ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK121122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 6e-61
2gb|BT018469.1| Zea mays clone EL01N0420G07.d mRNA sequence 226 4e-56
3gb|AY103582.1| Zea mays PCO147975 mRNA sequence 226 4e-56
4ref|XM_472364.1| Oryza sativa (japonica cultivar-group), predic... 214 1e-52
5emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
7gb|AC137749.11| Mus musculus chromosome 6, clone RP23-69C16, com... 48 0.018
8gb|AC036121.11| Mus musculus chromosome 6, clone RP23-158O9, com... 48 0.018
9gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 42 1.1
10emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chrom... 40 4.5
11emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chr... 40 4.5
12gb|AC069426.9| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Canc... 40 4.5
13gb|AC103798.2| Homo sapiens chromosome 11, clone RP11-159D8, com... 40 4.5
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
15dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
16emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chro... 40 4.5

>dbj|AK121122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074I17, full
            insert sequence
          Length = 1923

 Score =  242 bits (122), Expect = 6e-61
 Identities = 269/318 (84%)
 Strand = Plus / Minus

                                                                        
Query: 21   tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 80
            |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| ||||||
Sbjct: 1853 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 1794

                                                                        
Query: 81   tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctggaacagacaat 140
            |||||| || |  || | ||||||||| |||| |  ||||||||||||||| | ||||||
Sbjct: 1793 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctggagctgacaat 1734

                                                                        
Query: 141  tgatccaacacctcaagcaacgtactcgtgctcaaacaggtatgacacggtctccgccca 200
            || ||||| ||||| || || ||||| |||||||| |||||||||||  |||| || |||
Sbjct: 1733 tgctccaaaacctccaggaaggtactagtgctcaagcaggtatgacagtgtcttcggcca 1674

                                                                        
Query: 201  ttcacctgatattgcagctccaaagcattctccacggtcaattgctcaagtttaatgcaa 260
            |||||||| |||||||||||||| |||| |||||| ||||  || ||||| | ||| | |
Sbjct: 1673 ttcacctggtattgcagctccaaggcatgctccaccgtcacctgttcaagctcaatacga 1614

                                                                        
Query: 261  gtgtaaacatcattcttcgccagagccatgatatcactgagtgagtagacatcaagaagg 320
            ||||| |||||||||||  | |||||||||||||||||||| |||||||||||||| || 
Sbjct: 1613 gtgtagacatcattcttgcctagagccatgatatcactgagcgagtagacatcaaggaga 1554

                              
Query: 321  gatccattatcatcaact 338
            |  |||||||| ||||||
Sbjct: 1553 gcgccattatcgtcaact 1536



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>gb|BT018469.1| Zea mays clone EL01N0420G07.d mRNA sequence
          Length = 1601

 Score =  226 bits (114), Expect = 4e-56
 Identities = 279/333 (83%), Gaps = 2/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    ttttcatgtatgaaatggctacacaaatgttatccaaggagaaatgttattgcgtctctc 65
            |||||||||||| ||||||||||||  || ||||||||||||||||| | | ||||||||
Sbjct: 1512 ttttcatgtatggaatggctacaca--tgctatccaaggagaaatgtaaatacgtctctc 1455

                                                                        
Query: 66   aatgagataattccttgcacagatttagtcatcggttcaatagcgacaagccgccgcacc 125
            |||||||| ||||||| |||| || | ||  |  |||||||| | |||||||| ||||| 
Sbjct: 1454 aatgagatgattccttccacaaatctggtactttgttcaataacaacaagccgtcgcact 1395

                                                                        
Query: 126  cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 185
            |||||||  ||||||   ||||| || || ||||| ||||||||    ||||| ||||||
Sbjct: 1394 cctggaatggacaatccctccaaaacttccagcaaggtactcgtctgtaaacaagtatga 1335

                                                                        
Query: 186  cacggtctccgcccattcacctgatattgcagctccaaagcattctccacggtcaattgc 245
            ||| |||| || |||| |||||| |||||||  ||||||||||| |  ||||||| ||| 
Sbjct: 1334 cactgtcttcggccatgcacctggtattgcacatccaaagcattttgtacggtcacttgt 1275

                                                                        
Query: 246  tcaagtttaatgcaagtgtaaacatcattcttcgccagagccatgatatcactgagtgag 305
            |||||||  |||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 tcaagttcgatgcgagcataaacatcattcttcgccagagccatgatatcactgagtgag 1215

                                             
Query: 306  tagacatcaagaagggatccattatcatcaact 338
            ||||||||| | ||||||||||| |||||||||
Sbjct: 1214 tagacatcacggagggatccattgtcatcaact 1182



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>gb|AY103582.1| Zea mays PCO147975 mRNA sequence
          Length = 1690

 Score =  226 bits (114), Expect = 4e-56
 Identities = 279/333 (83%), Gaps = 2/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    ttttcatgtatgaaatggctacacaaatgttatccaaggagaaatgttattgcgtctctc 65
            |||||||||||| ||||||||||||  || ||||||||||||||||| | | ||||||||
Sbjct: 1606 ttttcatgtatggaatggctacaca--tgctatccaaggagaaatgtaaatacgtctctc 1549

                                                                        
Query: 66   aatgagataattccttgcacagatttagtcatcggttcaatagcgacaagccgccgcacc 125
            |||||||| ||||||| |||| || | ||  |  |||||||| | |||||||| ||||| 
Sbjct: 1548 aatgagatgattccttccacaaatctggtactttgttcaataacaacaagccgtcgcact 1489

                                                                        
Query: 126  cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 185
            |||||||  ||||||   ||||| || || ||||| ||||||||    ||||| ||||||
Sbjct: 1488 cctggaatggacaatccctccaaaacttccagcaaggtactcgtctgtaaacaagtatga 1429

                                                                        
Query: 186  cacggtctccgcccattcacctgatattgcagctccaaagcattctccacggtcaattgc 245
            ||| |||| || |||| |||||| |||||||  ||||||||||| |  ||||||| ||| 
Sbjct: 1428 cactgtcttcggccatgcacctggtattgcacatccaaagcattttgtacggtcacttgt 1369

                                                                        
Query: 246  tcaagtttaatgcaagtgtaaacatcattcttcgccagagccatgatatcactgagtgag 305
            |||||||  |||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 tcaagttcgatgcgagcataaacatcattcttcgccagagccatgatatcactgagtgag 1309

                                             
Query: 306  tagacatcaagaagggatccattatcatcaact 338
            ||||||||| | ||||||||||| |||||||||
Sbjct: 1308 tagacatcacggagggatccattgtcatcaact 1276



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>ref|XM_472364.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1356

 Score =  214 bits (108), Expect = 1e-52
 Identities = 255/304 (83%)
 Strand = Plus / Minus

                                                                        
Query: 35   ttatccaaggagaaatgttattgcgtctctcaatgagataattccttgcacagatttagt 94
            |||||||| ||||||||| | |||||| ||||||||||| |||||||||||| || |  |
Sbjct: 1356 ttatccaatgagaaatgtaaatgcgtccctcaatgagattattccttgcacaaatctgct 1297

                                                                        
Query: 95   catcggttcaatagcgacaagccgccgcacccctggaacagacaattgatccaacacctc 154
            | | ||||||||| |||| |  ||||||||||||||| | |||||||| ||||| |||||
Sbjct: 1296 ccttggttcaataacgacgactcgccgcacccctggagctgacaattgctccaaaacctc 1237

                                                                        
Query: 155  aagcaacgtactcgtgctcaaacaggtatgacacggtctccgcccattcacctgatattg 214
             || || ||||| |||||||| |||||||||||  |||| || ||||||||||| |||||
Sbjct: 1236 caggaaggtactagtgctcaagcaggtatgacagtgtcttcggccattcacctggtattg 1177

                                                                        
Query: 215  cagctccaaagcattctccacggtcaattgctcaagtttaatgcaagtgtaaacatcatt 274
            ||||||||| |||| |||||| ||||  || ||||| | ||| | |||||| ||||||||
Sbjct: 1176 cagctccaaggcatgctccaccgtcacctgttcaagctcaatacgagtgtagacatcatt 1117

                                                                        
Query: 275  cttcgccagagccatgatatcactgagtgagtagacatcaagaagggatccattatcatc 334
            |||  | |||||||||||||||||||| |||||||||||||| || |  |||||||| ||
Sbjct: 1116 cttgcctagagccatgatatcactgagcgagtagacatcaaggagagcgccattatcgtc 1057

                
Query: 335  aact 338
            ||||
Sbjct: 1056 aact 1053



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>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08,
             complete sequence
          Length = 106975

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                         
Query: 21    tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 80
             |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| ||||||
Sbjct: 14835 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 14894

                                                              
Query: 81    tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctg 129
             |||||| || |  || | ||||||||| |||| |  |||||||||||||
Sbjct: 14895 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctg 14943



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 84/98 (85%)
 Strand = Plus / Plus

                                                                         
Query: 126   cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 185
             |||||| | |||||||| ||||| ||||| || || ||||| |||||||| |||||||||
Sbjct: 15055 cctggagctgacaattgctccaaaacctccaggaaggtactagtgctcaagcaggtatga 15114

                                                   
Query: 186   cacggtctccgcccattcacctgatattgcagctccaa 223
             ||  |||| || ||||||||||| ||||||||||||||
Sbjct: 15115 cagtgtcttcggccattcacctggtattgcagctccaa 15152



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 260   agtgtaaacatcattcttcgccagagccatgatatcactg 299
             |||||| |||||||||||  | ||||||||||||||||||
Sbjct: 15942 agtgtagacatcattcttgcctagagccatgatatcactg 15981



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                            
Query: 21       tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 80
                |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| ||||||
Sbjct: 19860027 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 19860086

                                                                 
Query: 81       tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctg 129
                |||||| || |  || | ||||||||| |||| |  |||||||||||||
Sbjct: 19860087 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctg 19860135



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 84/98 (85%)
 Strand = Plus / Plus

                                                                            
Query: 126      cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 185
                |||||| | |||||||| ||||| ||||| || || ||||| |||||||| |||||||||
Sbjct: 19860247 cctggagctgacaattgctccaaaacctccaggaaggtactagtgctcaagcaggtatga 19860306

                                                      
Query: 186      cacggtctccgcccattcacctgatattgcagctccaa 223
                ||  |||| || ||||||||||| ||||||||||||||
Sbjct: 19860307 cagtgtcttcggccattcacctggtattgcagctccaa 19860344



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 260      agtgtaaacatcattcttcgccagagccatgatatcactg 299
                |||||| |||||||||||  | ||||||||||||||||||
Sbjct: 19861134 agtgtagacatcattcttgcctagagccatgatatcactg 19861173



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>gb|AC137749.11| Mus musculus chromosome 6, clone RP23-69C16, complete sequence
          Length = 293695

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 283    gagccatgatatcactgagtgagtagac 310
              |||||||||||||||||||| |||||||
Sbjct: 206083 gagccatgatatcactgagtcagtagac 206110



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>gb|AC036121.11| Mus musculus chromosome 6, clone RP23-158O9, complete sequence
          Length = 215685

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 283   gagccatgatatcactgagtgagtagac 310
             |||||||||||||||||||| |||||||
Sbjct: 97586 gagccatgatatcactgagtcagtagac 97613



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    gccgccgcacccctggaacag 135
              |||||||||||||||||||||
Sbjct: 403823 gccgccgcacccctggaacag 403843



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>emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chromosome 1 Contains the 5'
             end of a novel pseudogene and a guanylate binding protein
             pseudogene, complete sequence
          Length = 68235

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    tcaatgagataattccttgc 83
             ||||||||||||||||||||
Sbjct: 54856 tcaatgagataattccttgc 54875



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>emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chromosome 13 Contains two
             CpG islands, complete sequence
          Length = 123887

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   cctgatattgcagctccaaa 224
             ||||||||||||||||||||
Sbjct: 48003 cctgatattgcagctccaaa 47984



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>gb|AC069426.9| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 128500

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   caagtgtaaacatcattctt 277
             ||||||||||||||||||||
Sbjct: 71790 caagtgtaaacatcattctt 71771



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>gb|AC103798.2| Homo sapiens chromosome 11, clone RP11-159D8, complete sequence
          Length = 163680

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    agaaatgttattgcgtctct 64
             ||||||||||||||||||||
Sbjct: 65080 agaaatgttattgcgtctct 65061



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 14      tatgaaatggctacacaaat 33
               ||||||||||||||||||||
Sbjct: 3929347 tatgaaatggctacacaaat 3929366



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>dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0030G02
          Length = 187265

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tatgaaatggctacacaaat 33
              ||||||||||||||||||||
Sbjct: 127818 tatgaaatggctacacaaat 127837



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>emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chromosome 1, complete
             sequence
          Length = 101854

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    tcaatgagataattccttgc 83
             ||||||||||||||||||||
Sbjct: 55110 tcaatgagataattccttgc 55091


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,706,374
Number of Sequences: 3902068
Number of extensions: 2706374
Number of successful extensions: 59912
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59838
Number of HSP's gapped (non-prelim): 66
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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