ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41c22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 789 bits (398), Expect = 0.0 Identities = 436/442 (98%), Gaps = 5/442 (1%) Strand = Plus / Minus Query: 8 aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 66 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643 Query: 67 gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 125 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583 Query: 126 gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 184 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523 Query: 185 gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcctccta 243 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463 Query: 244 tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 302 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403 Query: 303 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1402 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 1343 Query: 363 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1342 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 1283 Query: 423 cgactgtcatctttggctgctc 444 |||||||||||||||||||||| Sbjct: 1282 cgactgtcatctttggctgctc 1261
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 638 bits (322), Expect = e-180 Identities = 412/439 (93%), Gaps = 11/439 (2%) Strand = Plus / Minus Query: 12 ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 71 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709 Query: 72 gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatgcttaaaag 125 ||||||| ||||||||| | ||||||||||||||||||| ||||||||||||||| Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650 Query: 126 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 185 ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | ||| Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttggcagtctgg 590 Query: 186 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctcctcctatg 245 |||||||| ||| |||| || |||||||||||||||||||| |||||||||||||||||| Sbjct: 589 tcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctttacctcctcctatg 530 Query: 246 cagcaagagatggtgggtgtgtatggagaattttctaaccgtagaaggaaccagtcttca 305 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 529 cagcaagagatggtgggtgtgtatggagaatgttctaaccgtagaaggtaccagtcttca 470 Query: 306 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 410 Query: 366 cacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcga 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 409 cacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcca 350 Query: 426 ctgtcatctttggctgctc 444 ||||||||||||||||||| Sbjct: 349 ctgtcatctttggctgctc 331
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 636 bits (321), Expect = e-179 Identities = 395/417 (94%), Gaps = 7/417 (1%) Strand = Plus / Minus Query: 34 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 87 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 88 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 147 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 148 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 207 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 208 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 267 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 268 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 327 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 328 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 388 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctc 1181
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 454 bits (229), Expect = e-124 Identities = 363/404 (89%), Gaps = 9/404 (2%) Strand = Plus / Minus Query: 48 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 101 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 102 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 160 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 161 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 220 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 221 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 280 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 281 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 340 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 341 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 400 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 401 tgcccgtactctagcagcttctcgactgtcatctttggctgctc 444 || |||||||| |||| |||||| || |||||||| |||||||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctc 1192
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 448 bits (226), Expect = e-123 Identities = 229/230 (99%) Strand = Plus / Minus Query: 8 aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 67 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7752 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 7693 Query: 68 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7692 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 7633 Query: 128 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7632 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 7573 Query: 188 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 237 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7572 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523 Score = 420 bits (212), Expect = e-114 Identities = 212/212 (100%) Strand = Plus / Minus Query: 233 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 293 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 353 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 413 agcagcttctcgactgtcatctttggctgctc 444 |||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctc 7144 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 359 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 418 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 419 ttctcgactgtcatctttggctg 441 ||||| | |||||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctg 3879
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 444 bits (224), Expect = e-121 Identities = 227/228 (99%) Strand = Plus / Minus Query: 8 aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 67 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333 Query: 68 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273 Query: 128 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213 Query: 188 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 235 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165 Score = 321 bits (162), Expect = 1e-84 Identities = 162/162 (100%) Strand = Plus / Minus Query: 283 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 343 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 403 cccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctc 1006
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 357 bits (180), Expect = 2e-95 Identities = 183/184 (99%) Strand = Plus / Minus Query: 261 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 320 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 321 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 381 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 441 gctc 444 |||| Sbjct: 128 gctc 125
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 226 bits (114), Expect = 5e-56 Identities = 150/162 (92%) Strand = Plus / Minus Query: 283 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 342 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 343 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 402 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 403 cccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| |||| |||||| || |||||||| |||||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctc 1202 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 107 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 166 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 167 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 226 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 227 tcctttacc 235 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 176 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 232 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 233 acctcctcct 242 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 282 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 341 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 342 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 401 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 402 gcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctc 1148
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 176 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 232 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 233 acctcctcct 242 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 282 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 341 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 342 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 401 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 402 gcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctc 1186
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 176 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 232 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 233 acctcctcct 242 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 282 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 341 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 342 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 401 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 402 gcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctc 1185
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 176 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 232 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 233 acctcctcct 242 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 282 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 341 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 342 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 401 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 402 gcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctc 969
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 176 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 232 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 233 acctcctcct 242 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 282 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 341 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 342 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 401 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 402 gcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctc 1190
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 99.6 bits (50), Expect = 7e-18 Identities = 137/166 (82%) Strand = Plus / Plus Query: 279 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 338 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 339 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 398 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 399 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctc 444 ||| |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctc 108471 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 134 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 193 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 194 accttccggcacggg 208 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 99.6 bits (50), Expect = 7e-18 Identities = 137/166 (82%) Strand = Plus / Plus Query: 279 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 338 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 339 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 398 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 399 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctc 444 ||| |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctc 30348 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 134 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 193 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 194 accttccggcacggg 208 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 282 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 341 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 342 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 401 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 402 gcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctc 1154
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 89.7 bits (45), Expect = 7e-15 Identities = 132/161 (81%) Strand = Plus / Minus Query: 284 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 343 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 344 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 403 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 404 ccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctc 1149
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 99.6 bits (50), Expect = 7e-18 Identities = 137/166 (82%) Strand = Plus / Plus Query: 279 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 338 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 339 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 398 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 399 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctc 444 ||| |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctc 28303610 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 134 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 193 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 194 accttccggcacggg 208 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 99.6 bits (50), Expect = 7e-18 Identities = 137/166 (82%) Strand = Plus / Plus Query: 279 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 338 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 339 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 398 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 399 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctc 444 ||| |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctc 28286059 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 134 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 193 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 194 accttccggcacggg 208 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 89.7 bits (45), Expect = 7e-15 Identities = 132/161 (81%) Strand = Plus / Minus Query: 284 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 343 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 344 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 403 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 404 ccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctc 1184
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 122 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 181 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 182 ttggtcggtgcaaccttccggcacgggca 210 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 119 bits (60), Expect = 8e-24 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 176 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 232 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 233 acctcctcct 242 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 282 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 341 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 342 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 401 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 402 gcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctc 1197
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 282 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 341 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 342 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 401 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 402 gcccgtactctagcagcttctcgactgtcatctttggctgctc 444 |||||||| | ||||| |||| |||||||| |||||||| Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctc 403
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 280 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 339 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 340 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 399 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 400 gtgcccgtactctagcagcttctcgactgtcatctttggctgc 442 || |||||||| |||||||| || | |||||||| |||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgc 845 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 126 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 185 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 186 tcggtgcaaccttc 199 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 89.7 bits (45), Expect = 7e-15 Identities = 129/157 (82%) Strand = Plus / Minus Query: 288 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 347 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 348 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 407 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 408 actctagcagcttctcgactgtcatctttggctgctc 444 |||| | |||||||||| || ||||| |||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctc 763
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 89.7 bits (45), Expect = 7e-15 Identities = 129/157 (82%) Strand = Plus / Minus Query: 288 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 347 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 348 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 407 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 408 actctagcagcttctcgactgtcatctttggctgctc 444 |||| | |||||||||| || ||||| |||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctc 1158
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 89.7 bits (45), Expect = 7e-15 Identities = 129/157 (82%) Strand = Plus / Minus Query: 288 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 347 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 348 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 407 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 408 actctagcagcttctcgactgtcatctttggctgctc 444 |||| | |||||||||| || ||||| |||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctc 1158
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 87.7 bits (44), Expect = 3e-14 Identities = 128/156 (82%) Strand = Plus / Minus Query: 287 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 346 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 347 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 406 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 407 tactctagcagcttctcgactgtcatctttggctgc 442 ||||| |||||||| || | |||||||| |||||| Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgc 1039 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 126 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 185 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 186 tcggtgcaaccttc 199 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 7e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 305 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 364 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 365 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 420 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 176 ggcattttggtcggtgcaaccttccggcacgggca 210 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 359 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 418 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 419 ttctcgactgtcatctttggctg 441 ||||| | |||||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctg 1310
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 359 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 418 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 419 ttctcgactgtcatctttggctg 441 ||||||| |||||||| ||||| Sbjct: 1182 ttctcgatggtcatcttgggctg 1160
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 126 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 185 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 186 tcggtgcaaccttc 199 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 126 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 185 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 186 tcggtgcaaccttc 199 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 50.1 bits (25), Expect = 0.006 Identities = 103/129 (79%) Strand = Plus / Minus Query: 316 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 375 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 376 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 435 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 436 tggctgctc 444 |||||||| Sbjct: 1243 cggctgctc 1235
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Minus Query: 308 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 357 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 321 catcacccagagctgcctggct 342 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 aatatatttagagatatattaa 42 |||||||||||||||||||||| Sbjct: 67942 aatatatttagagatatattaa 67963
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 tatatttagagatatattaac 43 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 tatatttagagatatattaac 43 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 aaacatcagatattaaaagtg 112 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 atgcagcaagagatggtgggt 263 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 359 agctgcacacgcttgacattgtcctgctc 387 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 aaacatcagatattaaaagtg 112 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 aaacatcagatattaaaagtg 112 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 tatatttagagatatattaac 43 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 cctttacctcctcctatgca 247 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 catcacccagagctgcctggctca 344 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 cctttacctcctcctatgca 247 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 6.0 Identities = 68/84 (80%) Strand = Plus / Minus Query: 317 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 376 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 377 ttgtcctgctcctggacgagcatg 400 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 cctttacctcctcctatgca 247 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 gtcagcaagctgcacacgct 371 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcagatattaaaagtggcat 116 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tcagatattaaaagtggcat 116 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tcagatattaaaagtggcat 116 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 catcacccagagctgcctggctca 344 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aatatatttagagatatatt 40 |||||||||||||||||||| Sbjct: 30454 aatatatttagagatatatt 30473
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ttgacattgtcctgctcctg 390 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 catcacccagagctgcctggctca 344 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 ggtgtaaaggcagctgccgtcgtcgctc 152 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 aaacatgcccagcaatcgcttgga 68 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 cctttacctcctcctatgca 247 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 catcacccagagctgcctggctca 344 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 catcacccagagctgcctggctca 344 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 catcacccagagctgcctggctca 344 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tggcatgcttaaaaggtgta 130 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ttgacattgtcctgctcctg 390 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 catcacccagagctgcctggctca 344 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 cttgctgtgctcctttacctcctc 240 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 cctttacctcctcctatgca 247 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aatatatttagagatatatt 40 |||||||||||||||||||| Sbjct: 62504 aatatatttagagatatatt 62485
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 atcagatattaaaagtggcatgct 119 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,619,265 Number of Sequences: 3902068 Number of extensions: 3619265 Number of successful extensions: 71486 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 71206 Number of HSP's gapped (non-prelim): 232 length of query: 444 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 422 effective length of database: 17,147,199,772 effective search space: 7236118303784 effective search space used: 7236118303784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
