| Clone Name | rbaal41d07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 324 gggaactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagcttt 383 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct: 7566136 gggaactcagcttcccagtttgaaggcatccacaaaaaggcccagacatacgccggcttt 7566195 Query: 384 ccagaagttcaccattgaaataaatgactgaaatc 418 |||| |||||||||||| ||| |||||||| |||| Sbjct: 7566196 ccagtagttcaccattgcaatcaatgactggaatc 7566230
>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1705_E12 Length = 191416 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 324 gggaactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagcttt 383 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct: 159842 gggaactcagcttcccagtttgaaggcatccacaaaaaggcccagacatacgccggcttt 159901 Query: 384 ccagaagttcaccattgaaataaatgactgaaatc 418 |||| |||||||||||| ||| |||||||| |||| Sbjct: 159902 ccagtagttcaccattgcaatcaatgactggaatc 159936
>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence Length = 161873 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 327 aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386 |||||||||||||| ||||| || |||||||||| |||||||||||| || |||||||| Sbjct: 43905 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 43846 Query: 387 gaagttcaccattg 400 | |||||||||||| Sbjct: 43845 gtagttcaccattg 43832
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 327 aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386 |||||||||||||| ||||| || |||||||||| |||||||||||| || |||||||| Sbjct: 6385755 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 6385814 Query: 387 gaagttcaccattg 400 | |||||||||||| Sbjct: 6385815 gtagttcaccattg 6385828
>dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0453B09 Length = 173688 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 327 aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386 |||||||||||||| ||||| || |||||||||| |||||||||||| || |||||||| Sbjct: 51832 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 51891 Query: 387 gaagttcaccattg 400 | |||||||||||| Sbjct: 51892 gtagttcaccattg 51905
>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0663H05 Length = 161938 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 327 aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386 |||||||||||||| ||||| || |||||||||| |||||||||||| || |||||||| Sbjct: 118034 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 118093 Query: 387 gaagttcaccattg 400 | |||||||||||| Sbjct: 118094 gtagttcaccattg 118107
>dbj|AK059944.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G07, full insert sequence Length = 973 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 327 aactcagcttcccagcttgaaggcatccacaaaaaggcccagacatacaccagctttcca 386 |||||||||||||| ||||| || |||||||||| |||||||||||| || |||||||| Sbjct: 670 aactcagcttcccactttgaacgcgtccacaaaaaagcccagacatacgccggctttcca 611 Query: 387 gaagttcaccattg 400 | |||||||||||| Sbjct: 610 gtagttcaccattg 597
>ref|XM_524999.1| PREDICTED: Pan troglodytes LOC469616 (LOC469616), mRNA Length = 1428 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 aatactgataggtaaacaaga 310 ||||||||||||||||||||| Sbjct: 1368 aatactgataggtaaacaaga 1388
>gb|AY151286.1| Homo sapiens cyclooxygenase 2b mRNA, complete cds; alternatively spliced Length = 3669 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 aatactgataggtaaacaaga 310 ||||||||||||||||||||| Sbjct: 1057 aatactgataggtaaacaaga 1077
>gb|AY382629.1| Homo sapiens prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) (PTGS2) gene, complete cds Length = 12551 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 aatactgataggtaaacaaga 310 ||||||||||||||||||||| Sbjct: 5943 aatactgataggtaaacaaga 5963
>emb|AL390375.11| Human DNA sequence from clone RP11-505I19 on chromosome 13, complete sequence Length = 71118 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 gatgaaccaggaagaaataga 167 ||||||||||||||||||||| Sbjct: 50834 gatgaaccaggaagaaataga 50854
>emb|AL033533.5|HS973M2 Human DNA sequence from clone RP5-973M2 on chromosome 1q24.3-31.1 Contains the PTGS2 gene for prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) and a CpG island, complete sequence Length = 84412 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 aatactgataggtaaacaaga 310 ||||||||||||||||||||| Sbjct: 46835 aatactgataggtaaacaaga 46815
>gb|AC073342.3| Homo sapiens BAC clone RP11-556I13 from 7, complete sequence Length = 167869 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 149 tgaaccaggaagaaatagatcacct 173 ||||||||||||||||||| ||||| Sbjct: 51919 tgaaccaggaagaaatagaacacct 51895
>gb|AY229989.1| Homo sapiens prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) (PTGS2) gene, complete cds Length = 11449 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 aatactgataggtaaacaaga 310 ||||||||||||||||||||| Sbjct: 5833 aatactgataggtaaacaaga 5853
>gb|U04636.1|HSU04636 Human cyclooxygenase-2 (hCox-2) gene, complete cds Length = 9453 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 aatactgataggtaaacaaga 310 ||||||||||||||||||||| Sbjct: 4779 aatactgataggtaaacaaga 4799
>dbj|D28235.1|HUMPTGS2 Human PTGS2 gene for prostaglandin endoperoxide synthase-2, complete cds Length = 10997 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 aatactgataggtaaacaaga 310 ||||||||||||||||||||| Sbjct: 5923 aatactgataggtaaacaaga 5943
>gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, complete sequence Length = 171048 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ggccaactgcaagaccaaaa 217 |||||||||||||||||||| Sbjct: 42967 ggccaactgcaagaccaaaa 42986
>gb|AC150515.3| Bos taurus BAC CH240-118E9 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 171213 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 atgaaccaggaagaaataga 167 |||||||||||||||||||| Sbjct: 86300 atgaaccaggaagaaataga 86319
>gb|AC123711.14| Mus musculus chromosome 3, clone RP23-378N16, complete sequence Length = 209168 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ggaactcagcttcccagctt 344 |||||||||||||||||||| Sbjct: 155663 ggaactcagcttcccagctt 155682
>emb|AL592171.8| Human DNA sequence from clone RP13-213F13 on chromosome Xq13.2-21.2, complete sequence Length = 48698 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tgaaccaggaagaaatagat 168 |||||||||||||||||||| Sbjct: 27011 tgaaccaggaagaaatagat 26992
>emb|AL160413.7| Human DNA sequence from clone RP5-837G17 on chromosome 20 Contains ESTs, GSSs and STSs, complete sequence Length = 56899 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 atgaaccaggaagaaataga 167 |||||||||||||||||||| Sbjct: 34125 atgaaccaggaagaaataga 34106
>emb|AL157779.6| Human DNA sequence from clone RP13-310B24 on chromosome X, complete sequence Length = 99632 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgaaccaggaagaaatagat 168 |||||||||||||||||||| Sbjct: 55329 tgaaccaggaagaaatagat 55348
>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete sequence Length = 157870 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 atgaaccaggaagaaataga 167 |||||||||||||||||||| Sbjct: 48718 atgaaccaggaagaaataga 48699
>gb|AC079910.18| Homo sapiens 3 BAC RP11-418B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167434 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tgaaccaggaagaaatagat 168 |||||||||||||||||||| Sbjct: 111666 tgaaccaggaagaaatagat 111647
>gb|AC104513.8| Homo sapiens 3q BAC RP11-115O24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162500 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgaaccaggaagaaatagat 168 |||||||||||||||||||| Sbjct: 145654 tgaaccaggaagaaatagat 145673
>gb|AC022880.10| Homo sapiens chromosome , clone RP11-436P7, complete sequence Length = 166306 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 atgaaccaggaagaaataga 167 |||||||||||||||||||| Sbjct: 13505 atgaaccaggaagaaataga 13486
>gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, complete sequence Length = 166236 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 atgaaccaggaagaaataga 167 |||||||||||||||||||| Sbjct: 1002 atgaaccaggaagaaataga 1021
>gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, complete sequence Length = 146978 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ggccaactgcaagaccaaaa 217 |||||||||||||||||||| Sbjct: 29389 ggccaactgcaagaccaaaa 29408
>gb|AC074041.3|AC074041 Mus musculus strain C57BL6/J chromosome 2 clone RP23-258D16, complete sequence Length = 170548 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 acctataagctatctctgca 189 |||||||||||||||||||| Sbjct: 146249 acctataagctatctctgca 146230
>gb|AC010144.4|AC010144 Homo sapiens BAC clone RP11-309M4 from Y, complete sequence Length = 166347 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgaaccaggaagaaatagat 168 |||||||||||||||||||| Sbjct: 101498 tgaaccaggaagaaatagat 101517
>gb|AC010872.8| Homo sapiens BAC clone RP11-83B6 from 2, complete sequence Length = 189507 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aagaaatagatcacctataa 177 |||||||||||||||||||| Sbjct: 86512 aagaaatagatcacctataa 86493
>emb|AL928836.9| Mouse DNA sequence from clone RP23-239M4 on chromosome 2, complete sequence Length = 97325 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 acctataagctatctctgca 189 |||||||||||||||||||| Sbjct: 26301 acctataagctatctctgca 26320
>emb|AL049875.2|CNS0000O Human chromosome 14 DNA sequence BAC R-111A21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163118 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgaaccaggaagaaatagat 168 |||||||||||||||||||| Sbjct: 113192 tgaaccaggaagaaatagat 113211 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,720,257 Number of Sequences: 3902068 Number of extensions: 3720257 Number of successful extensions: 70103 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70010 Number of HSP's gapped (non-prelim): 93 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)