| Clone Name | rbaal41d17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074I17, full insert sequence Length = 1923 Score = 242 bits (122), Expect = 6e-61 Identities = 269/318 (84%) Strand = Plus / Minus Query: 21 tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 80 |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| |||||| Sbjct: 1853 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 1794 Query: 81 tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctggaacagacaat 140 |||||| || | || | ||||||||| |||| | ||||||||||||||| | |||||| Sbjct: 1793 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctggagctgacaat 1734 Query: 141 tgatccaacacctcaagcaacgtactcgtgctcaaacaggtatgacacggtctccgccca 200 || ||||| ||||| || || ||||| |||||||| ||||||||||| |||| || ||| Sbjct: 1733 tgctccaaaacctccaggaaggtactagtgctcaagcaggtatgacagtgtcttcggcca 1674 Query: 201 ttcacctgatattgcagctccaaagcattctccacggtcaattgctcaagtttaatgcaa 260 |||||||| |||||||||||||| |||| |||||| |||| || ||||| | ||| | | Sbjct: 1673 ttcacctggtattgcagctccaaggcatgctccaccgtcacctgttcaagctcaatacga 1614 Query: 261 gtgtaaacatcattcttcgccagagccatgatatcactgagtgagtagacatcaagaagg 320 ||||| ||||||||||| | |||||||||||||||||||| |||||||||||||| || Sbjct: 1613 gtgtagacatcattcttgcctagagccatgatatcactgagcgagtagacatcaaggaga 1554 Query: 321 gatccattatcatcaact 338 | |||||||| |||||| Sbjct: 1553 gcgccattatcgtcaact 1536
>gb|BT018469.1| Zea mays clone EL01N0420G07.d mRNA sequence Length = 1601 Score = 226 bits (114), Expect = 4e-56 Identities = 279/333 (83%), Gaps = 2/333 (0%) Strand = Plus / Minus Query: 6 ttttcatgtatgaaatggctacacaaatgttatccaaggagaaatgttattgcgtctctc 65 |||||||||||| |||||||||||| || ||||||||||||||||| | | |||||||| Sbjct: 1512 ttttcatgtatggaatggctacaca--tgctatccaaggagaaatgtaaatacgtctctc 1455 Query: 66 aatgagataattccttgcacagatttagtcatcggttcaatagcgacaagccgccgcacc 125 |||||||| ||||||| |||| || | || | |||||||| | |||||||| ||||| Sbjct: 1454 aatgagatgattccttccacaaatctggtactttgttcaataacaacaagccgtcgcact 1395 Query: 126 cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 185 ||||||| |||||| ||||| || || ||||| |||||||| ||||| |||||| Sbjct: 1394 cctggaatggacaatccctccaaaacttccagcaaggtactcgtctgtaaacaagtatga 1335 Query: 186 cacggtctccgcccattcacctgatattgcagctccaaagcattctccacggtcaattgc 245 ||| |||| || |||| |||||| ||||||| ||||||||||| | ||||||| ||| Sbjct: 1334 cactgtcttcggccatgcacctggtattgcacatccaaagcattttgtacggtcacttgt 1275 Query: 246 tcaagtttaatgcaagtgtaaacatcattcttcgccagagccatgatatcactgagtgag 305 ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 tcaagttcgatgcgagcataaacatcattcttcgccagagccatgatatcactgagtgag 1215 Query: 306 tagacatcaagaagggatccattatcatcaact 338 ||||||||| | ||||||||||| ||||||||| Sbjct: 1214 tagacatcacggagggatccattgtcatcaact 1182
>gb|AY103582.1| Zea mays PCO147975 mRNA sequence Length = 1690 Score = 226 bits (114), Expect = 4e-56 Identities = 279/333 (83%), Gaps = 2/333 (0%) Strand = Plus / Minus Query: 6 ttttcatgtatgaaatggctacacaaatgttatccaaggagaaatgttattgcgtctctc 65 |||||||||||| |||||||||||| || ||||||||||||||||| | | |||||||| Sbjct: 1606 ttttcatgtatggaatggctacaca--tgctatccaaggagaaatgtaaatacgtctctc 1549 Query: 66 aatgagataattccttgcacagatttagtcatcggttcaatagcgacaagccgccgcacc 125 |||||||| ||||||| |||| || | || | |||||||| | |||||||| ||||| Sbjct: 1548 aatgagatgattccttccacaaatctggtactttgttcaataacaacaagccgtcgcact 1489 Query: 126 cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 185 ||||||| |||||| ||||| || || ||||| |||||||| ||||| |||||| Sbjct: 1488 cctggaatggacaatccctccaaaacttccagcaaggtactcgtctgtaaacaagtatga 1429 Query: 186 cacggtctccgcccattcacctgatattgcagctccaaagcattctccacggtcaattgc 245 ||| |||| || |||| |||||| ||||||| ||||||||||| | ||||||| ||| Sbjct: 1428 cactgtcttcggccatgcacctggtattgcacatccaaagcattttgtacggtcacttgt 1369 Query: 246 tcaagtttaatgcaagtgtaaacatcattcttcgccagagccatgatatcactgagtgag 305 ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1368 tcaagttcgatgcgagcataaacatcattcttcgccagagccatgatatcactgagtgag 1309 Query: 306 tagacatcaagaagggatccattatcatcaact 338 ||||||||| | ||||||||||| ||||||||| Sbjct: 1308 tagacatcacggagggatccattgtcatcaact 1276
>ref|XM_472364.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 214 bits (108), Expect = 1e-52 Identities = 255/304 (83%) Strand = Plus / Minus Query: 35 ttatccaaggagaaatgttattgcgtctctcaatgagataattccttgcacagatttagt 94 |||||||| ||||||||| | |||||| ||||||||||| |||||||||||| || | | Sbjct: 1356 ttatccaatgagaaatgtaaatgcgtccctcaatgagattattccttgcacaaatctgct 1297 Query: 95 catcggttcaatagcgacaagccgccgcacccctggaacagacaattgatccaacacctc 154 | | ||||||||| |||| | ||||||||||||||| | |||||||| ||||| ||||| Sbjct: 1296 ccttggttcaataacgacgactcgccgcacccctggagctgacaattgctccaaaacctc 1237 Query: 155 aagcaacgtactcgtgctcaaacaggtatgacacggtctccgcccattcacctgatattg 214 || || ||||| |||||||| ||||||||||| |||| || ||||||||||| ||||| Sbjct: 1236 caggaaggtactagtgctcaagcaggtatgacagtgtcttcggccattcacctggtattg 1177 Query: 215 cagctccaaagcattctccacggtcaattgctcaagtttaatgcaagtgtaaacatcatt 274 ||||||||| |||| |||||| |||| || ||||| | ||| | |||||| |||||||| Sbjct: 1176 cagctccaaggcatgctccaccgtcacctgttcaagctcaatacgagtgtagacatcatt 1117 Query: 275 cttcgccagagccatgatatcactgagtgagtagacatcaagaagggatccattatcatc 334 ||| | |||||||||||||||||||| |||||||||||||| || | |||||||| || Sbjct: 1116 cttgcctagagccatgatatcactgagcgagtagacatcaaggagagcgccattatcgtc 1057 Query: 335 aact 338 |||| Sbjct: 1056 aact 1053
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 97.6 bits (49), Expect = 2e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 21 tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 80 |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| |||||| Sbjct: 14835 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 14894 Query: 81 tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctg 129 |||||| || | || | ||||||||| |||| | ||||||||||||| Sbjct: 14895 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctg 14943 Score = 83.8 bits (42), Expect = 3e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 126 cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 185 |||||| | |||||||| ||||| ||||| || || ||||| |||||||| ||||||||| Sbjct: 15055 cctggagctgacaattgctccaaaacctccaggaaggtactagtgctcaagcaggtatga 15114 Query: 186 cacggtctccgcccattcacctgatattgcagctccaa 223 || |||| || ||||||||||| |||||||||||||| Sbjct: 15115 cagtgtcttcggccattcacctggtattgcagctccaa 15152 Score = 48.1 bits (24), Expect = 0.018 Identities = 36/40 (90%) Strand = Plus / Plus Query: 260 agtgtaaacatcattcttcgccagagccatgatatcactg 299 |||||| ||||||||||| | |||||||||||||||||| Sbjct: 15942 agtgtagacatcattcttgcctagagccatgatatcactg 15981
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 97.6 bits (49), Expect = 2e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 21 tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 80 |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| |||||| Sbjct: 19860027 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 19860086 Query: 81 tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctg 129 |||||| || | || | ||||||||| |||| | ||||||||||||| Sbjct: 19860087 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctg 19860135 Score = 83.8 bits (42), Expect = 3e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 126 cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 185 |||||| | |||||||| ||||| ||||| || || ||||| |||||||| ||||||||| Sbjct: 19860247 cctggagctgacaattgctccaaaacctccaggaaggtactagtgctcaagcaggtatga 19860306 Query: 186 cacggtctccgcccattcacctgatattgcagctccaa 223 || |||| || ||||||||||| |||||||||||||| Sbjct: 19860307 cagtgtcttcggccattcacctggtattgcagctccaa 19860344 Score = 48.1 bits (24), Expect = 0.018 Identities = 36/40 (90%) Strand = Plus / Plus Query: 260 agtgtaaacatcattcttcgccagagccatgatatcactg 299 |||||| ||||||||||| | |||||||||||||||||| Sbjct: 19861134 agtgtagacatcattcttgcctagagccatgatatcactg 19861173
>gb|AC137749.11| Mus musculus chromosome 6, clone RP23-69C16, complete sequence Length = 293695 Score = 48.1 bits (24), Expect = 0.018 Identities = 27/28 (96%) Strand = Plus / Plus Query: 283 gagccatgatatcactgagtgagtagac 310 |||||||||||||||||||| ||||||| Sbjct: 206083 gagccatgatatcactgagtcagtagac 206110
>gb|AC036121.11| Mus musculus chromosome 6, clone RP23-158O9, complete sequence Length = 215685 Score = 48.1 bits (24), Expect = 0.018 Identities = 27/28 (96%) Strand = Plus / Plus Query: 283 gagccatgatatcactgagtgagtagac 310 |||||||||||||||||||| ||||||| Sbjct: 97586 gagccatgatatcactgagtcagtagac 97613
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gccgccgcacccctggaacag 135 ||||||||||||||||||||| Sbjct: 403823 gccgccgcacccctggaacag 403843
>emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chromosome 1 Contains the 5' end of a novel pseudogene and a guanylate binding protein pseudogene, complete sequence Length = 68235 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tcaatgagataattccttgc 83 |||||||||||||||||||| Sbjct: 54856 tcaatgagataattccttgc 54875
>emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chromosome 13 Contains two CpG islands, complete sequence Length = 123887 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cctgatattgcagctccaaa 224 |||||||||||||||||||| Sbjct: 48003 cctgatattgcagctccaaa 47984
>gb|AC069426.9| Homo sapiens 3 BAC RP11-200O17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128500 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 caagtgtaaacatcattctt 277 |||||||||||||||||||| Sbjct: 71790 caagtgtaaacatcattctt 71771
>gb|AC103798.2| Homo sapiens chromosome 11, clone RP11-159D8, complete sequence Length = 163680 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 agaaatgttattgcgtctct 64 |||||||||||||||||||| Sbjct: 65080 agaaatgttattgcgtctct 65061
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tatgaaatggctacacaaat 33 |||||||||||||||||||| Sbjct: 3929347 tatgaaatggctacacaaat 3929366
>dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030G02 Length = 187265 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tatgaaatggctacacaaat 33 |||||||||||||||||||| Sbjct: 127818 tatgaaatggctacacaaat 127837
>emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chromosome 1, complete sequence Length = 101854 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tcaatgagataattccttgc 83 |||||||||||||||||||| Sbjct: 55110 tcaatgagataattccttgc 55091 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,706,374 Number of Sequences: 3902068 Number of extensions: 2706374 Number of successful extensions: 59912 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59838 Number of HSP's gapped (non-prelim): 66 length of query: 339 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 317 effective length of database: 17,147,199,772 effective search space: 5435662327724 effective search space used: 5435662327724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)