ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
2dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
3gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H0... 84 4e-13
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
5dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
6dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
7dbj|AK059944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
8ref|XM_524999.1| PREDICTED: Pan troglodytes LOC469616 (LOC469616... 42 1.4
9gb|AY151286.1| Homo sapiens cyclooxygenase 2b mRNA, complete cds... 42 1.4
10gb|AY382629.1| Homo sapiens prostaglandin-endoperoxide synthase ... 42 1.4
11emb|AL390375.11| Human DNA sequence from clone RP11-505I19 on ch... 42 1.4
12emb|AL033533.5|HS973M2 Human DNA sequence from clone RP5-973M2 o... 42 1.4
13gb|AC073342.3| Homo sapiens BAC clone RP11-556I13 from 7, comple... 42 1.4
14gb|AY229989.1| Homo sapiens prostaglandin-endoperoxide synthase ... 42 1.4
15gb|U04636.1|HSU04636 Human cyclooxygenase-2 (hCox-2) gene, compl... 42 1.4
16dbj|D28235.1|HUMPTGS2 Human PTGS2 gene for prostaglandin endoper... 42 1.4
17gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, comp... 40 5.6
18gb|AC150515.3| Bos taurus BAC CH240-118E9 (Children's Hospital ... 40 5.6
19gb|AC123711.14| Mus musculus chromosome 3, clone RP23-378N16, co... 40 5.6
20emb|AL592171.8| Human DNA sequence from clone RP13-213F13 on chr... 40 5.6
21emb|AL160413.7| Human DNA sequence from clone RP5-837G17 on chro... 40 5.6
22emb|AL157779.6| Human DNA sequence from clone RP13-310B24 on chr... 40 5.6
23dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone:... 40 5.6
24gb|AC079910.18| Homo sapiens 3 BAC RP11-418B12 (Roswell Park Can... 40 5.6
25gb|AC104513.8| Homo sapiens 3q BAC RP11-115O24 (Roswell Park Can... 40 5.6
26gb|AC022880.10| Homo sapiens chromosome , clone RP11-436P7, comp... 40 5.6
27gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, co... 40 5.6
28gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, co... 40 5.6
29gb|AC074041.3|AC074041 Mus musculus strain C57BL6/J chromosome 2... 40 5.6
30gb|AC010144.4|AC010144 Homo sapiens BAC clone RP11-309M4 from Y,... 40 5.6
31gb|AC010872.8| Homo sapiens BAC clone RP11-83B6 from 2, complete... 40 5.6
32emb|AL928836.9| Mouse DNA sequence from clone RP23-239M4 on chro... 40 5.6
33emb|AL049875.2|CNS0000O Human chromosome 14 DNA sequence BAC R-1... 40 5.6

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                           
Query: 324     gggaactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagcttt 383
               |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 7566136 gggaactcagcttcccagtttgaaggcatccacaaaaaggcccagacatacgccggcttt 7566195

                                                  
Query: 384     ccagaagttcaccattgaaataaatgactgaaatc 418
               |||| |||||||||||| ||| |||||||| ||||
Sbjct: 7566196 ccagtagttcaccattgcaatcaatgactggaatc 7566230



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>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1705_E12
          Length = 191416

 Score =  133 bits (67), Expect = 5e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 324    gggaactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagcttt 383
              |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 159842 gggaactcagcttcccagtttgaaggcatccacaaaaaggcccagacatacgccggcttt 159901

                                                 
Query: 384    ccagaagttcaccattgaaataaatgactgaaatc 418
              |||| |||||||||||| ||| |||||||| ||||
Sbjct: 159902 ccagtagttcaccattgcaatcaatgactggaatc 159936



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>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence
          Length = 161873

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                         
Query: 327   aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386
             ||||||||||||||  ||||| || |||||||||| |||||||||||| || ||||||||
Sbjct: 43905 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 43846

                           
Query: 387   gaagttcaccattg 400
             | ||||||||||||
Sbjct: 43845 gtagttcaccattg 43832



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                           
Query: 327     aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386
               ||||||||||||||  ||||| || |||||||||| |||||||||||| || ||||||||
Sbjct: 6385755 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 6385814

                             
Query: 387     gaagttcaccattg 400
               | ||||||||||||
Sbjct: 6385815 gtagttcaccattg 6385828



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>dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0453B09
          Length = 173688

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 327   aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386
             ||||||||||||||  ||||| || |||||||||| |||||||||||| || ||||||||
Sbjct: 51832 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 51891

                           
Query: 387   gaagttcaccattg 400
             | ||||||||||||
Sbjct: 51892 gtagttcaccattg 51905



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>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0663H05
          Length = 161938

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                          
Query: 327    aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386
              ||||||||||||||  ||||| || |||||||||| |||||||||||| || ||||||||
Sbjct: 118034 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 118093

                            
Query: 387    gaagttcaccattg 400
              | ||||||||||||
Sbjct: 118094 gtagttcaccattg 118107



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>dbj|AK059944.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G07, full
           insert sequence
          Length = 973

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                       
Query: 327 aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386
           ||||||||||||||  ||||| || |||||||||| |||||||||||| || ||||||||
Sbjct: 670 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 611

                         
Query: 387 gaagttcaccattg 400
           | ||||||||||||
Sbjct: 610 gtagttcaccattg 597



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>ref|XM_524999.1| PREDICTED: Pan troglodytes LOC469616 (LOC469616), mRNA
          Length = 1428

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  aatactgataggtaaacaaga 310
            |||||||||||||||||||||
Sbjct: 1368 aatactgataggtaaacaaga 1388



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>gb|AY151286.1| Homo sapiens cyclooxygenase 2b mRNA, complete cds; alternatively
            spliced
          Length = 3669

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  aatactgataggtaaacaaga 310
            |||||||||||||||||||||
Sbjct: 1057 aatactgataggtaaacaaga 1077



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>gb|AY382629.1| Homo sapiens prostaglandin-endoperoxide synthase 2 (prostaglandin G/H
            synthase and cyclooxygenase) (PTGS2) gene, complete cds
          Length = 12551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  aatactgataggtaaacaaga 310
            |||||||||||||||||||||
Sbjct: 5943 aatactgataggtaaacaaga 5963



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>emb|AL390375.11| Human DNA sequence from clone RP11-505I19 on chromosome 13, complete
             sequence
          Length = 71118

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   gatgaaccaggaagaaataga 167
             |||||||||||||||||||||
Sbjct: 50834 gatgaaccaggaagaaataga 50854



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>emb|AL033533.5|HS973M2 Human DNA sequence from clone RP5-973M2 on chromosome 1q24.3-31.1
             Contains the PTGS2 gene for prostaglandin-endoperoxide
             synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
             and a CpG island, complete sequence
          Length = 84412

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 290   aatactgataggtaaacaaga 310
             |||||||||||||||||||||
Sbjct: 46835 aatactgataggtaaacaaga 46815



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>gb|AC073342.3| Homo sapiens BAC clone RP11-556I13 from 7, complete sequence
          Length = 167869

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 149   tgaaccaggaagaaatagatcacct 173
             ||||||||||||||||||| |||||
Sbjct: 51919 tgaaccaggaagaaatagaacacct 51895



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>gb|AY229989.1| Homo sapiens prostaglandin-endoperoxide synthase 2 (prostaglandin G/H
            synthase and cyclooxygenase) (PTGS2) gene, complete cds
          Length = 11449

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  aatactgataggtaaacaaga 310
            |||||||||||||||||||||
Sbjct: 5833 aatactgataggtaaacaaga 5853



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>gb|U04636.1|HSU04636 Human cyclooxygenase-2 (hCox-2) gene, complete cds
          Length = 9453

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  aatactgataggtaaacaaga 310
            |||||||||||||||||||||
Sbjct: 4779 aatactgataggtaaacaaga 4799



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>dbj|D28235.1|HUMPTGS2 Human PTGS2 gene for prostaglandin endoperoxide synthase-2, complete
            cds
          Length = 10997

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 290  aatactgataggtaaacaaga 310
            |||||||||||||||||||||
Sbjct: 5923 aatactgataggtaaacaaga 5943



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>gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, complete sequence
          Length = 171048

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ggccaactgcaagaccaaaa 217
             ||||||||||||||||||||
Sbjct: 42967 ggccaactgcaagaccaaaa 42986



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>gb|AC150515.3| Bos taurus  BAC CH240-118E9 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 171213

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   atgaaccaggaagaaataga 167
             ||||||||||||||||||||
Sbjct: 86300 atgaaccaggaagaaataga 86319



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>gb|AC123711.14| Mus musculus chromosome 3, clone RP23-378N16, complete sequence
          Length = 209168

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    ggaactcagcttcccagctt 344
              ||||||||||||||||||||
Sbjct: 155663 ggaactcagcttcccagctt 155682



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>emb|AL592171.8| Human DNA sequence from clone RP13-213F13 on chromosome Xq13.2-21.2,
             complete sequence
          Length = 48698

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   tgaaccaggaagaaatagat 168
             ||||||||||||||||||||
Sbjct: 27011 tgaaccaggaagaaatagat 26992



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>emb|AL160413.7| Human DNA sequence from clone RP5-837G17 on chromosome 20 Contains
             ESTs, GSSs and STSs, complete sequence
          Length = 56899

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   atgaaccaggaagaaataga 167
             ||||||||||||||||||||
Sbjct: 34125 atgaaccaggaagaaataga 34106



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>emb|AL157779.6| Human DNA sequence from clone RP13-310B24 on chromosome X, complete
             sequence
          Length = 99632

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   tgaaccaggaagaaatagat 168
             ||||||||||||||||||||
Sbjct: 55329 tgaaccaggaagaaatagat 55348



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>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete
             sequence
          Length = 157870

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   atgaaccaggaagaaataga 167
             ||||||||||||||||||||
Sbjct: 48718 atgaaccaggaagaaataga 48699



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>gb|AC079910.18| Homo sapiens 3 BAC RP11-418B12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    tgaaccaggaagaaatagat 168
              ||||||||||||||||||||
Sbjct: 111666 tgaaccaggaagaaatagat 111647



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>gb|AC104513.8| Homo sapiens 3q BAC RP11-115O24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162500

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    tgaaccaggaagaaatagat 168
              ||||||||||||||||||||
Sbjct: 145654 tgaaccaggaagaaatagat 145673



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>gb|AC022880.10| Homo sapiens chromosome , clone RP11-436P7, complete sequence
          Length = 166306

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   atgaaccaggaagaaataga 167
             ||||||||||||||||||||
Sbjct: 13505 atgaaccaggaagaaataga 13486



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>gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, complete sequence
          Length = 166236

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  atgaaccaggaagaaataga 167
            ||||||||||||||||||||
Sbjct: 1002 atgaaccaggaagaaataga 1021



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>gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, complete sequence
          Length = 146978

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ggccaactgcaagaccaaaa 217
             ||||||||||||||||||||
Sbjct: 29389 ggccaactgcaagaccaaaa 29408



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>gb|AC074041.3|AC074041 Mus musculus strain C57BL6/J chromosome 2 clone RP23-258D16, complete
              sequence
          Length = 170548

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    acctataagctatctctgca 189
              ||||||||||||||||||||
Sbjct: 146249 acctataagctatctctgca 146230



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>gb|AC010144.4|AC010144 Homo sapiens BAC clone RP11-309M4 from Y, complete sequence
          Length = 166347

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    tgaaccaggaagaaatagat 168
              ||||||||||||||||||||
Sbjct: 101498 tgaaccaggaagaaatagat 101517



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>gb|AC010872.8| Homo sapiens BAC clone RP11-83B6 from 2, complete sequence
          Length = 189507

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aagaaatagatcacctataa 177
             ||||||||||||||||||||
Sbjct: 86512 aagaaatagatcacctataa 86493



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>emb|AL928836.9| Mouse DNA sequence from clone RP23-239M4 on chromosome 2, complete
             sequence
          Length = 97325

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   acctataagctatctctgca 189
             ||||||||||||||||||||
Sbjct: 26301 acctataagctatctctgca 26320



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>emb|AL049875.2|CNS0000O Human chromosome 14 DNA sequence BAC R-111A21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163118

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    tgaaccaggaagaaatagat 168
              ||||||||||||||||||||
Sbjct: 113192 tgaaccaggaagaaatagat 113211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,720,257
Number of Sequences: 3902068
Number of extensions: 3720257
Number of successful extensions: 70103
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70010
Number of HSP's gapped (non-prelim): 93
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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