ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT1_WHEAT (P43400) Metallothionein-like protein 1 (MT-1) 87 3e-17
2MT1_FESRU (O24528) Metallothionein-like protein 1 (MT-1) 54 2e-07
3MT1_ORYSA (Q40633) Metallothionein-like protein 1 47 3e-05
4MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1) 38 0.016
5MT1_HORVU (P26571) Metallothionein-like protein 1 (MT-1) 38 0.016

>MT1_WHEAT (P43400) Metallothionein-like protein 1 (MT-1)|
          Length = 75

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 42/45 (93%), Positives = 43/45 (95%)
 Frame = -2

Query: 411 KMYPDLTEQGSATAQVAXVVVLGMAPENKAGQFEVAAGQSGEGCS 277
           KMYPDLTEQGSA AQVA VVVLG+APENKAGQFEVAAGQSGEGCS
Sbjct: 19  KMYPDLTEQGSAAAQVAAVVVLGVAPENKAGQFEVAAGQSGEGCS 63



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>MT1_FESRU (O24528) Metallothionein-like protein 1 (MT-1)|
          Length = 70

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 30/44 (68%), Positives = 33/44 (75%)
 Frame = -2

Query: 411 KMYPDLTEQGSATAQVAXVVVLGMAPENKAGQFEVAAGQSGEGC 280
           KMYPDL EQ S T Q   VVV+G+A ENKAGQFE+A   SGEGC
Sbjct: 19  KMYPDLDEQASTTTQA--VVVVGVAHENKAGQFEMA---SGEGC 57



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>MT1_ORYSA (Q40633) Metallothionein-like protein 1|
          Length = 74

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = -2

Query: 411 KMYPDLTEQGSATAQVAXVVVLGMAPENKAGQFEVAA--GQSGEGCS 277
           K YPDL E+ S+T      VVLG+APE KA QFE AA  G++  GCS
Sbjct: 19  KKYPDLEEKSSSTK---ATVVLGVAPEKKAQQFEAAAESGETAHGCS 62



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>MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1)|
          Length = 76

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -2

Query: 411 KMYPDLTEQGSATAQVAXVVVLGMAPENKAG-QFEVAAGQSGE---GCS 277
           K YPDL E  +A       VVLG+APE KA  +F  AA +SGE   GCS
Sbjct: 19  KKYPDLEETSTAAQPT---VVLGVAPEKKAAPEFVEAAAESGEAAHGCS 64



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>MT1_HORVU (P26571) Metallothionein-like protein 1 (MT-1)|
          Length = 74

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -2

Query: 411 KMYPDLTEQGSATAQVAXVVVLGMAPENKAGQFEVAA--GQSGEGCS 277
           KMYPDL E+  AT QV  V+VLG+   +   QFE AA  G++  GCS
Sbjct: 19  KMYPDLEEKSGATMQV-TVIVLGVG--SAKVQFEEAAEFGEAAHGCS 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,305,696
Number of Sequences: 219361
Number of extensions: 478544
Number of successful extensions: 1305
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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