Clone Information

BLAST Search Result

Clone Name	rbaal40o17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY596598.1\| Saccharum officinarum clone SCCCCL3001E12, comple...	371	2e-99
2	gb\|AY108813.1\| Zea mays PCO104391 mRNA sequence	299	6e-78
3	dbj\|AK104595.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	274	4e-70
4	dbj\|AK066925.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	274	4e-70
5	dbj\|AK061814.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	274	4e-70
6	gb\|AC137594.2\| Oryza sativa (japonica cultivar-group) chromosome...	123	8e-25
7	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
8	dbj\|AP006756.2\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
9	gb\|AF411807.1\| Lycopersicon esculentum BAC clone Clemson_Id 127E...	56	2e-04
10	emb\|AJ635174.2\| Mangifera indica microsatellite DNA, locus mMiCI...	46	0.15
11	ref\|NM_121206.2\| Arabidopsis thaliana unknown protein AT5G11680 ...	44	0.60
12	ref\|XM_420281.1\| PREDICTED: Gallus gallus similar to Centrin 1 (...	44	0.60
13	gb\|AY117201.1\| Arabidopsis thaliana unknown protein (At5g11680) ...	44	0.60
14	gb\|AY063800.1\| Arabidopsis thaliana unknown protein (At5g11680) ...	44	0.60
15	emb\|AL163814.1\|ATT22P22 Arabidopsis thaliana DNA chromosome 5, B...	44	0.60
16	gb\|AY081610.1\| Arabidopsis thaliana putative protein (At5g11680)...	44	0.60
17	gb\|AY062861.1\| Arabidopsis thaliana putative protein (At5g11680;...	44	0.60
18	dbj\|AK051672.1\| Mus musculus 12 days embryo spinal ganglion cDNA...	44	0.60
19	emb\|BX833959.1\|CNS09Z62 Arabidopsis thaliana Full-length cDNA Co...	44	0.60
20	emb\|BX833543.1\|CNS09Z3S Arabidopsis thaliana Full-length cDNA Co...	44	0.60
21	gb\|AC130404.8\| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Can...	44	0.60
22	gb\|AY088005.1\| Arabidopsis thaliana clone 403 mRNA, complete seq...	44	0.60
23	gb\|AC024913.33\| Mus musculus BAC Clone 402k12 RPCI-23, complete ...	44	0.60
24	gb\|AC025259.49\| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Ca...	42	2.4
25	emb\|AL110485.5\|CEY46G5A Caenorhabditis elegans YAC Y46G5A, compl...	42	2.4
26	gb\|AF102268.1\|AF102268 Pacifastacus leniusculus clotting protein...	42	2.4
27	ref\|XM_470501.1\| Oryza sativa (japonica cultivar-group), mRNA	40	9.4
28	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	9.4
29	gb\|CP000300.1\| Methanococcoides burtonii DSM 6242, complete genome	40	9.4
30	emb\|AL033524.11\|HS1090E8 Human DNA sequence from clone RP5-1090E...	40	9.4
31	gb\|AC092263.7\| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genom...	40	9.4
32	gb\|AC117470.8\| Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cance...	40	9.4
33	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
34	gb\|AC154554.2\| Mus musculus BAC clone RP23-416P6 from chromosome...	40	9.4
35	dbj\|AK203765.1\| Mus musculus cDNA, clone:Y1G0146B17, strand:unsp...	40	9.4
36	dbj\|AB001455.1\| Porphyromonas gingivalis rmlA, rmlC, rmlD, rmlB ...	40	9.4
37	dbj\|AP002062.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	9.4
38	dbj\|AP002033.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	9.4
39	gb\|AY110535.1\| Zea mays CL4982_1 mRNA sequence	40	9.4
40	gb\|AF168792.1\|AF168792 Gallid herpesvirus 1 ICP18.5 gene, partia...	40	9.4
41	gb\|AE015924.1\| Porphyromonas gingivalis W83, complete genome	40	9.4
42	emb\|BX000989.10\| Mouse DNA sequence from clone RP23-33D17 on chr...	40	9.4

>gb|AY596598.1| Saccharum officinarum clone SCCCCL3001E12, complete sequence
          Length = 1052

 Score =  371 bits (187), Expect = 2e-99
 Identities = 408/479 (85%), Gaps = 7/479 (1%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcagcggggccgtggtagtttctcctcctaagctgggattctgctgcaggctgctggagg 268
           ||||| ||||||||||||||||||||||| ||||| |||||||  ||||| ||||| |||
Sbjct: 736 tcagctgggccgtggtagtttctcctcctcagctgcgattctggcgcaggttgctgaagg 677

                                                                       
Query: 269 aagatcttggtaggatcatgtggatcgacatacgcatggcgcatcatgtcgtcaacagg- 327
           || |||||||||||||||| ||| || ||||||||||| ||||||||||| |||||||| 
Sbjct: 676 aaaatcttggtaggatcatttgggtcaacatacgcatgacgcatcatgtcatcaacagga 617

                                                                       
Query: 328 gtttgcgctgcctgcatggggtccacacgggg---cacggtagcagg---ctgggcttca 381
           || ||||| || |||| |||||||||||| ||   || | ||||||    ||||||||||
Sbjct: 616 gtctgcgcagcttgcagggggtccacacgcggtgccatgttagcagcagactgggcttca 557

                                                                       
Query: 382 aactgattgtggcgccgcactgacgtgatcaggttcaggaagagtggcacaaaggtgcca 441
           ||||| |||| ||||||||| || |  | ||||||||||||||| || ||||| || |||
Sbjct: 556 aactggttgtagcgccgcacagaagcaaccaggttcaggaagagaggaacaaaagtacca 497

                                                                       
Query: 442 catccaccttccttgaacaagatcttgaaggtgtgggtggagtacaaagccctgttctgg 501
           || || || |||||||||||||||||||||||||| || |||||||  ||||||||||| 
Sbjct: 496 cagcctccgtccttgaacaagatcttgaaggtgtgagttgagtacagggccctgttctga 437

                                                                       
Query: 502 ctttctggaacaaccggctcaacaaatccagagatattgttgcagtgaaatatcggctgg 561
            | ||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 436 ttgtctggaacaactggttcaacaaatccagagatgttgttgcagtgaaatatgggctga 377

                                                                       
Query: 562 ttgaacttctcaccgtgcacgtacaacagaggcatatcgaaggcaaagaaattcccaata 621
           |||||||||||||| |||||  ||||||| |||||||| || |||||||| || |||| |
Sbjct: 376 ttgaacttctcaccatgcacaaacaacagtggcatatcaaaagcaaagaagttgccaaca 317

                                                                      
Query: 622 ggcttggcggcgacaaacaccatccttatgttagaaaggtatatggtgccctttgtttt 680
           ||||||  ||| ||||||||||||||||| ||||| ||||| || ||||| ||||||||
Sbjct: 316 ggcttgttggcaacaaacaccatccttatattagacaggtaaatcgtgccttttgtttt 258

to top

>gb|AY108813.1| Zea mays PCO104391 mRNA sequence
          Length = 907

 Score =  299 bits (151), Expect = 6e-78
 Identities = 399/479 (83%), Gaps = 7/479 (1%)
 Strand = Plus / Minus

                                                                       
Query: 209 tcagcggggccgtggtagtttctcctcctaagctgggattctgctgcaggctgctggagg 268
           ||||| ||||||||||||||||||||||| ||||| |||||||  ||||| ||||| |||
Sbjct: 673 tcagctgggccgtggtagtttctcctcctcagctgcgattctggggcaggttgctgaagg 614

                                                                       
Query: 269 aagatcttggtaggatcatgtggatcgacatacgcatggcgcatcatgtcgtcaacagg- 327
            | |||||||||||||||| ||| || ||||||||||| |||||||| || || ||||| 
Sbjct: 613 taaatcttggtaggatcatttgggtcaacatacgcatgacgcatcatatcatcgacagga 554

                                                                       
Query: 328 gtttgcgctgcctgcatggggtccacacgggg---cacggtag---caggctgggcttca 381
           || ||||| || ||||  || |||||||| ||   || | |||   ||| ||||||||||
Sbjct: 553 gtctgcgcggcttgcagaggatccacacgcggtgccatgttagcagcagactgggcttca 494

                                                                       
Query: 382 aactgattgtggcgccgcactgacgtgatcaggttcaggaagagtggcacaaaggtgcca 441
           |||| ||||| ||||||||| || |   ||||||| |||||||| || || || || |||
Sbjct: 493 aactcattgtagcgccgcacagatgcagtcaggttaaggaagagaggaacgaaagtacca 434

                                                                       
Query: 442 catccaccttccttgaacaagatcttgaaggtgtgggtggagtacaaagccctgttctgg 501
           || || ||||||||||||||||||||||||||||| || |||||||  ||||||||||| 
Sbjct: 433 cagccgccttccttgaacaagatcttgaaggtgtgagttgagtacagggccctgttctga 374

                                                                       
Query: 502 ctttctggaacaaccggctcaacaaatccagagatattgttgcagtgaaatatcggctgg 561
            | |||||||| || || ||||| ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 373 ttgtctggaacgactggttcaacgaatccagagatgttgttgcagtgaaatatgggctga 314

                                                                       
Query: 562 ttgaacttctcaccgtgcacgtacaacagaggcatatcgaaggcaaagaaattcccaata 621
           |||||||||||||| |||||  ||||||| |||||||| || |||||||| || |||| |
Sbjct: 313 ttgaacttctcaccatgcacaaacaacagtggcatatcaaaagcaaagaagttgccaaca 254

                                                                      
Query: 622 ggcttggcggcgacaaacaccatccttatgttagaaaggtatatggtgccctttgtttt 680
           ||||||  ||| ||||||||||||||||| || || ||||| || ||||| ||||||||
Sbjct: 253 ggcttgctggcaacaaacaccatccttatattggacaggtaaattgtgccttttgtttt 195

to top

>dbj|AK104595.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D09, full
           insert sequence
          Length = 983

 Score =  274 bits (138), Expect = 4e-70
 Identities = 270/314 (85%)
 Strand = Plus / Minus

                                                                       
Query: 367 gcaggctgggcttcaaactgattgtggcgccgcactgacgtgatcaggttcaggaagagt 426
           |||| |||||| ||||||||||||| ||| ||||| || |  | |||||| |||||||| 
Sbjct: 509 gcagactgggcctcaaactgattgtagcgtcgcacagatgcaaccaggtttaggaagaga 450

                                                                       
Query: 427 ggcacaaaggtgccacatccaccttccttgaacaagatcttgaaggtgtgggtggagtac 486
           || |||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 449 ggaacaaaggtaccacagccaccctccttgaacaagatcttgaaagtgtgggtcgagtac 390

                                                                       
Query: 487 aaagccctgttctggctttctggaacaaccggctcaacaaatccagagatattgttgcag 546
           |  |||||||||||| | ||||| |||||||||||||| || || || || |||||||||
Sbjct: 389 agggccctgttctggttctctggtacaaccggctcaacgaaacccgatatgttgttgcag 330

                                                                       
Query: 547 tgaaatatcggctggttgaacttctcaccgtgcacgtacaacagaggcatatcgaaggca 606
           |||||||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||
Sbjct: 329 tgaaatattggctgattgaatttctcaccatgcacatacaacaggggcatatcaaaagca 270

                                                                       
Query: 607 aagaaattcccaataggcttggcggcgacaaacaccatccttatgttagaaaggtatatg 666
           ||||| ||||||| |||||||  ||||||||| |||||||||||||| || ||||| || 
Sbjct: 269 aagaagttcccaacaggcttgctggcgacaaagaccatccttatgtttgacaggtaaatt 210

                         
Query: 667 gtgccctttgtttt 680
           ||||||||||||||
Sbjct: 209 gtgccctttgtttt 196



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                       
Query: 218 ccgtggtagtttctcctcctaagctgggattctgctgcaggctgctggaggaagatcttg 277
           |||||||||||||||||||| ||||| || ||||  ||||||||||| ||||| ||||| 
Sbjct: 665 ccgtggtagtttctcctcctcagctgtgactctggcgcaggctgctgaaggaaaatcttt 606

                                                             
Query: 278 gtaggatcatgtggatcgacatacgcatggcgcatcatgtcgtcaacagg 327
           |||||||| |  ||||| ||||||||||| |||||||| || ||||||||
Sbjct: 605 gtaggatcgttcggatcaacatacgcatgacgcatcatatcatcaacagg 556

to top

>dbj|AK066925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092F14, full
            insert sequence
          Length = 1626

 Score =  274 bits (138), Expect = 4e-70
 Identities = 270/314 (85%)
 Strand = Plus / Minus

                                                                        
Query: 367  gcaggctgggcttcaaactgattgtggcgccgcactgacgtgatcaggttcaggaagagt 426
            |||| |||||| ||||||||||||| ||| ||||| || |  | |||||| |||||||| 
Sbjct: 1247 gcagactgggcctcaaactgattgtagcgtcgcacagatgcaaccaggtttaggaagaga 1188

                                                                        
Query: 427  ggcacaaaggtgccacatccaccttccttgaacaagatcttgaaggtgtgggtggagtac 486
            || |||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1187 ggaacaaaggtaccacagccaccctccttgaacaagatcttgaaagtgtgggtcgagtac 1128

                                                                        
Query: 487  aaagccctgttctggctttctggaacaaccggctcaacaaatccagagatattgttgcag 546
            |  |||||||||||| | ||||| |||||||||||||| || || || || |||||||||
Sbjct: 1127 agggccctgttctggttctctggtacaaccggctcaacgaaacccgatatgttgttgcag 1068

                                                                        
Query: 547  tgaaatatcggctggttgaacttctcaccgtgcacgtacaacagaggcatatcgaaggca 606
            |||||||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||
Sbjct: 1067 tgaaatattggctgattgaatttctcaccatgcacatacaacaggggcatatcaaaagca 1008

                                                                        
Query: 607  aagaaattcccaataggcttggcggcgacaaacaccatccttatgttagaaaggtatatg 666
            ||||| ||||||| |||||||  ||||||||| |||||||||||||| || ||||| || 
Sbjct: 1007 aagaagttcccaacaggcttgctggcgacaaagaccatccttatgtttgacaggtaaatt 948

                          
Query: 667  gtgccctttgtttt 680
            ||||||||||||||
Sbjct: 947  gtgccctttgtttt 934



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                        
Query: 218  ccgtggtagtttctcctcctaagctgggattctgctgcaggctgctggaggaagatcttg 277
            |||||||||||||||||||| ||||| || ||||  ||||||||||| ||||| ||||| 
Sbjct: 1403 ccgtggtagtttctcctcctcagctgtgactctggcgcaggctgctgaaggaaaatcttt 1344

                                                              
Query: 278  gtaggatcatgtggatcgacatacgcatggcgcatcatgtcgtcaacagg 327
            |||||||| |  ||||| ||||||||||| |||||||| || ||||||||
Sbjct: 1343 gtaggatcgttcggatcaacatacgcatgacgcatcatatcatcaacagg 1294

to top

>dbj|AK061814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B04, full
           insert sequence
          Length = 989

 Score =  274 bits (138), Expect = 4e-70
 Identities = 270/314 (85%)
 Strand = Plus / Minus

                                                                       
Query: 367 gcaggctgggcttcaaactgattgtggcgccgcactgacgtgatcaggttcaggaagagt 426
           |||| |||||| ||||||||||||| ||| ||||| || |  | |||||| |||||||| 
Sbjct: 549 gcagactgggcctcaaactgattgtagcgtcgcacagatgcaaccaggtttaggaagaga 490

                                                                       
Query: 427 ggcacaaaggtgccacatccaccttccttgaacaagatcttgaaggtgtgggtggagtac 486
           || |||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 489 ggaacaaaggtaccacagccaccctccttgaacaagatcttgaaagtgtgggtcgagtac 430

                                                                       
Query: 487 aaagccctgttctggctttctggaacaaccggctcaacaaatccagagatattgttgcag 546
           |  |||||||||||| | ||||| |||||||||||||| || || || || |||||||||
Sbjct: 429 agggccctgttctggttctctggtacaaccggctcaacgaaacccgatatgttgttgcag 370

                                                                       
Query: 547 tgaaatatcggctggttgaacttctcaccgtgcacgtacaacagaggcatatcgaaggca 606
           |||||||| ||||| ||||| |||||||| ||||| |||||||| |||||||| || |||
Sbjct: 369 tgaaatattggctgattgaatttctcaccatgcacatacaacaggggcatatcaaaagca 310

                                                                       
Query: 607 aagaaattcccaataggcttggcggcgacaaacaccatccttatgttagaaaggtatatg 666
           ||||| ||||||| |||||||  ||||||||| |||||||||||||| || ||||| || 
Sbjct: 309 aagaagttcccaacaggcttgctggcgacaaagaccatccttatgtttgacaggtaaatt 250

                         
Query: 667 gtgccctttgtttt 680
           ||||||||||||||
Sbjct: 249 gtgccctttgtttt 236



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                       
Query: 218 ccgtggtagtttctcctcctaagctgggattctgctgcaggctgctggaggaagatcttg 277
           |||||||||||||||||||| ||||| || ||||  ||||||||||| ||||| ||||| 
Sbjct: 705 ccgtggtagtttctcctcctcagctgtgactctggcgcaggctgctgaaggaaaatcttt 646

                                                             
Query: 278 gtaggatcatgtggatcgacatacgcatggcgcatcatgtcgtcaacagg 327
           |||||||| |  ||||| ||||||||||| |||||||| || ||||||||
Sbjct: 645 gtaggatcgttcggatcaacatacgcatgacgcatcatatcatcaacagg 596

to top

>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0065A15, complete sequence
          Length = 168806

 Score =  123 bits (62), Expect = 8e-25
 Identities = 128/150 (85%)
 Strand = Plus / Minus

                                                                          
Query: 367    gcaggctgggcttcaaactgattgtggcgccgcactgacgtgatcaggttcaggaagagt 426
              |||| |||||| ||||||||||||| ||| ||||| || |  | |||||| |||||||| 
Sbjct: 145187 gcagactgggcctcaaactgattgtagcgtcgcacagatgcaaccaggtttaggaagaga 145128

                                                                          
Query: 427    ggcacaaaggtgccacatccaccttccttgaacaagatcttgaaggtgtgggtggagtac 486
              || |||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 145127 ggaacaaaggtaccacagccaccctccttgaacaagatcttgaaagtgtgggtcgagtac 145068

                                            
Query: 487    aaagccctgttctggctttctggaacaacc 516
              |  |||||||||||| | ||||| ||||||
Sbjct: 145067 agggccctgttctggttctctggtacaacc 145038



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                          
Query: 592    ggcatatcgaaggcaaagaaattcccaataggcttggcggcgacaaacaccatccttatg 651
              |||||||| || |||||||| ||||||| |||||||  ||||||||| ||||||||||||
Sbjct: 144753 ggcatatcaaaagcaaagaagttcccaacaggcttgctggcgacaaagaccatccttatg 144694

                                           
Query: 652    ttagaaaggtatatggtgccctttgtttt 680
              || || ||||| || ||||||||||||||
Sbjct: 144693 tttgacaggtaaattgtgccctttgtttt 144665



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                          
Query: 218    ccgtggtagtttctcctcctaagctgggattctgctgcaggctgctggaggaagatcttg 277
              |||||||||||||||||||| ||||| || ||||  ||||||||||| ||||| ||||| 
Sbjct: 145430 ccgtggtagtttctcctcctcagctgtgactctggcgcaggctgctgaaggaaaatcttt 145371

                      
Query: 278    gtaggatc 285
              ||||||||
Sbjct: 145370 gtaggatc 145363



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                          
Query: 514    accggctcaacaaatccagagatattgttgcagtgaaatatcggctggttgaacttctca 573
              ||||||||||| || || || || ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 144956 accggctcaacgaaacccgatatgttgttgcagtgaaatattggctgattgaatttctca 144897

                             
Query: 574    ccgtgcacgtacaac 588
              || ||||| ||||||
Sbjct: 144896 ccatgcacatacaac 144882

to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  123 bits (62), Expect = 8e-25
 Identities = 128/150 (85%)
 Strand = Plus / Minus

                                                                            
Query: 367      gcaggctgggcttcaaactgattgtggcgccgcactgacgtgatcaggttcaggaagagt 426
                |||| |||||| ||||||||||||| ||| ||||| || |  | |||||| |||||||| 
Sbjct: 19662112 gcagactgggcctcaaactgattgtagcgtcgcacagatgcaaccaggtttaggaagaga 19662053

                                                                            
Query: 427      ggcacaaaggtgccacatccaccttccttgaacaagatcttgaaggtgtgggtggagtac 486
                || |||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 19662052 ggaacaaaggtaccacagccaccctccttgaacaagatcttgaaagtgtgggtcgagtac 19661993

                                              
Query: 487      aaagccctgttctggctttctggaacaacc 516
                |  |||||||||||| | ||||| ||||||
Sbjct: 19661992 agggccctgttctggttctctggtacaacc 19661963



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 592      ggcatatcgaaggcaaagaaattcccaataggcttggcggcgacaaacaccatccttatg 651
                |||||||| || |||||||| ||||||| |||||||  ||||||||| ||||||||||||
Sbjct: 19661678 ggcatatcaaaagcaaagaagttcccaacaggcttgctggcgacaaagaccatccttatg 19661619

                                             
Query: 652      ttagaaaggtatatggtgccctttgtttt 680
                || || ||||| || ||||||||||||||
Sbjct: 19661618 tttgacaggtaaattgtgccctttgtttt 19661590



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                            
Query: 218      ccgtggtagtttctcctcctaagctgggattctgctgcaggctgctggaggaagatcttg 277
                |||||||||||||||||||| ||||| || ||||  ||||||||||| ||||| ||||| 
Sbjct: 19662355 ccgtggtagtttctcctcctcagctgtgactctggcgcaggctgctgaaggaaaatcttt 19662296

                        
Query: 278      gtaggatc 285
                ||||||||
Sbjct: 19662295 gtaggatc 19662288



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                            
Query: 514      accggctcaacaaatccagagatattgttgcagtgaaatatcggctggttgaacttctca 573
                ||||||||||| || || || || ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 19661881 accggctcaacgaaacccgatatgttgttgcagtgaaatattggctgattgaatttctca 19661822

                               
Query: 574      ccgtgcacgtacaac 588
                || ||||| ||||||
Sbjct: 19661821 ccatgcacatacaac 19661807

to top

>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0450E05
          Length = 176553

 Score =  123 bits (62), Expect = 8e-25
 Identities = 128/150 (85%)
 Strand = Plus / Minus

                                                                        
Query: 367  gcaggctgggcttcaaactgattgtggcgccgcactgacgtgatcaggttcaggaagagt 426
            |||| |||||| ||||||||||||| ||| ||||| || |  | |||||| |||||||| 
Sbjct: 7798 gcagactgggcctcaaactgattgtagcgtcgcacagatgcaaccaggtttaggaagaga 7739

                                                                        
Query: 427  ggcacaaaggtgccacatccaccttccttgaacaagatcttgaaggtgtgggtggagtac 486
            || |||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 7738 ggaacaaaggtaccacagccaccctccttgaacaagatcttgaaagtgtgggtcgagtac 7679

                                          
Query: 487  aaagccctgttctggctttctggaacaacc 516
            |  |||||||||||| | ||||| ||||||
Sbjct: 7678 agggccctgttctggttctctggtacaacc 7649



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                        
Query: 592  ggcatatcgaaggcaaagaaattcccaataggcttggcggcgacaaacaccatccttatg 651
            |||||||| || |||||||| ||||||| |||||||  ||||||||| ||||||||||||
Sbjct: 7364 ggcatatcaaaagcaaagaagttcccaacaggcttgctggcgacaaagaccatccttatg 7305

                                         
Query: 652  ttagaaaggtatatggtgccctttgtttt 680
            || || ||||| || ||||||||||||||
Sbjct: 7304 tttgacaggtaaattgtgccctttgtttt 7276



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 218  ccgtggtagtttctcctcctaagctgggattctgctgcaggctgctggaggaagatcttg 277
            |||||||||||||||||||| ||||| || ||||  ||||||||||| ||||| ||||| 
Sbjct: 8041 ccgtggtagtttctcctcctcagctgtgactctggcgcaggctgctgaaggaaaatcttt 7982

                    
Query: 278  gtaggatc 285
            ||||||||
Sbjct: 7981 gtaggatc 7974



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 514  accggctcaacaaatccagagatattgttgcagtgaaatatcggctggttgaacttctca 573
            ||||||||||| || || || || ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 7567 accggctcaacgaaacccgatatgttgttgcagtgaaatattggctgattgaatttctca 7508

                           
Query: 574  ccgtgcacgtacaac 588
            || ||||| ||||||
Sbjct: 7507 ccatgcacatacaac 7493

to top

>gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence
          Length = 95845

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                         
Query: 426   tggcacaaaggtgccacatccaccttccttgaacaagatcttgaaggtgtgggtggagta 485
             |||||| || || ||||| ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 86362 tggcacgaaagtcccacaaccaccatccttgaacaaaatcttgaatgtatgtgtggagta 86303

                         
Query: 486   caaagccctgtt 497
             ||| || |||||
Sbjct: 86302 caaggcactgtt 86291



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 514   accggctcaacaaatccagagatattgttgcagtgaaata 553
             ||||| || |||||||||||||| ||||||||||| ||||
Sbjct: 85927 accggatctacaaatccagagatgttgttgcagtggaata 85888

to top

>emb|AJ635174.2| Mangifera indica microsatellite DNA, locus mMiCIR012
          Length = 645

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 529 ccagagatattgttgcagtgaaatatcggctggttgaacttctcacc 575
           ||||| ||||||||||| |||||||  |||||||| || ||||||||
Sbjct: 583 ccagaaatattgttgcaatgaaatactggctggttaaatttctcacc 537

to top

>ref|NM_121206.2| Arabidopsis thaliana unknown protein AT5G11680 mRNA, complete cds
          Length = 1035

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 535 atattgttgcagtgaaatatcggctg 560
           |||||||||||||||||||| |||||
Sbjct: 473 atattgttgcagtgaaatattggctg 448



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 415 ttcaggaagagtggcacaaaggtgccacatccaccttccttgaacaagatcttgaa 470
           |||| |||||| || ||||| || ||||| ||||||||||| || | |||||||||
Sbjct: 593 ttcaagaagagaggaacaaatgtcccacaaccaccttccttaaataggatcttgaa 538

to top

>ref|XM_420281.1| PREDICTED: Gallus gallus similar to Centrin 1 (Caltractin isoform
           2) (LOC422304), mRNA
          Length = 653

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 247 ttctgctgcaggctgctggagg 268
           ||||||||||||||||||||||
Sbjct: 74  ttctgctgcaggctgctggagg 95

to top

>gb|AY117201.1| Arabidopsis thaliana unknown protein (At5g11680) mRNA, complete cds
          Length = 631

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 535 atattgttgcagtgaaatatcggctg 560
           |||||||||||||||||||| |||||
Sbjct: 275 atattgttgcagtgaaatattggctg 250



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 415 ttcaggaagagtggcacaaaggtgccacatccaccttccttgaacaagatcttgaa 470
           |||| |||||| || ||||| || ||||| ||||||||||| || | |||||||||
Sbjct: 395 ttcaagaagagaggaacaaatgtcccacaaccaccttccttaaataggatcttgaa 340

to top

>gb|AY063800.1| Arabidopsis thaliana unknown protein (At5g11680) mRNA, complete cds
          Length = 845

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 535 atattgttgcagtgaaatatcggctg 560
           |||||||||||||||||||| |||||
Sbjct: 473 atattgttgcagtgaaatattggctg 448



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 415 ttcaggaagagtggcacaaaggtgccacatccaccttccttgaacaagatcttgaa 470
           |||| |||||| || ||||| || ||||| ||||||||||| || | |||||||||
Sbjct: 593 ttcaagaagagaggaacaaatgtcccacaaccaccttccttaaataggatcttgaa 538

to top

>emb|AL163814.1|ATT22P22 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project)
          Length = 93205

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 535   atattgttgcagtgaaatatcggctg 560
             |||||||||||||||||||| |||||
Sbjct: 39079 atattgttgcagtgaaatattggctg 39054



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 415   ttcaggaagagtggcacaaaggtgccacatccaccttccttgaacaagatcttgaa 470
             |||| |||||| || ||||| || ||||| ||||||||||| || | |||||||||
Sbjct: 39290 ttcaagaagagaggaacaaatgtcccacaaccaccttccttaaataggatcttgaa 39235

to top

>gb|AY081610.1| Arabidopsis thaliana putative protein (At5g11680) mRNA, complete
           cds
          Length = 783

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 535 atattgttgcagtgaaatatcggctg 560
           |||||||||||||||||||| |||||
Sbjct: 275 atattgttgcagtgaaatattggctg 250



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 415 ttcaggaagagtggcacaaaggtgccacatccaccttccttgaacaagatcttgaa 470
           |||| |||||| || ||||| || ||||| ||||||||||| || | |||||||||
Sbjct: 395 ttcaagaagagaggaacaaatgtcccacaaccaccttccttaaataggatcttgaa 340

to top

>gb|AY062861.1| Arabidopsis thaliana putative protein (At5g11680; T22P22_70) mRNA,
           complete cds
          Length = 1015

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 535 atattgttgcagtgaaatatcggctg 560
           |||||||||||||||||||| |||||
Sbjct: 462 atattgttgcagtgaaatattggctg 437



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 415 ttcaggaagagtggcacaaaggtgccacatccaccttccttgaacaagatcttgaa 470
           |||| |||||| || ||||| || ||||| ||||||||||| || | |||||||||
Sbjct: 582 ttcaagaagagaggaacaaatgtcccacaaccaccttccttaaataggatcttgaa 527

to top

>dbj|AK051672.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130063P19
            product:unclassifiable, full insert sequence
          Length = 2167

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 6    tatgtacattattaccagatct 27
            ||||||||||||||||||||||
Sbjct: 1935 tatgtacattattaccagatct 1956

to top

>emb|BX833959.1|CNS09Z62 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL86ZD02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 972

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 535 atattgttgcagtgaaatatcggctg 560
           |||||||||||||||||||| |||||
Sbjct: 406 atattgttgcagtgaaatattggctg 381



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 415 ttcaggaagagtggcacaaaggtgccacatccaccttccttgaacaagatcttgaa 470
           |||| |||||| || ||||| || ||||| ||||||||||| || | |||||||||
Sbjct: 526 ttcaagaagagaggaacaaatgtcccacaaccaccttccttaaataggatcttgaa 471

to top

>emb|BX833543.1|CNS09Z3S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL61ZD03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 901

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 535 atattgttgcagtgaaatatcggctg 560
           |||||||||||||||||||| |||||
Sbjct: 348 atattgttgcagtgaaatattggctg 323

to top

>gb|AC130404.8| Homo sapiens 12 BAC RP11-337L12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 135653

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 452   ccttgaacaagatcttgaaggt 473
             ||||||||||||||||||||||
Sbjct: 85990 ccttgaacaagatcttgaaggt 86011

to top

>gb|AY088005.1| Arabidopsis thaliana clone 403 mRNA, complete sequence
          Length = 1001

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 535 atattgttgcagtgaaatatcggctg 560
           |||||||||||||||||||| |||||
Sbjct: 442 atattgttgcagtgaaatattggctg 417



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 415 ttcaggaagagtggcacaaaggtgccacatccaccttccttgaacaagatcttgaa 470
           |||| |||||| || ||||| || ||||| ||||||||||| || | |||||||||
Sbjct: 562 ttcaagaagagaggaacaaatgtcccacaaccaccttccttaaataggatcttgaa 507

to top

>gb|AC024913.33| Mus musculus BAC Clone 402k12 RPCI-23, complete sequence
          Length = 197831

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 6      tatgtacattattaccagatct 27
              ||||||||||||||||||||||
Sbjct: 165974 tatgtacattattaccagatct 165953

to top

>gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 212622

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   ggattctgctgcaggctgctg 264
             |||||||||||||||||||||
Sbjct: 38428 ggattctgctgcaggctgctg 38408

to top

>emb|AL110485.5|CEY46G5A Caenorhabditis elegans YAC Y46G5A, complete sequence
          Length = 197908

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      tttgtatgtacattattacca 22
              |||||||||||||||||||||
Sbjct: 143357 tttgtatgtacattattacca 143377

to top

>gb|AF102268.1|AF102268 Pacifastacus leniusculus clotting protein precursor, mRNA, complete
            cds
          Length = 6396

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 92   ttcttcactgagaatcaccagaatg 116
            |||||||||||||||| ||||||||
Sbjct: 2804 ttcttcactgagaatcgccagaatg 2780

to top

>ref|XM_470501.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1859

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 610  aaattcccaataggcttggc 629
            ||||||||||||||||||||
Sbjct: 1797 aaattcccaataggcttggc 1778

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 610      aaattcccaataggcttggc 629
                ||||||||||||||||||||
Sbjct: 35961733 aaattcccaataggcttggc 35961752

to top

>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 439     ccacatccaccttccttgaa 458
               ||||||||||||||||||||
Sbjct: 1576248 ccacatccaccttccttgaa 1576267

to top

>emb|AL033524.11|HS1090E8 Human DNA sequence from clone RP5-1090E8 on chromosome 1p34.1-34.3
             Contains the 5' end of a novel gene, complete sequence
          Length = 101728

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   cctgcatggggtccacacgg 357
             ||||||||||||||||||||
Sbjct: 99254 cctgcatggggtccacacgg 99235

to top

>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
             sequence
          Length = 164179

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 610   aaattcccaataggcttggc 629
             ||||||||||||||||||||
Sbjct: 23244 aaattcccaataggcttggc 23263

to top

>gb|AC117470.8| Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 190630

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 645   ccttatgttagaaaggtatatggt 668
             |||||||| |||||||||||||||
Sbjct: 72229 ccttatgtaagaaaggtatatggt 72206

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 610      aaattcccaataggcttggc 629
                ||||||||||||||||||||
Sbjct: 36051807 aaattcccaataggcttggc 36051826

to top

>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence
          Length = 204294

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   aaaacacatgcacttcccaa 182
             ||||||||||||||||||||
Sbjct: 50261 aaaacacatgcacttcccaa 50242

to top

>dbj|AK203765.1| Mus musculus cDNA, clone:Y1G0146B17, strand:unspecified
          Length = 364

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 605 caaagaaattcccaataggc 624
           ||||||||||||||||||||
Sbjct: 283 caaagaaattcccaataggc 302

to top

>dbj|AB001455.1| Porphyromonas gingivalis rmlA, rmlC, rmlD, rmlB genes for
           glucose-1-phosphate thymidylyltransferase,
           dTDP-4-dehydrorhamnose 3,5-epimerase,
           dTDP-4-dehydrorhamnose reductase, dTDP-glucose
           4,6-dehydratase, complete cds
          Length = 5361

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 492 cctgttctggctttctggaacaac 515
           ||||||||||||||| ||||||||
Sbjct: 809 cctgttctggctttcgggaacaac 832

to top

>dbj|AP002062.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T22B15
          Length = 112406

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 532   gagatattgttgcagtgaaa 551
             ||||||||||||||||||||
Sbjct: 85591 gagatattgttgcagtgaaa 85610

to top

>dbj|AP002033.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F1M23
          Length = 112684

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 532   gagatattgttgcagtgaaa 551
             ||||||||||||||||||||
Sbjct: 57687 gagatattgttgcagtgaaa 57706

to top

>gb|AY110535.1| Zea mays CL4982_1 mRNA sequence
          Length = 768

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 31  ctgaatccacagcgagacacacaa 54
           ||||||||||||| ||||||||||
Sbjct: 351 ctgaatccacagccagacacacaa 328

to top

>gb|AF168792.1|AF168792 Gallid herpesvirus 1 ICP18.5 gene, partial cds; DNA binding
           protein, DNA polymerase, UL31 homolog, UL32 homolog,
           UL33 homolog, UL34 homolog, UL35 homolog, very large
           tegument protein, UL37 homolog, capsid assembly protein,
           ribonucleotide reductase large subunit, ribonucleotide
           reductase small subunit, virion host shutoff (VHS), and
           UL42 homolog genes, complete cds; and UL43 homolog gene,
           partial cds
          Length = 31424

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 527 atccagagatattgttgcag 546
           ||||||||||||||||||||
Sbjct: 664 atccagagatattgttgcag 645

to top

>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 492     cctgttctggctttctggaacaac 515
               ||||||||||||||| ||||||||
Sbjct: 1642952 cctgttctggctttcgggaacaac 1642929

to top

>emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chromosome 4, complete
              sequence
          Length = 236166

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ttctgctgcaggctgctgga 266
              ||||||||||||||||||||
Sbjct: 213010 ttctgctgcaggctgctgga 213029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,634,363
Number of Sequences: 3902068
Number of extensions: 5634363
Number of successful extensions: 96187
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96053
Number of HSP's gapped (non-prelim): 132
length of query: 688
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 665
effective length of database: 17,143,297,704
effective search space: 11400292973160
effective search space used: 11400292973160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result