ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40o17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WBP2_MOUSE (P97765) WW domain-binding protein 2 (WBP-2) 36 0.096
2WBP2_HUMAN (Q969T9) WW domain-binding protein 2 (WBP-2) 35 0.21
3WBP2_RAT (Q8R478) WW domain-binding protein 2 (WBP-2) 35 0.28
4SEC16_SCHPO (O14029) Multidomain vesicle coat protein 34 0.37
5CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor... 31 4.1
6C3AR_CAVPO (O88680) C3a anaphylatoxin chemotactic receptor (C3a-... 30 6.9
7ATF7_MOUSE (Q8R0S1) Cyclic AMP-dependent transcription factor AT... 30 9.0
8ZSWM4_MOUSE (Q8C7B8) Zinc finger SWIM domain-containing protein 4 30 9.0

>WBP2_MOUSE (P97765) WW domain-binding protein 2 (WBP-2)|
          Length = 261

 Score = 36.2 bits (82), Expect = 0.096
 Identities = 24/94 (25%), Positives = 43/94 (45%)
 Frame = -3

Query: 674 KGTIYLSNIRMVFVAAKPIGNFFAFDMPLLYVHGEKFNQPIFHCNNISGFVEPVVPESQN 495
           KGT+YL+  R++F++ K      +F MP   +   +  QP+F  N    F++ +V     
Sbjct: 47  KGTVYLTPYRVIFLS-KGKDAMQSFMMPFYLMKDCEIKQPVFGAN----FIKGIVKAEAG 101

Query: 494 RALYSTHTFKILFKEGGCGTFVPLFLNLITSVRR 393
                + ++K+ F  GG   F    L + +   R
Sbjct: 102 GGWEGSASYKLTFTAGGAIEFGQRMLQVASQASR 135



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>WBP2_HUMAN (Q969T9) WW domain-binding protein 2 (WBP-2)|
          Length = 261

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 25/94 (26%), Positives = 41/94 (43%)
 Frame = -3

Query: 674 KGTIYLSNIRMVFVAAKPIGNFFAFDMPLLYVHGEKFNQPIFHCNNISGFVEPVVPESQN 495
           KGT+YL+  R++F++ K      +F MP   +   +  QP+F  N I G     V     
Sbjct: 47  KGTVYLTPYRVIFLS-KGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKG----TVKAEAG 101

Query: 494 RALYSTHTFKILFKEGGCGTFVPLFLNLITSVRR 393
                + ++K+ F  GG   F    L + +   R
Sbjct: 102 GGWEGSASYKLTFTAGGAIEFGQRMLQVASQASR 135



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>WBP2_RAT (Q8R478) WW domain-binding protein 2 (WBP-2)|
          Length = 262

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 24/94 (25%), Positives = 42/94 (44%)
 Frame = -3

Query: 674 KGTIYLSNIRMVFVAAKPIGNFFAFDMPLLYVHGEKFNQPIFHCNNISGFVEPVVPESQN 495
           KGT+YL+  R++F+ +K      +F MP   +   +  QP+F  N    F++  V     
Sbjct: 47  KGTVYLTPYRVIFL-SKGKDAMRSFMMPFYLMKDCEVKQPVFGAN----FIKGTVKAEAG 101

Query: 494 RALYSTHTFKILFKEGGCGTFVPLFLNLITSVRR 393
                + ++K+ F  GG   F    L + +   R
Sbjct: 102 GGWEGSASYKLTFTAGGAIEFGQQMLQVASQASR 135



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>SEC16_SCHPO (O14029) Multidomain vesicle coat protein|
          Length = 1995

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -3

Query: 563  NQPIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLF---LNLITSVRR 393
            NQP+ H +N+   V PVV  +++  L    T +  F  G CGT V  F     L T+  +
Sbjct: 1061 NQPLLH-SNLHSPVSPVVDSNEDSRLKFLSTQRPAFSFGPCGTIVMAFSTPSGLYTTSGK 1119

Query: 392  HNQFEAQPATVPRV 351
              +F A P  + ++
Sbjct: 1120 GTKFIAGPIKIEKL 1133



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>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
            (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth
            factor-like domains 2) (Epidermal growth factor-like 1)
          Length = 3312

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = -2

Query: 516  GCSRKPEQGFVLHPHLQDLVQGRWMWHLC----ATLPEPDHVSAAPQSV*SPACYRAPCG 349
            G + +  QG V        +QG W+        A LP    V+A P  V + AC   PC 
Sbjct: 1903 GSAEEAPQGLV------GCIQGVWLGSTPSGSPALLPPSHRVNAEPGCVVTNACASGPCP 1956

Query: 348  PHA 340
            PHA
Sbjct: 1957 PHA 1959



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>C3AR_CAVPO (O88680) C3a anaphylatoxin chemotactic receptor (C3a-R) (C3AR)|
          Length = 475

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -1

Query: 169 VFSTIYMWCTRAIYLFGVILVILS-EERGGSILLALSWTIVCLAVDSA 29
           V  TI++ C    ++FGV+++ ++ E R G+ L  LSW  V +A+ SA
Sbjct: 372 VVVTIFLICWAPYHVFGVLILFINPESRVGAAL--LSWDHVSIALASA 417



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>ATF7_MOUSE (Q8R0S1) Cyclic AMP-dependent transcription factor ATF-7|
           (Activating transcription factor 7) (Transcription
           factor ATF-A)
          Length = 413

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = -3

Query: 557 PIFHCNNISGFVEPVVPESQNRALYSTHTFKILFKEGGCGTFVPLFLNLITSVRRHNQF- 381
           P+ +  +IS    P+  E++ R L +T T ++    GGCG  V     ++T+    NQ  
Sbjct: 238 PVNNSGSISPSGHPMPSEAKMR-LKATLTHQVSSINGGCGMVVGTASTMVTARPEQNQIL 296

Query: 380 ----EAQPATVPRVDPMQ 339
               +A     P+V P Q
Sbjct: 297 IQHPDAPSPAQPQVSPAQ 314



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>ZSWM4_MOUSE (Q8C7B8) Zinc finger SWIM domain-containing protein 4|
          Length = 1101

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +1

Query: 391 WRRTDVIRFRKSGTKVPHPPSLNKILKVW------VEYKALFWLSGTTGST 525
           WRR +++R+  S      PP+L  I+K W      VE   +  ++GTT +T
Sbjct: 799 WRRREMVRWLVSCATEIGPPALMSIMKNWYSLFTPVEAVTIVAVTGTTHAT 849


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,665,837
Number of Sequences: 219361
Number of extensions: 2634403
Number of successful extensions: 6936
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6930
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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