ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9a16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 151 ataaaagaaaatctaacatcaca 173 ||||||||||||||||||||||| Sbjct: 1086885 ataaaagaaaatctaacatcaca 1086863
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete sequence Length = 102078 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 132 caaaatagttaagaacaaaataaaagaaaat 162 ||||||| |||||||||||| |||||||||| Sbjct: 42074 caaaataattaagaacaaaaaaaaagaaaat 42104
>emb|AL592524.4| Human DNA sequence from clone RP11-2B19 on chromosome 1 Contains a pseudogene similar to part of NADH dehydrogenase 2 (MTND2), complete sequence Length = 101510 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 216 agcaaaatgaggcatagaaatc 237 |||||||||||||||||||||| Sbjct: 37150 agcaaaatgaggcatagaaatc 37129
>gb|AC098653.2| Homo sapiens chromosome 1 clone RP11-393P15, complete sequence Length = 178316 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 216 agcaaaatgaggcatagaaatc 237 |||||||||||||||||||||| Sbjct: 43897 agcaaaatgaggcatagaaatc 43918
>emb|AL672031.10| Mouse DNA sequence from clone RP23-433D6 on chromosome X, complete sequence Length = 183828 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 aacaaaataaaagaaaatctaa 166 |||||||||||||||||||||| Sbjct: 7625 aacaaaataaaagaaaatctaa 7604
>dbj|AP001681.1| Homo sapiens genomic DNA, chromosome 21q, section 25/105 Length = 340000 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 aacaaaataaaagaaaatctaa 166 |||||||||||||||||||||| Sbjct: 2364 aacaaaataaaagaaaatctaa 2385
>dbj|AP001136.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B738P18, LL56-APP region, complete sequence Length = 88499 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 aacaaaataaaagaaaatctaa 166 |||||||||||||||||||||| Sbjct: 43747 aacaaaataaaagaaaatctaa 43768
>gb|AC009176.5|ATAC009176 Arabidopsis thaliana chromosome III P1 MLP3 genomic sequence, complete sequence Length = 79296 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 gttatcagacaaaatagttaa 143 ||||||||||||||||||||| Sbjct: 53775 gttatcagacaaaatagttaa 53755
>gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence, complete sequence Length = 121054 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 gttatcagacaaaatagttaa 143 ||||||||||||||||||||| Sbjct: 18809 gttatcagacaaaatagttaa 18789
>emb|CR376861.6| Zebrafish DNA sequence from clone CH211-193L9 in linkage group 14, complete sequence Length = 38313 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 tttgacaccaatattatgcaa 479 ||||||||||||||||||||| Sbjct: 12549 tttgacaccaatattatgcaa 12529
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 132 caaaatagttaagaacaaaataaaa 156 |||||||||||||||||||| |||| Sbjct: 183496 caaaatagttaagaacaaaagaaaa 183472 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 132 caaaatagttaagaacaaaataaaa 156 |||||||||||||||||||| |||| Sbjct: 176487 caaaatagttaagaacaaaagaaaa 176463
>emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4 Length = 313050 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 aagaacaaaataaaagaaaat 162 ||||||||||||||||||||| Sbjct: 125074 aagaacaaaataaaagaaaat 125054
>emb|CR847859.13| Zebrafish DNA sequence from clone DKEYP-2F4 in linkage group 14, complete sequence Length = 124837 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 tttgacaccaatattatgcaa 479 ||||||||||||||||||||| Sbjct: 42381 tttgacaccaatattatgcaa 42401
>emb|BX957334.8| Zebrafish DNA sequence from clone DKEY-205I12 in linkage group 5, complete sequence Length = 103284 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 tttgacaccaatattatgcaa 479 ||||||||||||||||||||| Sbjct: 74544 tttgacaccaatattatgcaa 74564
>emb|CR385090.8| Zebrafish DNA sequence from clone CH211-245M19 in linkage group 5, complete sequence Length = 140222 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 131 acaaaatagttaagaacaaaataaa 155 |||||||||||||||| |||||||| Sbjct: 495 acaaaatagttaagaaaaaaataaa 519
>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5, complete sequence Length = 179980 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 131 acaaaatagttaagaacaaaataaa 155 |||||||||||||||| |||||||| Sbjct: 178475 acaaaatagttaagaaaaaaataaa 178499
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 taagaacaaaataaaagaaaa 161 ||||||||||||||||||||| Sbjct: 800597 taagaacaaaataaaagaaaa 800577
>gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081F12 from chromosome 10, complete sequence Length = 128388 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 145 aacaaaataaaagaaaatctaacatcaca 173 |||||||||||| || ||||||||||||| Sbjct: 113548 aacaaaataaaaaaatatctaacatcaca 113520
>emb|BX571786.6| Zebrafish DNA sequence from clone DKEY-250I3 in linkage group 9, complete sequence Length = 180164 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 tttgacaccaatattatgcaa 479 ||||||||||||||||||||| Sbjct: 3909 tttgacaccaatattatgcaa 3889
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 145 aacaaaataaaagaaaatctaacatcaca 173 |||||||||||| || ||||||||||||| Sbjct: 4451940 aacaaaataaaaaaatatctaacatcaca 4451912
>gb|AC026461.11| Homo sapiens chromosome 16 clone RP11-249C24, complete sequence Length = 168392 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 148 aaaataaaagaaaatctaacatcac 172 ||||||||||||||| ||||||||| Sbjct: 142610 aaaataaaagaaaatataacatcac 142634
>gb|AC096579.1| Homo sapiens BAC clone RP11-601N4 from 2, complete sequence Length = 176555 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 tgaacagcaataaaattgttt 414 ||||||||||||||||||||| Sbjct: 155873 tgaacagcaataaaattgttt 155853
>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence Length = 152913 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 acaaaatagttaagaacaaaataaa 155 |||||||||||||||| |||||||| Sbjct: 29849 acaaaatagttaagaaaaaaataaa 29825
>gb|AC009155.3|AC009155 Homo sapiens chromosome 16 clone RP11-5A3, complete sequence Length = 143860 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 148 aaaataaaagaaaatctaacatcac 172 ||||||||||||||| ||||||||| Sbjct: 82370 aaaataaaagaaaatataacatcac 82346
>emb|BX072531.6| Zebrafish DNA sequence from clone CH211-188A22, complete sequence Length = 156372 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 tttgacaccaatattatgcaa 479 ||||||||||||||||||||| Sbjct: 89314 tttgacaccaatattatgcaa 89334
>emb|CT573086.9| Mouse DNA sequence from clone RP23-163K5 on chromosome 16, complete sequence Length = 208384 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 141 taagaacaaaataaaagaaaatctaacat 169 |||||| |||||||||||||||| ||||| Sbjct: 50266 taagaaaaaaataaaagaaaatcaaacat 50238
>gb|AY449462.1| Oikopleura dioica clone BACOIKO006 3xn11, complete sequence Length = 166506 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 tcatgtttgaacagcaataaa 407 ||||||||||||||||||||| Sbjct: 126237 tcatgtttgaacagcaataaa 126257
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 145 aacaaaataaaagaaaatctaacatcaca 173 |||||||||||| || ||||||||||||| Sbjct: 4452761 aacaaaataaaaaaatatctaacatcaca 4452733
>dbj|AP003149.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-198O8, complete sequences Length = 141811 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 141 taagaacaaaataaaagaaaatctaacat 169 |||||| |||||||||||||||| ||||| Sbjct: 52283 taagaaaaaaataaaagaaaatcaaacat 52311
>gb|AC173208.2| Mus musculus BAC clone RP24-335A2 from chromosome 16, complete sequence Length = 234813 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 141 taagaacaaaataaaagaaaatctaacat 169 |||||| |||||||||||||||| ||||| Sbjct: 69190 taagaaaaaaataaaagaaaatcaaacat 69218
>gb|AF017732.1|AF017732 Homo sapiens chromosome 2 cosmids cos111 and cos 607/6 containing immunoglobulin Vk-JkCk region, complete sequence Length = 68790 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 tgaacagcaataaaattgttt 414 ||||||||||||||||||||| Sbjct: 38312 tgaacagcaataaaattgttt 38332
>ref|NG_000834.1| Homo sapiens immunoglobulin kappa locus, proximal V-cluster and J-C cluster (IGK-proximal) on chromosome 2 Length = 515442 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 tgaacagcaataaaattgttt 414 ||||||||||||||||||||| Sbjct: 459854 tgaacagcaataaaattgttt 459874
>dbj|AP001211.3| Homo sapiens genomic DNA, chromosome 2p11.2, clone:cos111 Length = 41117 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 tgaacagcaataaaattgttt 414 ||||||||||||||||||||| Sbjct: 2803 tgaacagcaataaaattgttt 2783
>gb|AC149528.2| Xenopus tropicalis clone ISB-292P1, complete sequence Length = 87806 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 tatacatacttatcatgttt 527 |||||||||||||||||||| Sbjct: 25882 tatacatacttatcatgttt 25863
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 agcaaaatgaggcatagaaa 235 |||||||||||||||||||| Sbjct: 2269130 agcaaaatgaggcatagaaa 2269111
>ref|XM_640380.1| Dictyostelium discoideum hypothetical protein (DDB0216904), partial mRNA Length = 951 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ttttaccatttaagcataga 338 |||||||||||||||||||| Sbjct: 854 ttttaccatttaagcataga 873
>gb|AC102535.17| Mus musculus chromosome 7, clone RP23-61O11, complete sequence Length = 220003 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctcctgacttcttcttcctg 82 |||||||||||||||||||| Sbjct: 170125 ctcctgacttcttcttcctg 170144
>gb|AC147983.3| Mus musculus BAC clone RP24-401J11 from chromosome 17, complete sequence Length = 157958 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ttaagaacaaaataaaagaa 159 |||||||||||||||||||| Sbjct: 18305 ttaagaacaaaataaaagaa 18324
>gb|AC110731.10| Mus musculus chromosome 6, clone RP23-433J5, complete sequence Length = 206482 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 aacaaaataaaagaaaatctaaca 168 ||||||||||||||||| |||||| Sbjct: 121704 aacaaaataaaagaaaacctaaca 121681
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ttaagaacaaaataaaagaa 159 |||||||||||||||||||| Sbjct: 12375820 ttaagaacaaaataaaagaa 12375801
>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete sequence Length = 217754 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaataaaagaaaatctaaca 168 |||||||||||||||||||| Sbjct: 146820 aaataaaagaaaatctaaca 146801
>gb|AC117072.3| Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence Length = 192187 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ttttaccatttaagcataga 338 |||||||||||||||||||| Sbjct: 53183 ttttaccatttaagcataga 53202
>emb|BX957288.10| Zebrafish DNA sequence from clone DKEY-146P4 in linkage group 12, complete sequence Length = 172591 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tttgtgcttctcctgacttc 73 |||||||||||||||||||| Sbjct: 107083 tttgtgcttctcctgacttc 107102
>gb|AC091170.15| Homo sapiens chromosome 18, clone RP11-879D5, complete sequence Length = 198586 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 agaacaaaataaaagaaaat 162 |||||||||||||||||||| Sbjct: 15494 agaacaaaataaaagaaaat 15513
>gb|AC121795.3| Mus musculus BAC clone RP23-421P13 from chromosome 17, complete sequence Length = 204354 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ttaagaacaaaataaaagaa 159 |||||||||||||||||||| Sbjct: 118986 ttaagaacaaaataaaagaa 119005
>gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, complete sequence Length = 249008 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 aagtatacatacttatcatgtttg 528 ||||||||||| |||||||||||| Sbjct: 107684 aagtatacatatttatcatgtttg 107661
>gb|AC119411.16| Medicago truncatula clone mth2-23c14, complete sequence Length = 106790 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 aacaaaataaaagaaaatctaaca 168 ||||||||||||||||| |||||| Sbjct: 64680 aacaaaataaaagaaaaactaaca 64703
>emb|AL390121.6| Human DNA sequence from clone RP11-147C23 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 150396 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 taagaacaaaataaaagaaaatct 164 ||||| |||||||||||||||||| Sbjct: 90184 taagagcaaaataaaagaaaatct 90161
>emb|AL139137.15| Human DNA sequence from clone RP11-58O13 on chromosome 1, complete sequence Length = 137269 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 taaaagaaaatctaacatcacact 175 |||||||||||||||||| ||||| Sbjct: 52208 taaaagaaaatctaacataacact 52185
>emb|AL139415.10| Human DNA sequence from clone RP3-477M7 on chromosome 1 Contains the ENO1 gene for enolase 1 (alpha), two novel genes, a novel pseudogene, a pseudogene similar to part of a Zinc finger protein, a pseudogene similar to part of cytochrome oxidase subunit II, the CA6 gene for carbonic anhydrase VI and a CpG island, complete sequence Length = 141428 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 aacaaaataaaagaaaatctaaca 168 ||||||| |||||||||||||||| Sbjct: 103600 aacaaaaaaaaagaaaatctaaca 103577
>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 Length = 347582 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ttaagaacaaaataaaagaa 159 |||||||||||||||||||| Sbjct: 254217 ttaagaacaaaataaaagaa 254236
>emb|AL023780.1|SPBC14F5 S.pombe chromosome II cosmid c14F5 Length = 34849 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 gcaacatctatagaatttga 495 |||||||||||||||||||| Sbjct: 11249 gcaacatctatagaatttga 11268
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ttaagaacaaaataaaagaa 159 |||||||||||||||||||| Sbjct: 34838 ttaagaacaaaataaaagaa 34819
>emb|AL627170.5| Zebrafish DNA sequence from clone XX-KT73 Contains a novel gene, a reverse transcriptase pseudogene and a novel gene similar to SLC17A6 (solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6), complete sequence Length = 87485 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 agaacaaaataaaagaaaat 162 |||||||||||||||||||| Sbjct: 59139 agaacaaaataaaagaaaat 59158
>emb|AL627163.3| Zebrafish DNA sequence from clone XX-KT90 Contains part of a novel gene and a novel gene similar to SLC17A6 (solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6), complete sequence Length = 93831 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 agaacaaaataaaagaaaat 162 |||||||||||||||||||| Sbjct: 45395 agaacaaaataaaagaaaat 45376
>gb|AC084826.4| Genomic sequence for Mus musculus, clone RP23-146L6, complete sequence Length = 196947 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 ttatcatgtttgcacatgga 536 |||||||||||||||||||| Sbjct: 117776 ttatcatgtttgcacatgga 117757
>emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in linkage group 7, complete sequence Length = 105480 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 agaacaaaataaaagaaaat 162 |||||||||||||||||||| Sbjct: 14595 agaacaaaataaaagaaaat 14576
>dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, contains hoxAb Length = 240727 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 agttaagaacaaaataaaagaaaa 161 ||||||||| |||||||||||||| Sbjct: 193916 agttaagaagaaaataaaagaaaa 193939
>gb|AC083967.5| Homo sapiens chromosome 8, clone RP11-865I6, complete sequence Length = 170241 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 acaaaataaaagaaaatcta 165 |||||||||||||||||||| Sbjct: 90342 acaaaataaaagaaaatcta 90323
>dbj|AK147232.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1000C02 product:hypothetical protein, full insert sequence Length = 7216 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ttaagaacaaaataaaagaa 159 |||||||||||||||||||| Sbjct: 2256 ttaagaacaaaataaaagaa 2237
>dbj|AK155945.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830001L11 product:unclassifiable, full insert sequence Length = 4722 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ttaagaacaaaataaaagaa 159 |||||||||||||||||||| Sbjct: 3511 ttaagaacaaaataaaagaa 3530
>gb|AC090717.7| Homo sapiens chromosome , clone GS1-112G24, complete sequence Length = 123022 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 acaaaataaaagaaaatcta 165 |||||||||||||||||||| Sbjct: 20365 acaaaataaaagaaaatcta 20384
>emb|BX465858.8| Zebrafish DNA sequence from clone DKEY-179I14 in linkage group 17, complete sequence Length = 88708 Score = 40.1 bits (20), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 9 aacacaactaaaaatnaaacaat 31 ||||||||||||||| ||||||| Sbjct: 29607 aacacaactaaaaatcaaacaat 29629
>emb|BX510306.17| Zebrafish DNA sequence from clone CH211-195F19 in linkage group 13, complete sequence Length = 194184 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tttgacaccaatattatgca 478 |||||||||||||||||||| Sbjct: 10142 tttgacaccaatattatgca 10161
>gb|AF318573.1|AF318573 Bovine herpesvirus 4 long unique region, complete sequence Length = 108873 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 gtacacaaaacataattcag 581 |||||||||||||||||||| Sbjct: 3829 gtacacaaaacataattcag 3848
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aaacaaagaactagaatttc 388 |||||||||||||||||||| Sbjct: 18718599 aaacaaagaactagaatttc 18718618
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ttaagaacaaaataaaagaa 159 |||||||||||||||||||| Sbjct: 12372583 ttaagaacaaaataaaagaa 12372564
>gb|AC074329.2|AC074329 Mus musculus strain C57BL/6J chromosome 12 clone RP23-257D2, complete sequence Length = 207872 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 tttgaacagcaataaaattg 411 |||||||||||||||||||| Sbjct: 11476 tttgaacagcaataaaattg 11495
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence Length = 160456 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aaacaaagaactagaatttc 388 |||||||||||||||||||| Sbjct: 67737 aaacaaagaactagaatttc 67756
>gb|AC013475.14| Homo sapiens BAC clone RP11-525B5 from 2, complete sequence Length = 193963 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 agaacaaaataaaagaaaat 162 |||||||||||||||||||| Sbjct: 123026 agaacaaaataaaagaaaat 123007
>gb|AC079181.3|AC079181 Mus musculus strain C57BL/6J chromosome 12 clone RP23-197F8, complete sequence Length = 209058 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 tttgaacagcaataaaattg 411 |||||||||||||||||||| Sbjct: 24217 tttgaacagcaataaaattg 24198
>gb|AC132096.4| Mus musculus BAC clone RP24-392H7 from chromosome 7, complete sequence Length = 114183 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctcctgacttcttcttcctg 82 |||||||||||||||||||| Sbjct: 82005 ctcctgacttcttcttcctg 81986
>emb|Z46383.1|BHV4REGA Bovine herpesvirus type 4 DNA for nonconserved region A Length = 4685 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 gtacacaaaacataattcag 581 |||||||||||||||||||| Sbjct: 3538 gtacacaaaacataattcag 3557
>emb|CR933768.7| Zebrafish DNA sequence from clone CH211-176D22 in linkage group 19, complete sequence Length = 50629 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 tttgacaccaatattatgcaacat 482 ||||||| |||||||||||||||| Sbjct: 8843 tttgacatcaatattatgcaacat 8820
>emb|BX511258.6| Zebrafish DNA sequence from clone CH211-81E5 in linkage group 19, complete sequence Length = 200076 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tttgtgcttctcctgacttc 73 |||||||||||||||||||| Sbjct: 142963 tttgtgcttctcctgacttc 142944
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 tttgaacagcaataaaattg 411 |||||||||||||||||||| Sbjct: 1027115 tttgaacagcaataaaattg 1027096
>emb|CR388164.9| Zebrafish DNA sequence from clone DKEY-74H17 in linkage group 17, complete sequence Length = 115163 Score = 40.1 bits (20), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 9 aacacaactaaaaatnaaacaat 31 ||||||||||||||| ||||||| Sbjct: 25897 aacacaactaaaaatcaaacaat 25919
>dbj|AK113436.1| Ciona intestinalis cDNA, clone:ciad055f21, full insert sequence Length = 2259 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 tttgaaacaaagaactagaatttc 388 |||||||||| ||||||||||||| Sbjct: 375 tttgaaacaaggaactagaatttc 352
>emb|AL929586.19| Zebrafish DNA sequence from clone CH211-188I17, complete sequence Length = 154808 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 aataaaattgttttagtagctcat 425 |||||||||||||||||| ||||| Sbjct: 117306 aataaaattgttttagtaactcat 117283
>emb|BX000438.7| Zebrafish DNA sequence from clone CH211-209M20 in linkage group 20, complete sequence Length = 195087 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 taagaacaaaataaaagaaaatct 164 |||||||||||||||| ||||||| Sbjct: 85697 taagaacaaaataaaaaaaaatct 85720
>gb|AC136316.13| Mus musculus chromosome 1, clone RP24-331K22, complete sequence Length = 197109 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 aacaaagaactagaatttca 389 |||||||||||||||||||| Sbjct: 89967 aacaaagaactagaatttca 89948
>gb|AC166064.4| Mus musculus BAC clone RP23-52K8 from chromosome 17, complete sequence Length = 245671 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 ttatcatgtttgcacatgga 536 |||||||||||||||||||| Sbjct: 139775 ttatcatgtttgcacatgga 139794
>gb|L15441.1|WALHELADR Macropus eugenii ATP-dependent RNA-helicase mRNA, complete cds Length = 2254 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gttatcagacaaaatagtta 142 |||||||||||||||||||| Sbjct: 2000 gttatcagacaaaatagtta 2019
>emb|AL833775.7| Mouse DNA sequence from clone RP23-135L5 on chromosome 4, complete sequence Length = 194640 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ctgacttcttcttcctggac 85 |||||||||||||||||||| Sbjct: 136125 ctgacttcttcttcctggac 136106
>gb|M88480.1|ROHVP4AA Human rotavirus outer capsid protein (VP4) mRNA (segment 4), complete cds Length = 2359 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aacaaaataaaagaaaatct 164 |||||||||||||||||||| Sbjct: 1424 aacaaaataaaagaaaatct 1405
>gb|U08985.1|ZMU08985 Zea mays W22 plasma-membrane H+ ATPase (Zmpma1) gene, exons 4-11, partial cds Length = 1662 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ttgtgcttctcctgacttct 74 |||||||||||||||||||| Sbjct: 334 ttgtgcttctcctgacttct 353 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,130,979 Number of Sequences: 3902068 Number of extensions: 7130979 Number of successful extensions: 172646 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 171970 Number of HSP's gapped (non-prelim): 676 length of query: 582 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 559 effective length of database: 17,143,297,704 effective search space: 9583103416536 effective search space used: 9583103416536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
