ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal40o03 |
|---|---|
| Clone Library Name | barley_pub |
>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 404 Score = 283 bits (725), Expect = 3e-76 Identities = 136/137 (99%), Positives = 137/137 (100%) Frame = -1 Query: 729 IPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTY 550 IPDDNEGKVLRVKLIMKEG+KFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTY Sbjct: 258 IPDDNEGKVLRVKLIMKEGIKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTY 317 Query: 549 FGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 370 FGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT Sbjct: 318 FGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 377 Query: 369 IVGLKIRDLYEQIIAER 319 IVGLKIRDLYEQIIAER Sbjct: 378 IVGLKIRDLYEQIIAER 394
>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 395 Score = 263 bits (673), Expect = 3e-70 Identities = 125/137 (91%), Positives = 133/137 (97%) Frame = -1 Query: 729 IPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTY 550 IPDDNEGKVLRV+LIMKEGVK+F+PVYLFDEGSTI+WIPCGRKLTCSYPGIKF+Y PD+Y Sbjct: 250 IPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSY 309 Query: 549 FGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 370 F EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT Sbjct: 310 FDHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 369 Query: 369 IVGLKIRDLYEQIIAER 319 IVGLKIRDLYEQ+IA + Sbjct: 370 IVGLKIRDLYEQLIANK 386
>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 397 Score = 257 bits (656), Expect = 3e-68 Identities = 121/137 (88%), Positives = 130/137 (94%) Frame = -1 Query: 729 IPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTY 550 IP DNEGKVLRV+LI KEGV++F+PVYLFDEGS+I WIPCGRKLTCSYPGIKF YGPDTY Sbjct: 251 IPGDNEGKVLRVRLIQKEGVQYFSPVYLFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTY 310 Query: 549 FGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 370 FG EV+VLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQT Sbjct: 311 FGNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQT 370 Query: 369 IVGLKIRDLYEQIIAER 319 IVGLKIRDL+EQ+IA + Sbjct: 371 IVGLKIRDLFEQLIASK 387
>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 402 Score = 257 bits (656), Expect = 3e-68 Identities = 118/137 (86%), Positives = 131/137 (95%) Frame = -1 Query: 729 IPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTY 550 IPDD+EGKVLRV++I KEGVKFFNPVYLFDEGSTI+WIPCGRKLTCSYPGIKFSYGPDT+ Sbjct: 256 IPDDDEGKVLRVRMIQKEGVKFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTF 315 Query: 549 FGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 370 +G EV+V+EMDG FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH +FPGSNNGTG FQT Sbjct: 316 YGNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQT 375 Query: 369 IVGLKIRDLYEQIIAER 319 I+GLKIRDL+EQ++A R Sbjct: 376 IIGLKIRDLFEQLVASR 392
>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 375 Score = 229 bits (583), Expect = 9e-60 Identities = 106/134 (79%), Positives = 125/134 (93%) Frame = -1 Query: 729 IPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTY 550 +PDD +G+ LRV+LIMKEG K F+PVYLFDEGSTI+WIPCGRKLTCS+PGIK YGPDT+ Sbjct: 236 VPDD-KGQYLRVRLIMKEGSKMFDPVYLFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTW 294 Query: 549 FGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 370 +GQEVSVLEMDGQFD+L+ELIYVESHLSN S KFYGE+TQQMLK++ FPGSNNGTGLFQT Sbjct: 295 YGQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQT 354 Query: 369 IVGLKIRDLYEQII 328 IVGLK+R++YE+I+ Sbjct: 355 IVGLKVREVYERIV 368
>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) Length = 332 Score = 204 bits (518), Expect = 3e-52 Identities = 88/134 (65%), Positives = 114/134 (85%) Frame = -1 Query: 723 DDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFG 544 +D E K+LRV+L+ KEGVKFF P YLFDEGSTI+W PCGRKLTC+YPGIK YGPD + G Sbjct: 192 EDKESKLLRVRLVQKEGVKFFEPAYLFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMG 251 Query: 543 QEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIV 364 EVS+LE+DG+F+ L+E++YVE+HLS TK+YGE+T+ +LKH D+PG++NGTGLFQ +V Sbjct: 252 NEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLV 311 Query: 363 GLKIRDLYEQIIAE 322 GLK+R +YEQ+ AE Sbjct: 312 GLKMRKVYEQLTAE 325
>ASSY_HALMA (Q5UZ46) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 420 Score = 33.9 bits (76), Expect = 0.53 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Frame = -1 Query: 579 IKFSYGPDTYFGQEVSVLEMDGQFDRLDEL---IYVESHLSNLSTKFYGEVTQQMLKHAD 409 +K YG D G V V + D +F+ +E + VE H+ + + +F + + +AD Sbjct: 25 LKEEYGYDEVIGVTVDVGQPDYEFEEAEETAEALGVEQHVVDATEEFADLCMEAVKANAD 84 Query: 408 FPGSNNGTGLFQTIVGLKIRDLYE 337 + G GT L + ++ I + E Sbjct: 85 YQGYPLGTALARPVIAKAILSVAE 108
>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1052 Score = 32.3 bits (72), Expect = 1.5 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +2 Query: 116 HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAHQTF 295 +G V+ AG H + +S F +T HK +E HS + E+ + F F Sbjct: 769 YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNVQ--F 824 Query: 296 AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 406 GTP + M + + RS+ FS +V K + L L G Sbjct: 825 VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862
>KPPR_PINPS (P81664) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) (Fragments) Length = 35 Score = 32.3 bits (72), Expect = 1.5 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -1 Query: 588 YPGIKFSYGPDTYFGQEVSVLEMDGQFDR 502 Y +KF YG T +VSVLEMDGQFDR Sbjct: 8 YEQVKF-YGEVTQQMLKVSVLEMDGQFDR 35
>EXOS2_HUMAN (Q13868) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 4) (Exosome component 2) Length = 293 Score = 30.8 bits (68), Expect = 4.5 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -1 Query: 573 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 436 F G TY G+E + + G +R+++LI V++ L T++ GEV Sbjct: 39 FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYIGEV 80
>EXOS2_MOUSE (Q8VBV3) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 4) (Exosome component 2) Length = 293 Score = 30.4 bits (67), Expect = 5.8 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -1 Query: 573 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 436 F G TY G+E + + G +R+++LI V++ L T++ GEV Sbjct: 39 FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYNGEV 80
>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like| protein FB Length = 1019 Score = 30.4 bits (67), Expect = 5.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 307 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 414 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 7.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 307 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 414 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 7.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 307 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 414 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 30.0 bits (66), Expect = 7.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 307 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 414 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like| protein 1224-5/1F Length = 1019 Score = 30.0 bits (66), Expect = 7.6 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +1 Query: 307 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 414 RN P+S ++ + + + S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640
>NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 447 Score = 29.6 bits (65), Expect = 10.0 Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Frame = -3 Query: 292 SLMSPKFKFMNHFITNSM-RMSILTFLVTSLNILQLEDGRKFTAELMKTCILNFSKILSM 116 S + + F+N + N M MS+L F++ S N+ + ++ ++++ K + + Sbjct: 329 SQTNSRLMFINKGMINFMPSMSLLWFMLCSSNMGSPVSLNLISEVMLLIGMISWLKFMML 388 Query: 115 MRVSY-VSS*HISMYIFSHVSMQKIHVLARIKSG 17 + + Y + S S+Y+F ++ KI ++ +IK+G Sbjct: 389 ILMMYCLFSFIYSIYLFMFINHGKIFIMFKIKNG 422 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,982,006 Number of Sequences: 219361 Number of extensions: 2130050 Number of successful extensions: 5375 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5374 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
