaacttgtattccttgtacatgagctaagtaacacaacaaatccctttttacaata 712

                          
Query: 91  aaatttccctttcct 105
           ||||||| |||||||
Sbjct: 711 aaatttcactttcct 697
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>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0008G24
          Length = 152736

 Score =  224 bits (113), Expect = 2e-55
 Identities = 191/217 (88%)
 Strand = Plus / Plus

                                                                          
Query: 334    tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 393
              |||| |||||| ||||||||||| ||||||||||||||||||||||  |||||||| || 
Sbjct: 151846 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 151905

                                                                          
Query: 394    agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 453
              || || |||||| |||| |||||||||||||| || || ||||||||| |||||||||||
Sbjct: 151906 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 151965

                                                                          
Query: 454    tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 513
              |||||  ||||||| | ||| || || |||||||||||||||||||||||||| | ||||
Sbjct: 151966 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 152025

                                                   
Query: 514    ttcctgtacttgacatcccttagcatctcttgttctt 550
              |||||||||||||||||||||||||| ||||| ||||
Sbjct: 152026 ttcctgtacttgacatcccttagcatatcttgatctt 152062



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                         
Query: 32     tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 90
              |||||||||||||| |||||||||||||| ||||||||||  |||| ||||||||||||
Sbjct: 151491 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 151549
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>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21,
              complete sequence
          Length = 137650

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                       
Query: 461    tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 517
              ||||||||| |||||||||||||||||| || |||||||| ||||| ||||||||||
Sbjct: 108837 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 108781



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                            
Query: 334    tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 379
              |||| ||||||||||||||| || |  |||||||||||||||||||
Sbjct: 108970 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 108925
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>ref|XM_475271.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1923

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                     
Query: 461  tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 517
            ||||||||| |||||||||||||||||| || |||||||| ||||| ||||||||||
Sbjct: 1753 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 1697



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 334  tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 379
            |||| ||||||||||||||| || |  |||||||||||||||||||
Sbjct: 1886 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 1841
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                         
Query: 461      tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 517
                ||||||||| |||||||||||||||||| || |||||||| ||||| ||||||||||
Sbjct: 20982059 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 20982003



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                              
Query: 334      tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 379
                |||| ||||||||||||||| || |  |||||||||||||||||||
Sbjct: 20982192 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 20982147
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>dbj|AK121670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067N19, full
            insert sequence
          Length = 2746

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                     
Query: 461  tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 517
            ||||||||| |||||||||||||||||| || |||||||| ||||| ||||||||||
Sbjct: 2266 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 2210



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 334  tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 379
            |||| ||||||||||||||| || |  |||||||||||||||||||
Sbjct: 2399 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 2354
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>dbj|AK064776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B01, full
            insert sequence
          Length = 2805

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                     
Query: 461  tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 517
            ||||||||| |||||||||||||||||| || |||||||| ||||| ||||||||||
Sbjct: 2322 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 2266



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 334  tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 379
            |||| ||||||||||||||| || |  |||||||||||||||||||
Sbjct: 2455 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 2410
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>ref|NM_121085.1| Arabidopsis thaliana ATP binding / microtubule motor AT5G10470 mRNA,
            complete cds
          Length = 3822

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 536  gcatctcttgttcttgttgtgtcaga 561
            ||||||| ||||||||||||||||||
Sbjct: 1808 gcatctcctgttcttgttgtgtcaga 1783
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>gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0040G18, complete sequence
          Length = 172281

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 445   aacctgctttgcttcatatgtc 466
             ||||||||||||||||||||||
Sbjct: 70563 aacctgctttgcttcatatgtc 70542
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 445      aacctgctttgcttcatatgtc 466
                ||||||||||||||||||||||
Sbjct: 20741746 aacctgctttgcttcatatgtc 20741767
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>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project)
          Length = 113053

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 536   gcatctcttgttcttgttgtgtcaga 561
             ||||||| ||||||||||||||||||
Sbjct: 71377 gcatctcctgttcttgttgtgtcaga 71352
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>gb|AY100691.1| Arabidopsis thaliana geminivirus replication protein-interacting
            protein (GRIMP) mRNA, complete cds
          Length = 3822

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 536  gcatctcttgttcttgttgtgtcaga 561
            ||||||| ||||||||||||||||||
Sbjct: 1808 gcatctcctgttcttgttgtgtcaga 1783
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>gb|AC134887.4| Oryza sativa chromosome 3 BAC OSJNBa0029P07 genomic sequence, complete
             sequence
          Length = 142047

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 445   aacctgctttgcttcatatgtc 466
             ||||||||||||||||||||||
Sbjct: 31856 aacctgctttgcttcatatgtc 31877
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 445     aacctgctttgcttcatatgtc 466
               ||||||||||||||||||||||
Sbjct: 4579979 aacctgctttgcttcatatgtc 4580000
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 445      aacctgctttgcttcatatgtc 466
                ||||||||||||||||||||||
Sbjct: 18328489 aacctgctttgcttcatatgtc 18328510
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 445      aacctgctttgcttcatatgtc 466
                ||||||||||||||||||||||
Sbjct: 13215021 aacctgctttgcttcatatgtc 13215042



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 445      aacctgctttgcttcatatgtc 466
                ||||||||||||||||||||||
Sbjct: 12145784 aacctgctttgcttcatatgtc 12145763



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 445      aacctgctttgcttcatatgt 465
                |||||||||||||||||||||
Sbjct: 11675524 aacctgctttgcttcatatgt 11675544



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 445      aacctgctttgcttcatatgt 465
                |||||||||||||||||||||
Sbjct: 11586845 aacctgctttgcttcatatgt 11586865
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 445      aacctgctttgcttcatatgtc 466
                ||||||||||||||||||||||
Sbjct: 20734775 aacctgctttgcttcatatgtc 20734796
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>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0012F14
          Length = 168629

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 445    aacctgctttgcttcatatgtc 466
              ||||||||||||||||||||||
Sbjct: 132209 aacctgctttgcttcatatgtc 132230
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>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0468A12
          Length = 143018

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 445   aacctgctttgcttcatatgtc 466
             ||||||||||||||||||||||
Sbjct: 88573 aacctgctttgcttcatatgtc 88552
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>dbj|AP005502.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0473F05
          Length = 140575

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 445   aacctgctttgcttcatatgtc 466
             ||||||||||||||||||||||
Sbjct: 14658 aacctgctttgcttcatatgtc 14679
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 445     aacctgctttgcttcatatgtc 466
               ||||||||||||||||||||||
Sbjct: 4601230 aacctgctttgcttcatatgtc 4601251
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>emb|AJ001729.1|ATTH65 Arabidopsis thaliana mRNA for Cdc2a associating protein
          Length = 1182

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 536 gcatctcttgttcttgttgtgtcaga 561
           ||||||| ||||||||||||||||||
Sbjct: 392 gcatctcctgttcttgttgtgtcaga 367
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>ref|NM_195789.1| Oryza sativa (japonica cultivar-group) putative transposable
           element (OJ1325D05.26), mRNA
          Length = 2109

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 445 aacctgctttgcttcatatgt 465
           |||||||||||||||||||||
Sbjct: 312 aacctgctttgcttcatatgt 292
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>gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1325D05,
              complete sequence
          Length = 169500

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 445    aacctgctttgcttcatatgt 465
              |||||||||||||||||||||
Sbjct: 132779 aacctgctttgcttcatatgt 132759
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>emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 in linkage group 5,
              complete sequence
          Length = 193735

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     aaattgctttttacaataaaa 93
              |||||||||||||||||||||
Sbjct: 175104 aaattgctttttacaataaaa 175124
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>gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162029

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    ttttacaataaaatttccctt 101
             |||||||||||||||||||||
Sbjct: 86480 ttttacaataaaatttccctt 86460
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 445     aacctgctttgcttcatatgt 465
               |||||||||||||||||||||
Sbjct: 9055945 aacctgctttgcttcatatgt 9055965
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>gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0027A14, from chromosome 10, complete sequence
          Length = 175667

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 445    aacctgctttgcttcatatgt 465
              |||||||||||||||||||||
Sbjct: 144168 aacctgctttgcttcatatgt 144188
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>gb|AC096555.1| Homo sapiens BAC clone RP11-78N15 from 2, complete sequence
          Length = 155942

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 73     aaattgctttttacaataaaatttc 97
              ||||||||||||| |||||||||||
Sbjct: 139177 aaattgctttttataataaaatttc 139201
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 445   aacctgctttgcttcatatgt 465
             |||||||||||||||||||||
Sbjct: 24066 aacctgctttgcttcatatgt 24086
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>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0414E10
          Length = 141760

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 445   aacctgctttgcttcatatgt 465
             |||||||||||||||||||||
Sbjct: 64731 aacctgctttgcttcatatgt 64751
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>emb|AL807388.8| Mouse DNA sequence from clone RP23-255K14 on chromosome X, complete
             sequence
          Length = 157955

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 400   tctttcctgttaccactgctt 420
             |||||||||||||||||||||
Sbjct: 19383 tctttcctgttaccactgctt 19403
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 445     aacctgctttgcttcatatgt 465
               |||||||||||||||||||||
Sbjct: 9061084 aacctgctttgcttcatatgt 9061104
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     atcggcatgccttcgctgcg 192
               ||||||||||||||||||||
Sbjct: 2105607 atcggcatgccttcgctgcg 2105626
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>emb|BX294177.35| Zebrafish DNA sequence from clone CH211-281O13 in linkage group 12,
             complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aacaaattgctttttacaat 89
             ||||||||||||||||||||
Sbjct: 38378 aacaaattgctttttacaat 38359
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>gb|AC105470.17| Rattus norvegicus 10 BAC CH230-192N7 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 212491

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tttccctttccttttcaccc 113
             ||||||||||||||||||||
Sbjct: 28337 tttccctttccttttcaccc 28318
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>gb|AY600625.1| Hepatozoon sp. BV2 18S ribosomal RNA gene, partial sequence
          Length = 1774

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  aaattgctttttacaataaa 92
           ||||||||||||||||||||
Sbjct: 752 aaattgctttttacaataaa 733
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>gb|AC133167.3| Mus musculus BAC clone RP24-211H4 from chromosome 18, complete sequence
          Length = 159356

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   attctttcctgttaccactg 417
             ||||||||||||||||||||
Sbjct: 91977 attctttcctgttaccactg 91996
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>gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosome 13, complete sequence
          Length = 175354

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     aatttccctttccttttcac 111
              ||||||||||||||||||||
Sbjct: 134309 aatttccctttccttttcac 134290
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>gb|AC098708.3| Mus musculus BAC clone RP23-1I16 from 13, complete sequence
          Length = 200069

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 92   aatttccctttccttttcac 111
            ||||||||||||||||||||
Sbjct: 3135 aatttccctttccttttcac 3116
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>gb|U80452.2| Caenorhabditis elegans cosmid C16C8, complete sequence
          Length = 42300

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    aaattgctttttacaataaaattt 96
             ||||||||||||| ||||||||||
Sbjct: 24388 aaattgctttttaaaataaaattt 24411
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>emb|AL606517.14| Human DNA sequence from clone RP11-182I10 on chromosome 1 Contains the
             5' end of the JAK1 gene for anus kinase 1 (a protein
             tyrosine kinase), a NADH dehydrogenase (ubiquinone) 1
             alpha subcomplex 4 9kDa (NDUFA4) pseudogene, a SIPL
             protein (SIPL) pseudogene, part of a novel gene, a solute
             carrier family 2 (facilitated glucose transporter) member
             14 (SLC2A14) pseudogene and a CpG island, complete
             sequence
          Length = 74530

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 455   gcttcatatgtcttgcctttgtgt 478
             ||||||||||| ||||||||||||
Sbjct: 19352 gcttcatatgttttgcctttgtgt 19329
to top
>emb|AL359747.14| Human DNA sequence from clone RP11-107C16 on chromosome 10 Contains
            the 3' end of a deleted in malignant brain tumors 1
            (DMBT1) pseudogene and the 3' end of the ERG-1 gene for
            estrogen regulated gene 1 (UO-44), complete sequence
          Length = 33281

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  tcaaagtacccaggacttgg 285
            ||||||||||||||||||||
Sbjct: 5450 tcaaagtacccaggacttgg 5431
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    atcggcatgccttcgctgcg 192
              ||||||||||||||||||||
Sbjct: 267194 atcggcatgccttcgctgcg 267213
to top
>emb|BX571959.8| Zebrafish DNA sequence from clone DKEY-46I6 in linkage group 12,
             complete sequence
          Length = 116374

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aacaaattgctttttacaat 89
             ||||||||||||||||||||
Sbjct: 37031 aacaaattgctttttacaat 37012
to top
>gb|AC109465.3| Homo sapiens chromosome 5 clone RP11-298P6, complete sequence
          Length = 188150

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    gaaagaaattctttcctgtt 410
              ||||||||||||||||||||
Sbjct: 117448 gaaagaaattctttcctgtt 117467
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     atcggcatgccttcgctgcg 192
               ||||||||||||||||||||
Sbjct: 2057846 atcggcatgccttcgctgcg 2057827
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>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence
          Length = 190701

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   ttagcatctcttgttcttgt 552
             ||||||||||||||||||||
Sbjct: 84960 ttagcatctcttgttcttgt 84979
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>emb|BX247864.10| Zebrafish DNA sequence from clone CH211-225P16, complete sequence
          Length = 208758

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ttccctttccttttcacccc 114
             ||||||||||||||||||||
Sbjct: 79476 ttccctttccttttcacccc 79495
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>gb|AY252103.1| Hepatozoon sp. Boiga isolate 1 small subunit ribosomal RNA gene,
           partial sequence
          Length = 579

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  aaattgctttttacaataaa 92
           ||||||||||||||||||||
Sbjct: 422 aaattgctttttacaataaa 403
to top
>gb|AF067219.1| Caenorhabditis elegans cosmid R12E2, complete sequence
          Length = 39439

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   aaattgctttttacaataaa 92
            ||||||||||||||||||||
Sbjct: 7468 aaattgctttttacaataaa 7487
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>dbj|AB125503.1| Testudo horsfieldii DNA, CryIB SINE and its flanking sequence of
           TTh04
          Length = 465

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 513 tttcctgtacttgacatccc 532
           ||||||||||||||||||||
Sbjct: 298 tttcctgtacttgacatccc 279
to top
>emb|BX649594.7| Zebrafish DNA sequence from clone CH211-194N6 in linkage group 18,
             complete sequence
          Length = 195263

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ttccctttccttttcacccc 114
             ||||||||||||||||||||
Sbjct: 10672 ttccctttccttttcacccc 10653
to top
>emb|AL672097.5| Zebrafish DNA sequence from clone BUSM1-37O5 in linkage group 9,
             complete sequence
          Length = 100381

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    tgctttttacaataaaattt 96
             ||||||||||||||||||||
Sbjct: 33306 tgctttttacaataaaattt 33287
to top
>emb|AL935307.9| Zebrafish DNA sequence from clone DKEY-63P22, complete sequence
          Length = 234744

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    tgctttttacaataaaattt 96
             ||||||||||||||||||||
Sbjct: 78954 tgctttttacaataaaattt 78973
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>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence
          Length = 227785

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    attctttcctgttaccactg 417
              ||||||||||||||||||||
Sbjct: 189778 attctttcctgttaccactg 189797
to top
>gb|AY068866.1| Schmidtea mediterranea clone H.17.6g(T3) unknown mRNA sequence
          Length = 407

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 472 tttgtgtcaaactcttggct 491
           ||||||||||||||||||||
Sbjct: 319 tttgtgtcaaactcttggct 338


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,442,600
Number of Sequences: 3902068
Number of extensions: 5442600
Number of successful extensions: 113894
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113426
Number of HSP's gapped (non-prelim): 467
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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