>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  124 bits (310), Expect = 2e-28
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
 Frame = -3

Query: 523  KWQQDYLVVSKWFAXQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGS-PVSF 347
            KW Q+ LV+ KWF  QATS     +  VR LL H +F M NPN++ SLIG F GS P +F
Sbjct: 737  KWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAF 796

Query: 346  HAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGL 167
            HA+DGSGY FL E++  L+  NPQVASR++    R +RYD  RQ   +A LE +     L
Sbjct: 797  HAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENL 856

Query: 166  SENVYEIASKSLA 128
            S ++YE  +K+LA
Sbjct: 857  SGDLYEKITKALA 869

>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  110 bits (274), Expect = 3e-24
 Identities = 54/132 (40%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
 Frame = -3

Query: 523  KWQQDYLVVSKWFAXQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPV-SF 347
            KWQ D LV+ KWFA QAT      +  ++ L+ HP+F+  NPN++ SL+G F    + +F
Sbjct: 737  KWQHDGLVMDKWFALQATRPDDNVLEIIQLLMDHPSFNFNNPNRLRSLVGSFANHNLKAF 796

Query: 346  HAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGL 167
            H   GSGY+FL +V+++L++ NPQVA+R++    R+ R+D  RQ L K  LE +     L
Sbjct: 797  HNVSGSGYRFLTDVLIRLNESNPQVAARLIEPLIRFSRFDAQRQTLMKRALERLSVVENL 856

Query: 166  SENVYEIASKSL 131
            S++++E   K+L
Sbjct: 857  SKDLFEKIEKAL 868

>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 863

 Score =  105 bits (263), Expect = 6e-23
 Identities = 53/131 (40%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
 Frame = -3

Query: 520  WQQDYLVVSKWFAXQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCG-SPVSFH 344
            W+ + LV+ KWFA Q     P  +  V  L  HP F+  NPN++ +L+  F   +P  FH
Sbjct: 732  WRTEPLVLDKWFAVQGRDPNPDALERVIALTQHPDFEPTNPNRLRALVSTFANFNPARFH 791

Query: 343  AKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLS 164
               G+GY FL + +L++D  NP  A+R+V     WRRY      L +AQLE I++   LS
Sbjct: 792  DPSGAGYAFLADEILKVDAFNPMTAARLVEPLGGWRRYKPELGDLMRAQLERIVAHPNLS 851

Query: 163  ENVYEIASKSL 131
            +NV E+ASK+L
Sbjct: 852  KNVLELASKAL 862

>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)|
          Length = 1085

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 35/123 (28%), Positives = 60/123 (48%)
 Frame = -3

Query: 517  QQDYLVVSKWFAXQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAK 338
            + D L++ +W    + SD       ++KL      D +NPN + ++   F  +   FH  
Sbjct: 954  KDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDI 1013

Query: 337  DGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSEN 158
             G GYK + EV+ + DK NP VA+++   F  W + D  RQ L   ++  ++    +S N
Sbjct: 1014 SGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNN 1073

Query: 157  VYE 149
            + E
Sbjct: 1074 LKE 1076

>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3206

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -3

Query: 442 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASR 263
           +R+ + +  FDM N  KV+ LIG         H +DG        V   L+++N  + + 
Sbjct: 500 LRQRIKNTTFDMGNNTKVHELIG---------HRQDG--------VFRHLNRLNNSILAA 542

Query: 262 MVSAFSRWRRYDETRQALAKAQLEMI--ISANGLSENVYEIASKS 134
             S+   W   +E+   LA+   +    I++ G+S    +I++K+
Sbjct: 543 NGSSTIEWESMNESLLELARWHNKRTESIASGGISSFRNKISAKA 587

>BMAL1_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocator-like|
           protein 1 (Brain and muscle ARNT-like 1) (Member of PAS
           protein 3) (Basic-helix-loop-helix-PAS orphan MOP3)
           (bHLH-PAS protein JAP3)
          Length = 626

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
 Frame = +1

Query: 187 SSPTGP*QELVSSRHISSIERMLTP-----CGMPPEDLFCR------AVK---QLHPRTC 324
           SS T P + L+ ++    ++  +TP     C       FCR      +VK   +  P TC
Sbjct: 210 SSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC 269

Query: 325 NQNHLSRENSQVTHKSLQLKSIPCSDSACQKQDEP 429
           ++    R++    H +  LKS P +     + +EP
Sbjct: 270 SKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,642,358
Number of Sequences: 219361
Number of extensions: 1511707
Number of successful extensions: 3827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3823
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)