ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105694.1| Zea mays PCO071849 mRNA sequence 107 4e-20
2emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4,... 101 3e-18
3emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4,... 101 3e-18
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
5dbj|AK060196.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
6gb|BT018114.1| Zea mays clone EL01N0553G12.c mRNA sequence 100 1e-17
7ref|XM_472997.1| Oryza sativa (japonica cultivar-group), predic... 98 4e-17
8gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chrom... 44 0.51
9emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 44 0.51
10gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 44 0.51
11gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence 44 0.51
12dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 44 0.51
13gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 44 0.51
14gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 44 0.51
15gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 44 0.51
16gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 44 0.51
17dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 44 0.51
18dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 44 0.51
19emb|CR382282.9| Zebrafish DNA sequence from clone CH211-208L4 in... 44 0.51
20emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 44 0.51
21emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 44 0.51
22gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome... 42 2.0
23gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, co... 42 2.0
24gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, com... 42 2.0
25ref|XM_746966.1| Aspergillus fumigatus Af293 ATP-dependent RNA h... 42 2.0
26emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on ch... 42 2.0
27gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 8.0
28gb|AE006294.1| Lactococcus lactis subsp. lactis IL1403 section 5... 40 8.0
29gb|AC166347.2| Mus musculus BAC clone RP24-87G12 from chromosome... 40 8.0
30gb|AC069067.17| Homo sapiens 3 BAC RP11-454C18 (Roswell Park Can... 40 8.0
31emb|AL079295.1|HS106I20 Human DNA sequence from clone RP1-106I20... 40 8.0
32emb|AL627263.6| Zebrafish DNA sequence from clone RP71-1L9 in li... 40 8.0
33emb|AL138643.1|ATF7M19 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.0
34emb|CR846095.3| Zebrafish DNA sequence from clone DKEY-209E11 in... 40 8.0
35gb|AC113193.6| Homo sapiens chromosome 11, clone RP11-1026G19, c... 40 8.0
36gb|AC008494.8| Homo sapiens chromosome 5 clone CTC-428G20, compl... 40 8.0
37gb|AC087616.3| Homo sapiens chromosome 11, clone RP11-258C7, com... 40 8.0
38gb|AC094095.2| Homo sapiens chromosome 5 clone RP11-115D4, compl... 40 8.0
39gb|AC017016.5|AC017016 Homo sapiens BAC clone RP11-152H13 from 3... 40 8.0
40gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Can... 40 8.0
41gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Canc... 40 8.0
42emb|BX890619.6| Zebrafish DNA sequence from clone CH211-288M1, c... 40 8.0
43gb|AC008585.4|AC008585 Homo sapiens chromosome 5 clone CTC-568C6... 40 8.0
44dbj|BS000059.1| Pan troglodytes chromosome 22 clone:RP43-022N17,... 40 8.0
45dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.0
46gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, comple... 40 8.0
47gb|AC141891.3| Mus musculus BAC clone RP23-378A8 from 6, complet... 40 8.0
48gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosom... 40 8.0
49dbj|AP001256.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 8.0 
>gb|AY105694.1| Zea mays PCO071849 mRNA sequence
          Length = 547

 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                       
Query: 374 gctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatatg 433
           ||||||| || ||||| |||||||||||||||||  |||| ||| |||||||| ||||||
Sbjct: 291 gctatcgatgctggtgatcacaagcctggcaggctctggcagatttggggtttgcatatg 232

                                                                       
Query: 434 tacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgatt 493
           | |||||||| |||||||| ||||| ||||| |||||||| ||||| ||||  || || |
Sbjct: 231 tgcactgatcgcacgtccatatgttactatcatccacacctcggcttgagccacccgact 172

                                                                     
Query: 494 tggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctt 551
           |||| | ||  |  ||||  | ||||||||||||||| || |||||||| ||||||||
Sbjct: 171 tggaactggtgcttgatgctcggttcttgccactcttacttttaccaccgaggctctt 114



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 180 gtcagtggacaaacaatgc-agatacacgaaaacct 214
           |||||| |||||||||| | ||||||||||||||||
Sbjct: 458 gtcagtcgacaaacaatccgagatacacgaaaacct 423
to top
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16,
              complete sequence
          Length = 146313

 Score =  101 bits (51), Expect = 3e-18
 Identities = 147/179 (82%)
 Strand = Plus / Minus

                                                                          
Query: 373    tgctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatat 432
              |||||||| || |||| || |||||||||||||    |||| |||||||||||  |||||
Sbjct: 123164 tgctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatat 123105

                                                                          
Query: 433    gtacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgat 492
              || ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |
Sbjct: 123104 gtgcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtt 123045

                                                                         
Query: 493    ttggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctt 551
              ||||||| || || |||||  ||| |||||| |||||| || ||||  ||||| |||||
Sbjct: 123044 ttggagctggtactggatgctctgctcttgctactcttacttttactgccaagactctt 122986
to top
>emb|AL662938.3|OSJN00138 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30,
             complete sequence
          Length = 88547

 Score =  101 bits (51), Expect = 3e-18
 Identities = 147/179 (82%)
 Strand = Plus / Minus

                                                                         
Query: 373   tgctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatat 432
             |||||||| || |||| || |||||||||||||    |||| |||||||||||  |||||
Sbjct: 18678 tgctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatat 18619

                                                                         
Query: 433   gtacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgat 492
             || ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |
Sbjct: 18618 gtgcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtt 18559

                                                                        
Query: 493   ttggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctt 551
             ||||||| || || |||||  ||| |||||| |||||| || ||||  ||||| |||||
Sbjct: 18558 ttggagctggtactggatgctctgctcttgctactcttacttttactgccaagactctt 18500
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 3e-18
 Identities = 147/179 (82%)
 Strand = Plus / Minus

                                                                            
Query: 373      tgctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatat 432
                |||||||| || |||| || |||||||||||||    |||| |||||||||||  |||||
Sbjct: 24563533 tgctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatat 24563474

                                                                            
Query: 433      gtacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgat 492
                || ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |
Sbjct: 24563473 gtgcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtt 24563414

                                                                           
Query: 493      ttggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctt 551
                ||||||| || || |||||  ||| |||||| |||||| || ||||  ||||| |||||
Sbjct: 24563413 ttggagctggtactggatgctctgctcttgctactcttacttttactgccaagactctt 24563355
to top
>dbj|AK060196.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-F04, full
            insert sequence
          Length = 1838

 Score =  101 bits (51), Expect = 3e-18
 Identities = 147/179 (82%)
 Strand = Plus / Minus

                                                                        
Query: 373  tgctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatat 432
            |||||||| || |||| || |||||||||||||    |||| |||||||||||  |||||
Sbjct: 1421 tgctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatat 1362

                                                                        
Query: 433  gtacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgat 492
            || ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |
Sbjct: 1361 gtgcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtt 1302

                                                                       
Query: 493  ttggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctt 551
            ||||||| || || |||||  ||| |||||| |||||| || ||||  ||||| |||||
Sbjct: 1301 ttggagctggtactggatgctctgctcttgctactcttacttttactgccaagactctt 1243
to top
>gb|BT018114.1| Zea mays clone EL01N0553G12.c mRNA sequence
          Length = 1058

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 146/178 (82%)
 Strand = Plus / Minus

                                                                       
Query: 374 gctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatatg 433
           ||||||| || ||| | ||||| |||||||||||  |||| ||| |||||||| ||||||
Sbjct: 672 gctatcgatgctggcgatcacaggcctggcaggctctggcagatttggggtttgcatatg 613

                                                                       
Query: 434 tacactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgatt 493
           | |||||||| || ||||| ||||| ||||| |||||||| ||| | |||| ||| ||||
Sbjct: 612 tgcactgatcgcatgtccagatgttactatcatccacacctcgggttgagccgccagatt 553

                                                                     
Query: 494 tggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctt 551
           |||| | |   |  |||| |||||||||||||||||| || |||||||| ||||||||
Sbjct: 552 tggaactgctgcttgatgccctgttcttgccactcttacttttaccaccgaggctctt 495



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                 
Query: 178 cagtcagtggacaaacaatgcag-atacacgaaaacct 214
           |||||||| |||||||||| ||| ||||||||||||||
Sbjct: 847 cagtcagtcgacaaacaatccaggatacacgaaaacct 810
to top
>ref|XM_472997.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1770

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 145/177 (81%)
 Strand = Plus / Minus

                                                                        
Query: 375  ctatcggtgttggtggtcacaagcctggcaggccttggccgatctggggtttacatatgt 434
            |||||| || |||| || |||||||||||||    |||| |||||||||||  |||||||
Sbjct: 1770 ctatcgatgctggttgttacaagcctggcagtttctggcagatctggggttagcatatgt 1711

                                                                        
Query: 435  acactgatcacacgtccaaatgttgctatcgtccacaccacggctggagctgcctgattt 494
             ||||| |||||||||||||||||||| || || ||||||||||| ||||  |||| |||
Sbjct: 1710 gcactggtcacacgtccaaatgttgctttcatcgacaccacggctcgagccacctgtttt 1651

                                                                     
Query: 495  ggagccggcaccggatgtcctgttcttgccactcttgctcttaccaccaaggctctt 551
            ||||| || || |||||  ||| |||||| |||||| || ||||  ||||| |||||
Sbjct: 1650 ggagctggtactggatgctctgctcttgctactcttacttttactgccaagactctt 1594
to top
>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete
              sequence
          Length = 176398

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 527    tcttgctcttaccaccaaggct 548
              ||||||||||||||||||||||
Sbjct: 140341 tcttgctcttaccaccaaggct 140362
to top
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1499622 ttagcaactatgtttgcatatg 1499601
to top
>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 527    tcttgctcttaccaccaaggct 548
              ||||||||||||||||||||||
Sbjct: 117010 tcttgctcttaccaccaaggct 117031
to top
>gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence
          Length = 184706

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 527    tcttgctcttaccaccaaggct 548
              ||||||||||||||||||||||
Sbjct: 130520 tcttgctcttaccaccaaggct 130499
to top
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1548875 ttagcaactatgtttgcatatg 1548854
to top
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1514025 ttagcaactatgtttgcatatg 1514004
to top
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1407360 ttagcaactatgtttgcatatg 1407339
to top
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1490738 ttagcaactatgtttgcatatg 1490717
to top
>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 527    tcttgctcttaccaccaaggct 548
              ||||||||||||||||||||||
Sbjct: 124482 tcttgctcttaccaccaaggct 124503
to top
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1473916 ttagcaactatgtttgcatatg 1473895
to top
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1472463 ttagcaactatgtttgcatatg 1472442
to top
>emb|CR382282.9| Zebrafish DNA sequence from clone CH211-208L4 in linkage group 24,
             complete sequence
          Length = 80334

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 276   gcaactatgtttgcatatgttg 297
             ||||||||||||||||||||||
Sbjct: 77974 gcaactatgtttgcatatgttg 77953
to top
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1537792 ttagcaactatgtttgcatatg 1537771
to top
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 273     ttagcaactatgtttgcatatg 294
               ||||||||||||||||||||||
Sbjct: 1425665 ttagcaactatgtttgcatatg 1425644
to top
>gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome 13, complete sequence
          Length = 190600

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 516    gttcttgccactcttgctctt 536
              |||||||||||||||||||||
Sbjct: 150455 gttcttgccactcttgctctt 150435
to top
>gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, complete sequence
          Length = 190817

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 265   aaatatccttagcaactatgt 285
             |||||||||||||||||||||
Sbjct: 60295 aaatatccttagcaactatgt 60315
to top
>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence
          Length = 212083

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 265 aaatatccttagcaactatgt 285
           |||||||||||||||||||||
Sbjct: 322 aaatatccttagcaactatgt 302
to top
>ref|XM_746966.1| Aspergillus fumigatus Af293 ATP-dependent RNA helicase Dbp1
           (Afu4g07660) partial mRNA
          Length = 2025

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 331 ctcgatctgacggagctgaga 351
           |||||||||||||||||||||
Sbjct: 969 ctcgatctgacggagctgaga 949
to top
>emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on chromosome 13, complete
             sequence
          Length = 218075

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 516   gttcttgccactcttgctctt 536
             |||||||||||||||||||||
Sbjct: 72637 gttcttgccactcttgctctt 72617
to top
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    gacctgagaggattcttctc 333
              ||||||||||||||||||||
Sbjct: 402164 gacctgagaggattcttctc 402145
to top
>gb|AE006294.1| Lactococcus lactis subsp. lactis IL1403 section 56 of 218 of the
            complete genome
          Length = 10292

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   aacagcattacaaaaagaaa 54
            ||||||||||||||||||||
Sbjct: 7300 aacagcattacaaaaagaaa 7319
to top
>gb|AC166347.2| Mus musculus BAC clone RP24-87G12 from chromosome 6, complete sequence
          Length = 193181

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   aaacaaaacagagttacaga 124
             ||||||||||||||||||||
Sbjct: 59338 aaacaaaacagagttacaga 59319
to top
>gb|AC069067.17| Homo sapiens 3 BAC RP11-454C18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172213

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    tagcaactatgtttgcatat 293
              ||||||||||||||||||||
Sbjct: 104209 tagcaactatgtttgcatat 104228
to top
>emb|AL079295.1|HS106I20 Human DNA sequence from clone RP1-106I20 on chromosome 22, complete
            sequence
          Length = 149321

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 44   acaaaaagaaaagaacttgt 63
            ||||||||||||||||||||
Sbjct: 6185 acaaaaagaaaagaacttgt 6166
to top
>emb|AL627263.6| Zebrafish DNA sequence from clone RP71-1L9 in linkage group 14 Contains
             part of a novel gene similar to ATP8B1 (ATPase, Class I,
             type 8B, member 1), part of a novel gene similar to MCF2
             (MCF.2 cell line derived transforming sequence) and two
             CpG islands, complete sequence
          Length = 174521

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   aaaacagagttacagatata 128
             ||||||||||||||||||||
Sbjct: 57932 aaaacagagttacagatata 57951
to top
>emb|AL138643.1|ATF7M19 Arabidopsis thaliana DNA chromosome 3, BAC clone F7M19
          Length = 99291

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   agctgagatgttaaacaagg 363
             ||||||||||||||||||||
Sbjct: 41355 agctgagatgttaaacaagg 41336
to top
>emb|CR846095.3| Zebrafish DNA sequence from clone DKEY-209E11 in linkage group 14,
             complete sequence
          Length = 50472

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   aaaacagagttacagatata 128
             ||||||||||||||||||||
Sbjct: 32436 aaaacagagttacagatata 32417
to top
>gb|AC113193.6| Homo sapiens chromosome 11, clone RP11-1026G19, complete sequence
          Length = 182208

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      tgttaatgcattattgaaag 28
              ||||||||||||||||||||
Sbjct: 126275 tgttaatgcattattgaaag 126294
to top
>gb|AC008494.8| Homo sapiens chromosome 5 clone CTC-428G20, complete sequence
          Length = 181800

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    cagcattacaaaaagaaaagaact 60
             ||||||||||||| ||||||||||
Sbjct: 64985 cagcattacaaaacgaaaagaact 65008
to top
>gb|AC087616.3| Homo sapiens chromosome 11, clone RP11-258C7, complete sequence
          Length = 177939

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      tgttaatgcattattgaaag 28
              ||||||||||||||||||||
Sbjct: 113476 tgttaatgcattattgaaag 113457
to top
>gb|AC094095.2| Homo sapiens chromosome 5 clone RP11-115D4, complete sequence
          Length = 162282

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 37     cagcattacaaaaagaaaagaact 60
              ||||||||||||| ||||||||||
Sbjct: 118295 cagcattacaaaacgaaaagaact 118318
to top
>gb|AC017016.5|AC017016 Homo sapiens BAC clone RP11-152H13 from 3, complete sequence
          Length = 180681

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tagcaactatgtttgcatat 293
             ||||||||||||||||||||
Sbjct: 66006 tagcaactatgtttgcatat 65987
to top
>gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 119043

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    caaaacagagttacagatat 127
              ||||||||||||||||||||
Sbjct: 118319 caaaacagagttacagatat 118338
to top
>gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175946

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    caaaacagagttacagatat 127
              ||||||||||||||||||||
Sbjct: 167702 caaaacagagttacagatat 167683
to top
>emb|BX890619.6| Zebrafish DNA sequence from clone CH211-288M1, complete sequence
          Length = 141754

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   aaaacagagttacagatata 128
             ||||||||||||||||||||
Sbjct: 71715 aaaacagagttacagatata 71734
to top
>gb|AC008585.4|AC008585 Homo sapiens chromosome 5 clone CTC-568C6, complete sequence
          Length = 86152

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 37   cagcattacaaaaagaaaagaact 60
            ||||||||||||| ||||||||||
Sbjct: 1828 cagcattacaaaacgaaaagaact 1851
to top
>dbj|BS000059.1| Pan troglodytes chromosome 22 clone:RP43-022N17, map 22, complete
             sequences
          Length = 127718

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   aatatccttagcaactatgt 285
             ||||||||||||||||||||
Sbjct: 44638 aatatccttagcaactatgt 44657
to top
>dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, section 22/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    aatatccttagcaactatgt 285
              ||||||||||||||||||||
Sbjct: 104227 aatatccttagcaactatgt 104246
to top
>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence
          Length = 215490

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    acatatgtacactgatcaca 446
              ||||||||||||||||||||
Sbjct: 205357 acatatgtacactgatcaca 205376
to top
>gb|AC141891.3| Mus musculus BAC clone RP23-378A8 from 6, complete sequence
          Length = 152261

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    aaacaaaacagagttacaga 124
              ||||||||||||||||||||
Sbjct: 101336 aaacaaaacagagttacaga 101355
to top
>gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosome 6, complete sequence
          Length = 197402

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   acatatgtacactgatcaca 446
             ||||||||||||||||||||
Sbjct: 52260 acatatgtacactgatcaca 52279
to top
>dbj|AP001256.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B732H1,
              LL56-APP region, complete sequence
          Length = 204699

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    aatatccttagcaactatgt 285
              ||||||||||||||||||||
Sbjct: 187647 aatatccttagcaactatgt 187666


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,720,941
Number of Sequences: 3902068
Number of extensions: 5720941
Number of successful extensions: 106111
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105809
Number of HSP's gapped (non-prelim): 297
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top