ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal40n03 |
|---|---|
| Clone Library Name | barley_pub |
>PCSK6_RAT (Q63415) Proprotein convertase subtilisin/kexin type 6 precursor| (EC 3.4.21.-) (Paired basic amino acid cleaving enzyme 4) (Subtilisin/kexin-like protease PACE4) (Subtilisin-like proprotein convertase 4) (SPC4) Length = 937 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = -3 Query: 337 PRPWRQGPRGSWRLQRRIRWRGLSQPAACSGNPGPEPVPNPRWEVRLL 194 PRPWR W L L+ PA CS P P PV W V++L Sbjct: 28 PRPWR------WLLL-------LALPAVCSALPPPRPVYTNHWAVQVL 62
>BRD2_CANFA (Q5TJG6) Bromodomain-containing protein 2| Length = 803 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 19/86 (22%) Frame = -3 Query: 244 NPGPEPVPNPRWEVRLLCRLEY---------------HPFINIADSVKFKFCHYHIFLRE 110 NP P V NP+ R+ +L+Y PF D+VK YH +++ Sbjct: 60 NPPPPEVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQ 119 Query: 109 PLS----KQQITLLYPDHSSMCLSDF 44 P+ K+++ Y +S C+ DF Sbjct: 120 PMDMGTIKRRLENNYYWAASECMQDF 145
>BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 protein) (O27.1.1)| Length = 801 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 19/86 (22%) Frame = -3 Query: 244 NPGPEPVPNPRWEVRLLCRLEY---------------HPFINIADSVKFKFCHYHIFLRE 110 NP P V NP+ R+ +L+Y PF D+VK YH +++ Sbjct: 60 NPPPPEVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQ 119 Query: 109 PLS----KQQITLLYPDHSSMCLSDF 44 P+ K+++ Y +S C+ DF Sbjct: 120 PMDMGTIKRRLENNYYWAASECMQDF 145
>TCL2_CAEEL (Q9N428) T-cell defective protein 2| Length = 435 Score = 30.8 bits (68), Expect = 4.3 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = -2 Query: 551 SLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVLI 447 +LK + K +RI++L + P+KE+ +S W++I Sbjct: 341 ALKEAKEKEMRIWKLAPFETPKKEVPLYSGRWLVI 375
>PCSK6_HUMAN (P29122) Proprotein convertase subtilisin/kexin type 6 precursor| (EC 3.4.21.-) (Paired basic amino acid cleaving enzyme 4) (Subtilisin/kexin-like protease PACE4) (Subtilisin-like proprotein convertase 4) (SPC4) Length = 969 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/48 (41%), Positives = 23/48 (47%) Frame = -3 Query: 337 PRPWRQGPRGSWRLQRRIRWRGLSQPAACSGNPGPEPVPNPRWEVRLL 194 PRPWR W L L+ PAACS P P PV W V++L Sbjct: 46 PRPWR------WLLL-------LALPAACSAPP-PRPVYTNHWAVQVL 79
>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3| Length = 410 Score = 30.8 bits (68), Expect = 4.3 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%) Frame = +3 Query: 15 SDKRRQLGYTKSDR-HMDEWSGYSKVICCFDKGSRRNIW*WQNLNLTESAILIKGWYSRR 191 + KR + YT + +++ +++ +C + N+ LNLTE I I W+ R Sbjct: 167 ASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL-----LNLTERQIKI--WFQNR 219 Query: 192 HSN----------LTSHRGLGTGSGPGLPEQAAGCDNPRHRIRL*SLHDPRGPCRHGLGH 341 LTS G P P A G N H + + +DP P H Sbjct: 220 RMKYKKDQKAKGMLTSSGGQSPCRSPIPPSAAGGYANSMHSLATSAPYDPHSPTSFSKPH 279 Query: 342 HRTFLL 359 + + Sbjct: 280 QNAYAI 285
>BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomain-containing| FSH-like protein FSRG2) Length = 726 Score = 30.0 bits (66), Expect = 7.4 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 19/86 (22%) Frame = -3 Query: 244 NPGPEPVPNPRWEVRLLCRLEYH---------------PFINIADSVKFKFCHYHIFLRE 110 NP P V NP R +L+Y PF D++K YH ++ Sbjct: 19 NPPPPEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKN 78 Query: 109 PLS----KQQITLLYPDHSSMCLSDF 44 P+ K+++ Y +S C+ DF Sbjct: 79 PMDMGTIKKRLENNYYWSASECMQDF 104
>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)| Length = 726 Score = 30.0 bits (66), Expect = 7.4 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 19/86 (22%) Frame = -3 Query: 244 NPGPEPVPNPRWEVRLLCRLEYH---------------PFINIADSVKFKFCHYHIFLRE 110 NP P V NP R +L+Y PF D++K YH ++ Sbjct: 20 NPPPPEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKN 79 Query: 109 PLS----KQQITLLYPDHSSMCLSDF 44 P+ K+++ Y +S C+ DF Sbjct: 80 PMDMGTIKKRLENNYYWSASECMQDF 105
>KCY_PYRHO (O58988) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 192 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/41 (31%), Positives = 25/41 (60%) Frame = -1 Query: 600 FEKVMEEKRKALDALKKSEERKVEIDKDLQAMQLLSTKKGN 478 F ++ +EK +L+ +K E EID+++ Q+ + K+GN Sbjct: 40 FRQMAKEKGMSLEEFQKYAELHPEIDREVDRRQIEAAKEGN 80
>Y157_AQUAE (O66547) Hypothetical protein aq_157 precursor| Length = 162 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/27 (48%), Positives = 21/27 (77%) Frame = -1 Query: 600 FEKVMEEKRKALDALKKSEERKVEIDK 520 ++K+++EK+K L+ALKKS E K +K Sbjct: 53 YQKLIQEKQKKLEALKKSLESKALSEK 79
>GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (GDF-6)| (Cartilage-derived morphogenetic protein 2) (CDMP-2) (Fragment) Length = 436 Score = 29.6 bits (65), Expect = 9.7 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -3 Query: 262 PAACSGNPGPEPVPNPRWEV 203 PAA S PGP P P WEV Sbjct: 168 PAAGSAEPGPAGAPRPGWEV 187 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,693,302 Number of Sequences: 219361 Number of extensions: 1646538 Number of successful extensions: 5656 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5223 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5650 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
