| Clone Name | rbaal41d07 |
|---|---|
| Clone Library Name | barley_pub |
>YC20L_ARATH (O80813) Ycf20-like protein| Length = 121 Score = 53.5 bits (127), Expect = 2e-07 Identities = 23/27 (85%), Positives = 25/27 (92%) Frame = -3 Query: 413 QSFISMVNFWKAGVCLGLFVDAFKLGS 333 QSF+ +NFWKAGVCLGLFVDAFKLGS Sbjct: 95 QSFVVFMNFWKAGVCLGLFVDAFKLGS 121
>YCF20_MESVI (Q9MUL5) Hypothetical 13.0 kDa protein ycf20 (RF20)| Length = 116 Score = 35.0 bits (79), Expect = 0.070 Identities = 17/28 (60%), Positives = 22/28 (78%), Gaps = 2/28 (7%) Frame = -3 Query: 410 SFISMV--NFWKAGVCLGLFVDAFKLGS 333 SF+S++ N+ K G+ GLFVDAFKLGS Sbjct: 89 SFLSLIGINYIKIGLIFGLFVDAFKLGS 116
>YCF20_PORPU (P51214) Hypothetical 11.9 kDa protein ycf20 (ORF108)| Length = 108 Score = 33.5 bits (75), Expect = 0.20 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = -3 Query: 404 ISMVNFWKAGVCLGLFVDAFKLGS 333 I+++N K G+ GLFVDAFKLGS Sbjct: 85 INLLNNLKIGITYGLFVDAFKLGS 108
>YCF20_CYACA (Q9MVP1) Hypothetical 11.5 kDa protein ycf20| Length = 101 Score = 31.2 bits (69), Expect = 1.0 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -3 Query: 395 VNFWKAGVCLGLFVDAFKLGS 333 +N K G+ GLF+DAFKLGS Sbjct: 81 INLAKLGLLYGLFIDAFKLGS 101
>YCF20_AGLNE (P34813) Hypothetical 11.4 kDa protein ycf20| Length = 100 Score = 30.8 bits (68), Expect = 1.3 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -3 Query: 404 ISMVNFWKAGVCLGLFVDAFKLGS 333 + +N K G+ GLFVD+FKLGS Sbjct: 77 VKTINGIKIGIIYGLFVDSFKLGS 100
>YCF20_GALSU (P48409) Hypothetical 9.5 kDa protein ycf20| Length = 83 Score = 30.4 bits (67), Expect = 1.7 Identities = 13/27 (48%), Positives = 20/27 (74%) Frame = -3 Query: 413 QSFISMVNFWKAGVCLGLFVDAFKLGS 333 ++ I+ N +K G+ GL++DAFKLGS Sbjct: 57 KNIINCFNGFKIGLIYGLYLDAFKLGS 83
>NACH_DROAN (O61370) Sodium channel protein Nach| Length = 516 Score = 30.0 bits (66), Expect = 2.3 Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 16/109 (14%) Frame = +3 Query: 129 TLIQHLDEPGRNRSPISYLCKHLGQLQDQ----NLIHEGMPICCAKSLRYDGLN------ 278 TL Q ++ N I Y C+ GQ++D L CC+ +LR GLN Sbjct: 167 TLQQLVEHLRWNCDEILYRCRFNGQIRDCLELFQLSKTFFGHCCSFNLRQTGLNFTAERA 226 Query: 279 ------GSVAILIGKQDKVNPGNSASQLEGIHKKAQTYTSFPEVHH*NK 407 G IL K D +P S S G+ Q +FP H +K Sbjct: 227 VGGLKYGLSVILRYKDDSYDPVQSYS--FGVKLLIQESDAFPSAHSSSK 273
>YC20L_SYNY3 (P72983) Ycf20-like protein| Length = 109 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = -3 Query: 398 MVNFWKAGVCLGLFVDAFKLGS 333 ++N +K GV LF++AFKLGS Sbjct: 88 VLNIFKMGVSYSLFLEAFKLGS 109
>MURG_THEFY (Q47QW9) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 379 Score = 28.9 bits (63), Expect = 5.0 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +3 Query: 105 PRVHHPRRTLIQHLDEPGRNRSPISYLCKHLGQLQDQNLIHEG 233 P V PR+ Q L PGR + IS KHL ++Q L+ G Sbjct: 58 PAVPLPRKLTPQLLSVPGRLANAISTAAKHLDRVQADILVGFG 100
>TAH18_USTMA (Q4P3D8) Probable NADPH reductase TAH18 (EC 1.-.-.-)| Length = 616 Score = 28.9 bits (63), Expect = 5.0 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 9/57 (15%) Frame = +3 Query: 42 QEKLDNHMYIFGPDEVCYQSSPR---------VHHPRRTLIQHLDEPGRNRSPISYL 185 +EKLD + IF +E+ ++P+ PRRT+ + LDE + P++Y+ Sbjct: 322 REKLDEYCGIFPEEELAKGANPQDGIDEMYEYAQRPRRTIKEVLDEFKSVQVPLAYI 378 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,941,212 Number of Sequences: 219361 Number of extensions: 1236692 Number of successful extensions: 2788 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2787 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)