ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YC20L_ARATH (O80813) Ycf20-like protein 54 2e-07
2YCF20_MESVI (Q9MUL5) Hypothetical 13.0 kDa protein ycf20 (RF20) 35 0.070
3YCF20_PORPU (P51214) Hypothetical 11.9 kDa protein ycf20 (ORF108) 33 0.20
4YCF20_CYACA (Q9MVP1) Hypothetical 11.5 kDa protein ycf20 31 1.0
5YCF20_AGLNE (P34813) Hypothetical 11.4 kDa protein ycf20 31 1.3
6YCF20_GALSU (P48409) Hypothetical 9.5 kDa protein ycf20 30 1.7
7NACH_DROAN (O61370) Sodium channel protein Nach 30 2.3
8YC20L_SYNY3 (P72983) Ycf20-like protein 29 5.0
9MURG_THEFY (Q47QW9) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 29 5.0
10TAH18_USTMA (Q4P3D8) Probable NADPH reductase TAH18 (EC 1.-.-.-) 29 5.0

>YC20L_ARATH (O80813) Ycf20-like protein|
          Length = 121

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = -3

Query: 413 QSFISMVNFWKAGVCLGLFVDAFKLGS 333
           QSF+  +NFWKAGVCLGLFVDAFKLGS
Sbjct: 95  QSFVVFMNFWKAGVCLGLFVDAFKLGS 121



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>YCF20_MESVI (Q9MUL5) Hypothetical 13.0 kDa protein ycf20 (RF20)|
          Length = 116

 Score = 35.0 bits (79), Expect = 0.070
 Identities = 17/28 (60%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
 Frame = -3

Query: 410 SFISMV--NFWKAGVCLGLFVDAFKLGS 333
           SF+S++  N+ K G+  GLFVDAFKLGS
Sbjct: 89  SFLSLIGINYIKIGLIFGLFVDAFKLGS 116



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>YCF20_PORPU (P51214) Hypothetical 11.9 kDa protein ycf20 (ORF108)|
          Length = 108

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -3

Query: 404 ISMVNFWKAGVCLGLFVDAFKLGS 333
           I+++N  K G+  GLFVDAFKLGS
Sbjct: 85  INLLNNLKIGITYGLFVDAFKLGS 108



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>YCF20_CYACA (Q9MVP1) Hypothetical 11.5 kDa protein ycf20|
          Length = 101

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -3

Query: 395 VNFWKAGVCLGLFVDAFKLGS 333
           +N  K G+  GLF+DAFKLGS
Sbjct: 81  INLAKLGLLYGLFIDAFKLGS 101



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>YCF20_AGLNE (P34813) Hypothetical 11.4 kDa protein ycf20|
          Length = 100

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 404 ISMVNFWKAGVCLGLFVDAFKLGS 333
           +  +N  K G+  GLFVD+FKLGS
Sbjct: 77  VKTINGIKIGIIYGLFVDSFKLGS 100



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>YCF20_GALSU (P48409) Hypothetical 9.5 kDa protein ycf20|
          Length = 83

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 413 QSFISMVNFWKAGVCLGLFVDAFKLGS 333
           ++ I+  N +K G+  GL++DAFKLGS
Sbjct: 57  KNIINCFNGFKIGLIYGLYLDAFKLGS 83



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>NACH_DROAN (O61370) Sodium channel protein Nach|
          Length = 516

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
 Frame = +3

Query: 129 TLIQHLDEPGRNRSPISYLCKHLGQLQDQ----NLIHEGMPICCAKSLRYDGLN------ 278
           TL Q ++    N   I Y C+  GQ++D      L       CC+ +LR  GLN      
Sbjct: 167 TLQQLVEHLRWNCDEILYRCRFNGQIRDCLELFQLSKTFFGHCCSFNLRQTGLNFTAERA 226

Query: 279 ------GSVAILIGKQDKVNPGNSASQLEGIHKKAQTYTSFPEVHH*NK 407
                 G   IL  K D  +P  S S   G+    Q   +FP  H  +K
Sbjct: 227 VGGLKYGLSVILRYKDDSYDPVQSYS--FGVKLLIQESDAFPSAHSSSK 273



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>YC20L_SYNY3 (P72983) Ycf20-like protein|
          Length = 109

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 398 MVNFWKAGVCLGLFVDAFKLGS 333
           ++N +K GV   LF++AFKLGS
Sbjct: 88  VLNIFKMGVSYSLFLEAFKLGS 109



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>MURG_THEFY (Q47QW9) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 379

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 105 PRVHHPRRTLIQHLDEPGRNRSPISYLCKHLGQLQDQNLIHEG 233
           P V  PR+   Q L  PGR  + IS   KHL ++Q   L+  G
Sbjct: 58  PAVPLPRKLTPQLLSVPGRLANAISTAAKHLDRVQADILVGFG 100



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>TAH18_USTMA (Q4P3D8) Probable NADPH reductase TAH18 (EC 1.-.-.-)|
          Length = 616

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
 Frame = +3

Query: 42  QEKLDNHMYIFGPDEVCYQSSPR---------VHHPRRTLIQHLDEPGRNRSPISYL 185
           +EKLD +  IF  +E+   ++P+            PRRT+ + LDE    + P++Y+
Sbjct: 322 REKLDEYCGIFPEEELAKGANPQDGIDEMYEYAQRPRRTIKEVLDEFKSVQVPLAYI 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,941,212
Number of Sequences: 219361
Number of extensions: 1236692
Number of successful extensions: 2788
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2787
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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