ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40n11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACOD2_RAT (Q6P7B9) Acyl-CoA desaturase 2 (EC 1.14.19.1) (Stearoy... 31 4.2
2MSHR_FELCA (Q865E9) Melanocyte-stimulating hormone receptor (MSH... 30 5.5

>ACOD2_RAT (Q6P7B9) Acyl-CoA desaturase 2 (EC 1.14.19.1) (Stearoyl-CoA|
           desaturase 2) (Fatty acid desaturase 2)
           (Delta(9)-desaturase 2)
          Length = 358

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 602 RPIVACLLFHISALCGVTQTSNCGIVYCFI*ALYVVL 492
           R IV   L HI AL G+T   +C +  C    LY V+
Sbjct: 73  RNIVLMALLHIGALYGITLVPSCKVYTCLFAYLYYVI 109



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>MSHR_FELCA (Q865E9) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 317

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 509 ALYVVLLRRPTVACIFFNYSALSSLLVYKSLMETF-HIFMNASLN*TILGRYYC*W 345
           +L V+  R P   C+F N++   +L++  S+++ F + F +  L  T+     C W
Sbjct: 262 SLMVLCPRHPICGCVFKNFNLFLTLIICNSIVDPFIYAFRSQELRKTLQEVLLCSW 317


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,619,434
Number of Sequences: 219361
Number of extensions: 2058441
Number of successful extensions: 4183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4183
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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