>TRABD_HUMAN (Q9UGI0) TRABID protein (Zinc finger Ran-binding domain-containing|
           protein 1)
          Length = 708

 Score = 35.8 bits (81), Expect = 0.094
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 452 WTCDQCTYVNPRSAKACQACDH 387
           WTC  CTY N   AK C  CDH
Sbjct: 153 WTCSVCTYENWAKAKRCVVCDH 174



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 470 VDDSNIWTCDQCTYVNPRSAKACQACDHQHR 378
           ++++N W+C  CTY+N   A  C  C  Q R
Sbjct: 82  MENANKWSCHMCTYLNWPRAIRCTQCLSQRR 112

>NEIL3_HUMAN (Q8TAT5) Endonuclease VIII-like 3 (Nei-like 3) (DNA glycosylase|
           FPG2)
          Length = 605

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 452 WTCDQCTYVNPRSAKACQAC 393
           WTC  CT +N  S+KAC AC
Sbjct: 321 WTCVVCTLINKPSSKACDAC 340

>NEIL3_MOUSE (Q8K203) Endonuclease VIII-like 3 (Nei-like 3) (DNA glycosylase|
           FPG2)
          Length = 606

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 452 WTCDQCTYVNPRSAKACQAC 393
           W+C  CT +N  SAKAC AC
Sbjct: 322 WSCVVCTLINRPSAKACDAC 341

>TAMO_DROME (Q9W1A4) Protein tamozhennic|
          Length = 797

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 470 VDDSNIWTCDQCTYVNPRSAKACQAC 393
           V   N W+C  CT++NP + + C+ C
Sbjct: 736 VTSPNEWSCSFCTFLNPDTKRICEMC 761

>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase D) (CANP D) (Small optic lobes protein)
          Length = 1594

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 452 WTCDQCTYVNPRSAKACQAC 393
           WTC +CT VN  +A AC  C
Sbjct: 708 WTCKKCTLVNYSTAMACVVC 727

>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)|
          Length = 3053

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 452  WTCDQCTYVNPRSAKACQACDH 387
            W C  C   N RSAK C AC++
Sbjct: 1473 WECSVCLVRNERSAKKCVACEN 1494

>TAB3_MOUSE (Q571K4) Mitogen-activated protein kinase kinase kinase|
           7-interacting protein 3 (TAK1-binding protein 3)
          Length = 716

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 452 WTCDQCTYVNPRSAKACQACD 390
           W CD CT++N  +   C+ C+
Sbjct: 691 WNCDSCTFLNHPALNRCEQCE 711

>TAB3_HUMAN (Q8N5C8) Mitogen-activated protein kinase kinase kinase|
           7-interacting protein 3 (TAK1-binding protein 3)
           (NF-kappa-B-activating protein 1)
          Length = 712

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 452 WTCDQCTYVNPRSAKACQACD 390
           W CD CT++N  +   C+ C+
Sbjct: 687 WNCDSCTFLNHPALNRCEQCE 707

>TAB2_BRARE (Q5RFW2) Mitogen-activated protein kinase kinase kinase|
           7-interacting protein 2 homolog
          Length = 711

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 467 DDSNIWTCDQCTYVNPRSAKACQACD 390
           DD   W+C  CT++N  +   C+ C+
Sbjct: 681 DDGVQWSCTACTFLNHPALNRCEECE 706

>RYBP_BRARE (Q5EG55) RING1 and YY1-binding protein (Death effector|
           domain-associated factor) (DED-associated factor)
          Length = 257

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 464 DSNIWTCDQCTYVNPRSAKACQACD 390
           D+  W C  CT+ N   A  C  CD
Sbjct: 19  DNGFWDCSVCTFRNSAEAFKCSICD 43

>STM_ARATH (Q38874) Homeobox protein SHOOT MERISTEMLESS|
          Length = 382

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
 Frame = +2

Query: 50  RKELVLWWSTHLSTPYIDETKQSYRYSLCTQRTGWCPRG*GAVSQWTNNADTRKPRP--- 220
           R++L+ WWS H   PY  E ++        + TG   +    ++ W  N   R  +P   
Sbjct: 296 RQQLLDWWSRHYKWPYPSEQQK----LALAESTGLDQK---QINNWFINQRKRHWKPSED 348

Query: 221 --FVCSTLLMPPHSSSPNILSN 280
             FV      P H    N+L N
Sbjct: 349 MQFVVMDATHPHHYFMDNVLGN 370

>RYBP_MOUSE (Q8CCI5) RING1 and YY1-binding protein (Death effector|
           domain-associated factor) (DED-associated factor)
          Length = 228

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 464 DSNIWTCDQCTYVNPRSAKACQACD 390
           D   W C  CT+ N   A  C  CD
Sbjct: 21  DEGFWDCSVCTFRNSAEAFKCSICD 45

>RYBP_HUMAN (Q8N488) RING1 and YY1-binding protein (Death effector|
           domain-associated factor) (DED-associated factor) (YY1
           and E4TF1-associated factor 1) (Apoptin-associating
           protein 1) (APAP-1)
          Length = 228

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 464 DSNIWTCDQCTYVNPRSAKACQACD 390
           D   W C  CT+ N   A  C  CD
Sbjct: 21  DEGFWDCSVCTFRNSAEAFKCSICD 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,697,418
Number of Sequences: 219361
Number of extensions: 1525140
Number of successful extensions: 4187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4187
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)