ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41c16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016453.1| Zea mays clone Contig286 mRNA sequence 135 8e-29
2gb|AF379609.1|AF379609 Zea mays malate dehydrogenase mRNA, parti... 135 8e-29
3gb|AY109362.1| Zea mays CL1892_2 mRNA sequence 135 8e-29
4gb|AF007581.1|AF007581 Zea mays cytoplasmic malate dehydrogenase... 135 8e-29
5ref|NM_197014.1| Oryza sativa (japonica cultivar-group) cytoplas... 125 8e-26
6gb|DQ083217.1| Oryza sativa (indica cultivar-group) clone 8S3C18... 125 8e-26
7dbj|AK104691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 8e-26
8dbj|AK066396.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 8e-26
9gb|AF353203.1| Oryza sativa cytoplasmic malate dehydrogenase mRN... 125 8e-26
10gb|AF346003.1|AF346003 Lolium perenne malate dehydrogenase mRNA,... 117 2e-23
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 115 7e-23
12gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055... 115 7e-23
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 115 7e-23
14gb|DQ167567.1| Zea mays clone MCI21 mRNA sequence 66 6e-08
15emb|AJ299059.1|CAR299059 Cicer arietinum mRNA for cytosolic mala... 50 0.004
16gb|AC121571.4| Mus musculus BAC clone RP23-231J6 from 3, complet... 48 0.014
17emb|AJ843126.1| Plantago major mRNA for malate dehydrogenase (md... 48 0.014
18gb|AF367442.1| Prunus persica clone Mdh1 NAD-dependent malate de... 48 0.014
19ref|NM_123699.2| Arabidopsis thaliana malate dehydrogenase/ oxid... 46 0.056
20emb|AM040268.1| Capsicum chinense partial mRNA for cytosolic mal... 46 0.056
21gb|AY091220.1| Arabidopsis thaliana putative cytosolic malate de... 46 0.056
22gb|AY072137.1| Arabidopsis thaliana putative cytosolic malate de... 46 0.056
23emb|AJ299256.1|NTA299256 Nicotiana tabacum mRNA for malate dehyd... 46 0.056
24gb|AY087986.1| Arabidopsis thaliana clone 40174 mRNA, complete s... 46 0.056
25gb|AC112682.12| Mus musculus chromosome 6, clone RP23-332K10, co... 42 0.87
26gb|AY496910.1| Glycine max cytosolic malate dehydrogenase mRNA, ... 42 0.87
27emb|CR954247.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 42 0.87
28gb|AF020272.1|AF020272 Medicago sativa cytosolic malate dehydrog... 42 0.87
29ref|NM_100321.2| Arabidopsis thaliana malate dehydrogenase/ oxid... 40 3.4
30gb|DQ225182.1| Lycopersicon chilense malate dehydrogenase mRNA, ... 40 3.4
31gb|BC053105.1| Mus musculus phosphorylase kinase beta, mRNA (cDN... 40 3.4
32ref|NM_199446.1| Mus musculus phosphorylase kinase beta (Phkb), ... 40 3.4
33gb|BC068420.1| Danio rerio wu:fj56a04, mRNA (cDNA clone IMAGE:69... 40 3.4
34gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, comple... 40 3.4
35gb|AC117185.2| Mus musculus BAC clone RP23-37M7 from 8, complete... 40 3.4
36emb|AL445195.4| Human DNA sequence from clone RP11-427O13 on chr... 40 3.4
37gb|AC079243.7| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 3.4
38gb|AY133655.1| Arabidopsis thaliana At1g04410/F19P19_13 mRNA, co... 40 3.4
39gb|AY081563.1| Arabidopsis thaliana unknown protein (At1g04410) ... 40 3.4
40gb|AC092445.4| Homo sapiens BAC clone RP11-676H8 from 4, complet... 40 3.4
41dbj|AK165815.1| Mus musculus 13 days embryo brain cDNA, RIKEN fu... 40 3.4
42gb|AY065134.1| Arabidopsis thaliana unknown protein (At1g04410; ... 40 3.4
43gb|AY050374.1| Arabidopsis thaliana At1g04410/F19P19_13 mRNA, co... 40 3.4
44dbj|AK089493.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 3.4
45emb|BX815185.1|CNS0ACZH Arabidopsis thaliana Full-length cDNA Co... 40 3.4
46emb|BX815710.1|CNS0ACSG Arabidopsis thaliana Full-length cDNA Co... 40 3.4
47gb|AY088023.1| Arabidopsis thaliana clone 40467 mRNA, complete s... 40 3.4
48gb|AC158188.2| Selaginella moellendorffii clone JGIASXY-5I4, com... 40 3.4
49dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.4
50gb|M74695.1|HIVGP120K Human immunodeficiency virus type 1 env ge... 40 3.4 
>gb|BT016453.1| Zea mays clone Contig286 mRNA sequence
          Length = 1354

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                        
Query: 154  atttactcaaggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgca 213
            |||||||| |||||||||||||| |||| ||||||||||| |||||| ||||| || |||
Sbjct: 1087 atttactcgaggcatgagtaagcaagcgtcttctcctccgtcagctcttgggcagtggca 1028

                                                        
Query: 214  tccatcttcttcctcgagaactcatcaatcgggagcccttgaac 257
            |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1027 tccatcttcttccttgagaactcatcaatcgggaggccttgaac 984
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>gb|AF379609.1|AF379609 Zea mays malate dehydrogenase mRNA, partial cds
          Length = 529

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                       
Query: 154 atttactcaaggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgca 213
           |||||||| |||||||||||||| |||| ||||||||||| |||||| ||||| || |||
Sbjct: 335 atttactcgaggcatgagtaagcaagcgtcttctcctccgtcagctcttgggcagtggca 276

                                                       
Query: 214 tccatcttcttcctcgagaactcatcaatcgggagcccttgaac 257
           |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 275 tccatcttcttccttgagaactcatcaatcgggaggccttgaac 232
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>gb|AY109362.1| Zea mays CL1892_2 mRNA sequence
          Length = 943

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                       
Query: 154 atttactcaaggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgca 213
           |||||||| |||||||||||||| |||| ||||||||||| |||||| ||||| || |||
Sbjct: 916 atttactcgaggcatgagtaagcaagcgtcttctcctccgtcagctcttgggcagtggca 857

                                                       
Query: 214 tccatcttcttcctcgagaactcatcaatcgggagcccttgaac 257
           |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 856 tccatcttcttccttgagaactcatcaatcgggaggccttgaac 813
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>gb|AF007581.1|AF007581 Zea mays cytoplasmic malate dehydrogenase mRNA, complete cds
          Length = 1275

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                        
Query: 154  atttactcaaggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgca 213
            |||||||| |||||||||||||| |||| ||||||||||| |||||| ||||| || |||
Sbjct: 1078 atttactcgaggcatgagtaagcaagcgtcttctcctccgtcagctcttgggcagtggca 1019

                                                        
Query: 214  tccatcttcttcctcgagaactcatcaatcgggagcccttgaac 257
            |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1018 tccatcttcttccttgagaactcatcaatcgggaggccttgaac 975
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>ref|NM_197014.1| Oryza sativa (japonica cultivar-group) cytoplasmic malate
            dehydrogenase (OSJNBa0055P24.3), mRNA
          Length = 1381

 Score =  125 bits (63), Expect = 8e-26
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                        
Query: 163  aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
            |||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1090 aggcatgagtaagcgagcgtcttctcctccgacagctcctgggcagtcgcgtccatcttc 1031

                                                       
Query: 223  ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
            ||||| |||||||| || |||||||| || |||||||| ||||
Sbjct: 1030 ttccttgagaactcgtcgatcgggagaccctgaacaatcgtcc 988
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>gb|DQ083217.1| Oryza sativa (indica cultivar-group) clone 8S3C18 mRNA sequence
          Length = 360

 Score =  125 bits (63), Expect = 8e-26
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                       
Query: 163 aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
           |||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 175 aggcatgagtaagcgagcgtcttctcctccgacagctcctgggcagtcgcgtccatcttc 116

                                                      
Query: 223 ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
           ||||| |||||||| || |||||||| || |||||||| ||||
Sbjct: 115 ttccttgagaactcgtcgatcgggagaccctgaacaatcgtcc 73
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>dbj|AK104691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G07, full
            insert sequence
          Length = 1326

 Score =  125 bits (63), Expect = 8e-26
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                        
Query: 163  aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
            |||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1096 aggcatgagtaagcgagcgtcttctcctccgacagctcctgggcagtcgcgtccatcttc 1037

                                                       
Query: 223  ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
            ||||| |||||||| || |||||||| || |||||||| ||||
Sbjct: 1036 ttccttgagaactcgtcgatcgggagaccctgaacaatcgtcc 994
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>dbj|AK066396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064D20, full
            insert sequence
          Length = 1392

 Score =  125 bits (63), Expect = 8e-26
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                        
Query: 163  aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
            |||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1101 aggcatgagtaagcgagcgtcttctcctccgacagctcctgggcagtcgcgtccatcttc 1042

                                                       
Query: 223  ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
            ||||| |||||||| || |||||||| || |||||||| ||||
Sbjct: 1041 ttccttgagaactcgtcgatcgggagaccctgaacaatcgtcc 999
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>gb|AF353203.1| Oryza sativa cytoplasmic malate dehydrogenase mRNA, complete cds
          Length = 1371

 Score =  125 bits (63), Expect = 8e-26
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                        
Query: 163  aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
            |||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1081 aggcatgagtaagcgagcgtcttctcctccgacagctcctgggcagtcgcgtccatcttc 1022

                                                       
Query: 223  ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
            ||||| |||||||| || |||||||| || |||||||| ||||
Sbjct: 1021 ttccttgagaactcgtcgatcgggagaccctgaacaatcgtcc 979
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>gb|AF346003.1|AF346003 Lolium perenne malate dehydrogenase mRNA, partial cds
          Length = 587

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                       
Query: 163 aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
           ||||| ||||| || || |||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 344 aggcacgagtaggcgagagccttctcctccgagagctcctgggctgtggcatccatcttc 285

                                                      
Query: 223 ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
           || || |||||||| || |||||||||||||||||||||||||
Sbjct: 284 tttcttgagaactcgtcgatcgggagcccttgaacaattgtcc 242



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 110 cttttattcaaaacatcagagc 131
           ||||||||||||||||||||||
Sbjct: 396 cttttattcaaaacatcagagc 375
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  115 bits (58), Expect = 7e-23
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                            
Query: 163      aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
                |||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 17402508 aggcatgagtaagcgagcgtcttctcctccgacagctcctgggcagtcgcgtccatcttc 17402449

                                          
Query: 223      ttcctcgagaactcatcaatcgggag 248
                ||||| |||||||| || ||||||||
Sbjct: 17402448 ttccttgagaactcgtcgatcgggag 17402423
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>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete
             sequence
          Length = 134058

 Score =  115 bits (58), Expect = 7e-23
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                         
Query: 163   aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
             |||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 31503 aggcatgagtaagcgagcgtcttctcctccgacagctcctgggcagtcgcgtccatcttc 31444

                                       
Query: 223   ttcctcgagaactcatcaatcgggag 248
             ||||| |||||||| || ||||||||
Sbjct: 31443 ttccttgagaactcgtcgatcgggag 31418
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  115 bits (58), Expect = 7e-23
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                            
Query: 163      aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
                |||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 17411548 aggcatgagtaagcgagcgtcttctcctccgacagctcctgggcagtcgcgtccatcttc 17411489

                                          
Query: 223      ttcctcgagaactcatcaatcgggag 248
                ||||| |||||||| || ||||||||
Sbjct: 17411488 ttccttgagaactcgtcgatcgggag 17411463
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>gb|DQ167567.1| Zea mays clone MCI21 mRNA sequence
          Length = 282

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 154 atttactcaaggcatgagtaagccagcgccttctcctccgacagctcctgggc 206
           |||||||| |||||||||||||| |||| ||||||||||| |||||| |||||
Sbjct: 60  atttactcgaggcatgagtaagcaagcgtcttctcctccgtcagctcttgggc 8
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>emb|AJ299059.1|CAR299059 Cicer arietinum mRNA for cytosolic malate dehydrogenase (ORF1), clone
            CanCMDH
          Length = 1399

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 213  atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaatt 261
            ||||| ||||||||| ||||||||||| ||||  || ||||||||||||
Sbjct: 1008 atccaacttcttccttgagaactcatcgatcgaaagtccttgaacaatt 960
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>gb|AC121571.4| Mus musculus BAC clone RP23-231J6 from 3, complete sequence
          Length = 195006

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 106    gtttcttttattcaaaacatcaga 129
              ||||||||||||||||||||||||
Sbjct: 131186 gtttcttttattcaaaacatcaga 131163
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>emb|AJ843126.1| Plantago major mRNA for malate dehydrogenase (mdh1 gene)
          Length = 1353

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 213  atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
            ||||| ||| ||||| |||||||||||||| || || |||||||||||
Sbjct: 1005 atccaactttttccttgagaactcatcaatgggaagtccttgaacaat 958
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>gb|AF367442.1| Prunus persica clone Mdh1 NAD-dependent malate dehydrogenase (mdh1)
           mRNA, complete cds
          Length = 1491

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 205 gcggtcgcatccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
           ||||| || |||| ||||||||| ||||| || ||||| | |||||||||||||||
Sbjct: 950 gcggttgcgtccaacttcttcctagagaattcgtcaatagagagcccttgaacaat 895
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>ref|NM_123699.2| Arabidopsis thaliana malate dehydrogenase/ oxidoreductase AT5G43330
            mRNA, complete cds
          Length = 1308

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 83/103 (80%)
 Strand = Plus / Minus

                                                                        
Query: 163  aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
            |||||||||||||| ||  ||||||| |||  || |||||  || |||  ||||||||||
Sbjct: 1111 aggcatgagtaagcgaggtccttctcttccttcaactcctctgctgtcaaatccatcttc 1052

                                                       
Query: 223  ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
            ||||||||    ||||||||||| |  ||||||||||| ||||
Sbjct: 1051 ttcctcgatgcgtcatcaatcggtaaaccttgaacaatggtcc 1009
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>emb|AM040268.1| Capsicum chinense partial mRNA for cytosolic malate dehydrogenase
           (mdh gene)
          Length = 773

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 80/99 (80%)
 Strand = Plus / Minus

                                                                       
Query: 162 aaggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatctt 221
           |||||| ||||||||||  || || |||||||| |||||||  || |||   |||| |||
Sbjct: 546 aaggcaggagtaagccaatgctttttcctccgatagctcctcagctgtcaagtccaactt 487

                                                  
Query: 222 cttcctcgagaactcatcaatcgggagcccttgaacaat 260
           ||| || |||||||| ||||| || || |||||||||||
Sbjct: 486 ctttcttgagaactcgtcaattggaagaccttgaacaat 448
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>gb|AY091220.1| Arabidopsis thaliana putative cytosolic malate dehydrogenase
           (At5g43330) mRNA, complete cds
          Length = 1030

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 83/103 (80%)
 Strand = Plus / Minus

                                                                       
Query: 163 aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
           |||||||||||||| ||  ||||||| |||  || |||||  || |||  ||||||||||
Sbjct: 992 aggcatgagtaagcgaggtccttctcttccttcaactcctctgctgtcaaatccatcttc 933

                                                      
Query: 223 ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
           ||||||||    ||||||||||| |  ||||||||||| ||||
Sbjct: 932 ttcctcgatgcgtcatcaatcggtaaaccttgaacaatggtcc 890
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>gb|AY072137.1| Arabidopsis thaliana putative cytosolic malate dehydrogenase
            (At5g43330) mRNA, complete cds
          Length = 1198

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 83/103 (80%)
 Strand = Plus / Minus

                                                                        
Query: 163  aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
            |||||||||||||| ||  ||||||| |||  || |||||  || |||  ||||||||||
Sbjct: 1065 aggcatgagtaagcgaggtccttctcttccttcaactcctctgctgtcaaatccatcttc 1006

                                                       
Query: 223  ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
            ||||||||    ||||||||||| |  ||||||||||| ||||
Sbjct: 1005 ttcctcgatgcgtcatcaatcggtaaaccttgaacaatggtcc 963
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>emb|AJ299256.1|NTA299256 Nicotiana tabacum mRNA for malate dehydrogenase (md1 gene)
          Length = 1328

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 214 tccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
           |||| |||||| || |||||||||||||| || || |||||||||||
Sbjct: 996 tccaacttctttcttgagaactcatcaattggaagaccttgaacaat 950
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>gb|AY087986.1| Arabidopsis thaliana clone 40174 mRNA, complete sequence
          Length = 1239

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 83/103 (80%)
 Strand = Plus / Minus

                                                                        
Query: 163  aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
            |||||||||||||| ||  ||||||| |||  || |||||  || |||  ||||||||||
Sbjct: 1065 aggcatgagtaagcgaggtccttctcttccttcaactcctctgctgtcaaatccatcttc 1006

                                                       
Query: 223  ttcctcgagaactcatcaatcgggagcccttgaacaattgtcc 265
            ||||||||    ||||||||||| |  ||||||||||| ||||
Sbjct: 1005 ttcctcgatgcgtcatcaatcggtaaaccttgaacaatggtcc 963
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>gb|AC112682.12| Mus musculus chromosome 6, clone RP23-332K10, complete sequence
          Length = 206903

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 125    tcagagcatcaactgctcttc 145
              |||||||||||||||||||||
Sbjct: 126558 tcagagcatcaactgctcttc 126538
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>gb|AY496910.1| Glycine max cytosolic malate dehydrogenase mRNA, complete cds
          Length = 1312

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 163  aggcatgagtaagccagcgccttctcctc 191
            ||||||||||||||||  |||||||||||
Sbjct: 1044 aggcatgagtaagccaatgccttctcctc 1016
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>emb|CR954247.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome II, complete
              sequence
          Length = 635328

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 154    atttactcaaggcatgagtaa 174
              |||||||||||||||||||||
Sbjct: 505077 atttactcaaggcatgagtaa 505057
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>gb|AF020272.1|AF020272 Medicago sativa cytosolic malate dehydrogenase (cmdh) mRNA, complete
            cds
          Length = 1397

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 214  tccatcttcttcctcgagaactcatcaat 242
            |||| ||||||||| ||||||||||||||
Sbjct: 1002 tccaacttcttccttgagaactcatcaat 974
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>ref|NM_100321.2| Arabidopsis thaliana malate dehydrogenase/ oxidoreductase AT1G04410
            mRNA, complete cds
          Length = 1484

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 213  atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
            ||||||||||||||| || |  ||||||||||| || ||||| |||||
Sbjct: 1087 atccatcttcttccttgatacttcatcaatcggaaggccttggacaat 1040
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>gb|DQ225182.1| Lycopersicon chilense malate dehydrogenase mRNA, complete cds
          Length = 1005

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 161  caaggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatct 220
            ||||||| ||||||||||  || || ||||| || || |||| ||| |||   |||| ||
Sbjct: 1000 caaggcaggagtaagccaatgctttttcctctgatagttcctcggctgtcaagtccaact 941

                                                    
Query: 221  tcttcctcgagaactcatcaatcgggagcccttgaacaat 260
            |||| || |||||||| ||||| || || |||||||||||
Sbjct: 940  tctttcttgagaactcgtcaattggaagaccttgaacaat 901
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>gb|BC053105.1| Mus musculus phosphorylase kinase beta, mRNA (cDNA clone MGC:62514
           IMAGE:6409425), complete cds
          Length = 4640

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 aggtttcttttattcaaaac 123
           ||||||||||||||||||||
Sbjct: 728 aggtttcttttattcaaaac 747
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>ref|NM_199446.1| Mus musculus phosphorylase kinase beta (Phkb), mRNA
          Length = 4640

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 aggtttcttttattcaaaac 123
           ||||||||||||||||||||
Sbjct: 728 aggtttcttttattcaaaac 747
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>gb|BC068420.1| Danio rerio wu:fj56a04, mRNA (cDNA clone IMAGE:6970634), partial cds
          Length = 3309

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 179  gcgccttctcctccgacagctcct 202
            |||||||||||||||||| |||||
Sbjct: 2876 gcgccttctcctccgacacctcct 2899
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>gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, complete sequence
          Length = 257003

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    aggtttcttttattcaaaac 123
              ||||||||||||||||||||
Sbjct: 123832 aggtttcttttattcaaaac 123851
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>gb|AC117185.2| Mus musculus BAC clone RP23-37M7 from 8, complete sequence
          Length = 188791

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    aggtttcttttattcaaaac 123
              ||||||||||||||||||||
Sbjct: 164232 aggtttcttttattcaaaac 164251
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>emb|AL445195.4| Human DNA sequence from clone RP11-427O13 on chromosome 13 Contains 2
              NADH dehydrogenase pseudogenes and a novel gene, complete
              sequence
          Length = 172064

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 104    aggtttcttttattcaaaacatca 127
              |||||||||||||| |||||||||
Sbjct: 166793 aggtttcttttattaaaaacatca 166816
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>gb|AC079243.7| Mus musculus strain C57BL6/J chromosome 6 clone RP23-64M7, complete
             sequence
          Length = 205508

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    gtgcagctgttctgggtgga 84
             ||||||||||||||||||||
Sbjct: 41094 gtgcagctgttctgggtgga 41113
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>gb|AY133655.1| Arabidopsis thaliana At1g04410/F19P19_13 mRNA, complete cds
          Length = 999

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 213 atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
           ||||||||||||||| || |  ||||||||||| || ||||| |||||
Sbjct: 942 atccatcttcttccttgatacttcatcaatcggaaggccttggacaat 895
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>gb|AY081563.1| Arabidopsis thaliana unknown protein (At1g04410) mRNA, complete cds
          Length = 1223

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 213 atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
           ||||||||||||||| || |  ||||||||||| || ||||| |||||
Sbjct: 942 atccatcttcttccttgatacttcatcaatcggaaggccttggacaat 895
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>gb|AC092445.4| Homo sapiens BAC clone RP11-676H8 from 4, complete sequence
          Length = 173840

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 103    aaggtttcttttattcaaaacatc 126
              ||||||||||||||| ||||||||
Sbjct: 120506 aaggtttcttttattgaaaacatc 120483
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>dbj|AK165815.1| Mus musculus 13 days embryo brain cDNA, RIKEN full-length enriched
           library, clone:G630093B19 product:phosphorylase kinase
           beta, full insert sequence
          Length = 1015

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 aggtttcttttattcaaaac 123
           ||||||||||||||||||||
Sbjct: 723 aggtttcttttattcaaaac 742
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>gb|AY065134.1| Arabidopsis thaliana unknown protein (At1g04410; F19P19.13) mRNA,
            complete cds
          Length = 1314

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 213  atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
            ||||||||||||||| || |  ||||||||||| || ||||| |||||
Sbjct: 1028 atccatcttcttccttgatacttcatcaatcggaaggccttggacaat 981
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>gb|AY050374.1| Arabidopsis thaliana At1g04410/F19P19_13 mRNA, complete cds
          Length = 1309

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 213  atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
            ||||||||||||||| || |  ||||||||||| || ||||| |||||
Sbjct: 1024 atccatcttcttccttgatacttcatcaatcggaaggccttggacaat 977
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>dbj|AK089493.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730039M10
           product:similar to phosphorylase kinase (EC 2.7.1.38)
           beta chain [Homo sapiens], full insert sequence
          Length = 1972

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 aggtttcttttattcaaaac 123
           ||||||||||||||||||||
Sbjct: 766 aggtttcttttattcaaaac 785
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>emb|BX815185.1|CNS0ACZH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS3ZH07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 541

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 213 atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
           ||||||||||||||| || |  ||||||||||| || ||||| |||||
Sbjct: 252 atccatcttcttccttgatacttcatcaatcggaaggccttggacaat 205
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>emb|BX815710.1|CNS0ACSG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS87ZA02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 600

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 213 atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
           ||||||||||||||| || |  ||||||||||| || ||||| |||||
Sbjct: 317 atccatcttcttccttgatacttcatcaatcggaaggccttggacaat 270
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>gb|AY088023.1| Arabidopsis thaliana clone 40467 mRNA, complete sequence
          Length = 1351

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 213  atccatcttcttcctcgagaactcatcaatcgggagcccttgaacaat 260
            ||||||||||||||| || |  ||||||||||| || ||||| |||||
Sbjct: 1064 atccatcttcttccttgatacttcatcaatcggaaggccttggacaat 1017
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>gb|AC158188.2| Selaginella moellendorffii clone JGIASXY-5I4, complete sequence
          Length = 37581

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  tcgcatccatcttcttcctc 228
            ||||||||||||||||||||
Sbjct: 6104 tcgcatccatcttcttcctc 6123
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>dbj|AB025638.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWF20
          Length = 91193

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                        
Query: 163  aggcatgagtaagccagcgccttctcctccgacagctcctgggcggtcgcatccatcttc 222
            |||||||||||||| ||  ||||||| |||  || |||||  || |||  ||||||||||
Sbjct: 7544 aggcatgagtaagcgaggtccttctcttccttcaactcctctgctgtcaaatccatcttc 7485

                    
Query: 223  ttcctcga 230
            ||||||||
Sbjct: 7484 ttcctcga 7477
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>gb|M74695.1|HIVGP120K Human immunodeficiency virus type 1 env gene, partial cds (a11)
          Length = 396

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 113 ttattcaaaacatcagagca 132
           ||||||||||||||||||||
Sbjct: 206 ttattcaaaacatcagagca 187


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,478,468
Number of Sequences: 3902068
Number of extensions: 2478468
Number of successful extensions: 44590
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 44493
Number of HSP's gapped (non-prelim): 95
length of query: 265
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 243
effective length of database: 17,147,199,772
effective search space: 4166769544596
effective search space used: 4166769544596
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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