ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41b13 |
|---|---|
| Clone Library Name | barley_pub |
>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 657 Score = 33.1 bits (74), Expect = 0.42 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +2 Query: 83 IKKKSYRAKQNTLLNALHQS*QIHHLQKMQ-GKGKTSRADNAGGFLRHRHPAGHHVEEG 256 +K+K + ++ L LHQ+ I LQK++ G + + AGGF R H G H+ +G Sbjct: 225 LKEKIAQLEEQIKLEELHQA-LISKLQKLKTGNETVTSPETAGGFSRTPHWPGQHIPKG 282
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 32.7 bits (73), Expect = 0.54 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Frame = +2 Query: 155 HLQKMQGKGKTSRADNAGGFLRHRHPAG-------------HHVEEGVEAAFHQVVAEHS 295 H Q +G S ++GGF R+R P G HH + A Q ++ Sbjct: 1174 HPQHFPPRGFQSNHPHSGGFPRYRPPQGMRYSYHPPPQPSYHHYQRTPYYACPQSFSDWQ 1233 Query: 296 QGGH-QGAPSEPSSSQP 343 + H QG+PS P +SQP Sbjct: 1234 RPLHPQGSPSGPPASQP 1250
>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp24; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 656 Score = 32.7 bits (73), Expect = 0.54 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +2 Query: 83 IKKKSYRAKQNTLLNALHQS*QIHHLQKMQ-GKGKTSRADNAGGFLRHRHPAGHHVEEG 256 +K+K + ++ L LHQ+ I LQK++ G + D AGG R H G H+ +G Sbjct: 224 LKEKIAQLEEQIKLEELHQA-LISKLQKLKTGNETVTHPDTAGGLSRTPHWPGQHIPKG 281
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 6/77 (7%) Frame = +2 Query: 221 HRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGA------PSEPSSSQPVLVLYHIS*AG*I 382 H HP HH E E H EH + H+ P P +H+ Sbjct: 63 HHHPEEHH-EPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHL------ 115 Query: 383 QGHHHRHHMGLPCSHHK 433 GHHH HH HH+ Sbjct: 116 -GHHHHHHHAAHHHHHE 131 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/74 (27%), Positives = 23/74 (31%) Frame = +2 Query: 209 GFLRHRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQG 388 G H H A HH E H A H + P +H+ Sbjct: 116 GHHHHHHHAAHH-HHHEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHHHHAP 174 Query: 389 HHHRHHMGLPCSHH 430 HHH HH P HH Sbjct: 175 HHHHHHHHAPHHHH 188 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/70 (30%), Positives = 23/70 (32%) Frame = +2 Query: 221 HRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR 400 H HP HH G +H A H H AP +H HHH Sbjct: 156 HHHPWFHHHHLG----YHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHA---PHHHH 208 Query: 401 HHMGLPCSHH 430 HH P HH Sbjct: 209 HHHHAPHHHH 218
>OTX1L_BRARE (Q90267) Homeobox protein Otx1l (ZOTX3)| Length = 338 Score = 30.8 bits (68), Expect = 2.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 362 IS*AG*IQGHHHRHHMGLPCSHH 430 +S A + GHHH HH+G HH Sbjct: 262 LSTAAAVSGHHHPHHIGQSSGHH 284
>HM8_XENLA (P14837) Homeobox protein 8 (XlHbox-8)| Length = 271 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 326 PSSSQPVLVLYHIS*AG*IQGHHHRHHMGLPCSHHKV 436 P S +P++ H HHH HH G+P HH++ Sbjct: 68 PISEEPIVPHLHHH-----HYHHHHHHPGIPHPHHQM 99
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 30.4 bits (67), Expect = 2.7 Identities = 29/107 (27%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Frame = +2 Query: 128 ALHQS*QIHHLQKMQGKGKTSRADNAGGFLRHRHPAG-----HHVEEGVEAAFHQVVAEH 292 A H S HH G + + PAG HH G + H Sbjct: 224 AHHGSDLSHHSASESTSGHRGQGSHTSPSALSPTPAGVSADEHHNGSGTGGGAGEA-DHH 282 Query: 293 SQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHRHHMGLPCSHHK 433 S H PS P P +H Q HHH H + LP HH+ Sbjct: 283 STTEHHAPPSHPQQQHP----HH-------QQHHHPHLL-LPQQHHQ 317
>BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)| Length = 645 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/78 (24%), Positives = 30/78 (38%) Frame = +2 Query: 233 AGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHRHHMG 412 AG AA +A S GG +G+P++ Q + + HHH H Sbjct: 66 AGAAAASAAAAAAAAALAAASSGGGRGSPTDSEREQSL-----------VAQHHHHHQQQ 114 Query: 413 LPCSHHKVEEDS*ELLQA 466 HH+ ++ + QA Sbjct: 115 QQHHHHQQQQQQQQHQQA 132
>PSBB_EUGGR (P14813) Photosystem II P680 chlorophyll A apoprotein (CP-47| protein) Length = 508 Score = 29.6 bits (65), Expect = 4.6 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -3 Query: 306 WPPWLCSATTWWNAASTPSSTW*PAGWRW 220 W ++ S T W+ +ASTP + P ++W Sbjct: 247 WSAFVVSGTMWYGSASTPIELFGPTRYQW 275
>MEOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specific homeobox)| Length = 303 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Frame = +2 Query: 239 HHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR-HHMGL 415 H +G+ +A H + H P +SS ++ + + G HHR HH Sbjct: 13 HATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHH 72 Query: 416 PCSHHKVEEDS*ELLQA 466 HH ++ + LQ+ Sbjct: 73 HHHHHHHQQQQHQALQS 89
>MEOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2)| Length = 303 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Frame = +2 Query: 239 HHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR-HHMGL 415 H +G+ +A H + H P +SS ++ + + G HHR HH Sbjct: 13 HATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHH 72 Query: 416 PCSHHKVEEDS*ELLQA 466 HH ++ + LQ+ Sbjct: 73 HHHHHHHQQQQHQALQS 89
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 29.6 bits (65), Expect = 4.6 Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 21/78 (26%) Frame = +2 Query: 239 HHVEEGVEAAFHQVVAEHSQGGHQ-----------------GAPSEPSSSQPVLVLYHI- 364 HHV H V A H+ GGH APS P+S H+ Sbjct: 121 HHVAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAPAS--------HLG 172 Query: 365 ---S*AG*IQGHHHRHHM 409 + A I GH H HH+ Sbjct: 173 GSSTAASSIHGHAHAHHV 190
>MAM_DROME (P21519) Neurogenic protein mastermind| Length = 1594 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 Query: 67 QVSGVYQEKVLQGKTKHAPKRTPSKLTNPSPTKDARQ 177 Q + V Q++ L+ K K A K+T KL +PS +Q Sbjct: 166 QETTVLQKRFLESKNKRAAKKTDKKLPDPSQQHQQQQ 202
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 29.3 bits (64), Expect = 6.0 Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Frame = +2 Query: 221 HRHPAGHHVEEGVEAAFHQVVAEHSQG--GHQGAPSEPSSSQPVLVLYHIS*AG*IQGHH 394 H H HH + A HQ H G HQ P Q V G Q HH Sbjct: 66 HHHHHHHHQHQAPHQAPHQAHHHHHHGEVNHQA----PQVHQQV--------HGQDQAHH 113 Query: 395 HRHH 406 H HH Sbjct: 114 HHHH 117
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 29.3 bits (64), Expect = 6.0 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +2 Query: 383 QGHHHRHHMGLPCSHHKVEEDS 448 +GHHH HH SH K DS Sbjct: 336 RGHHHHHHEAADSSHGKKARDS 357
>RECF_XANCP (Q8PEH3) DNA replication and repair protein recF| Length = 368 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Frame = +3 Query: 147 KSITYKRCKAREKLVGPITPVASFATAIPP-----VTTSRRGWRRHSTRLLQNIAKAAIR 311 +++T +R + E+L + PVA TAI P T GWRRH L + A R Sbjct: 190 ETLTSRRLQYLERLQERLVPVA---TAIAPSLGLSALTFAPGWRRHEVSLADALLLA--R 244 Query: 312 EHHRNHPHPSR 344 E R + + S+ Sbjct: 245 ERDRQNGYTSQ 255
>RECF_XANC8 (Q4V0S6) DNA replication and repair protein recF| Length = 368 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Frame = +3 Query: 147 KSITYKRCKAREKLVGPITPVASFATAIPP-----VTTSRRGWRRHSTRLLQNIAKAAIR 311 +++T +R + E+L + PVA TAI P T GWRRH L + A R Sbjct: 190 ETLTSRRLQYLERLQERLVPVA---TAIAPSLGLSALTFAPGWRRHEVSLADALLLA--R 244 Query: 312 EHHRNHPHPSR 344 E R + + S+ Sbjct: 245 ERDRQNGYTSQ 255
>SRP54_ECOLI (P0AGD7) Signal recognition particle protein (Fifty-four homolog)| (p48) Length = 453 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 107 KQNTLLNALHQS*QIHHLQKMQGKGKTSRADNAGGFLRHRH 229 ++N LN Q + + +QG GKT+ G FLR +H Sbjct: 88 EENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH 128
>SRP54_ECOL6 (P0AGD8) Signal recognition particle protein (Fifty-four homolog)| Length = 453 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 107 KQNTLLNALHQS*QIHHLQKMQGKGKTSRADNAGGFLRHRH 229 ++N LN Q + + +QG GKT+ G FLR +H Sbjct: 88 EENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH 128
>SRP54_ECO57 (P0AGD9) Signal recognition particle protein (Fifty-four homolog)| Length = 453 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 107 KQNTLLNALHQS*QIHHLQKMQGKGKTSRADNAGGFLRHRH 229 ++N LN Q + + +QG GKT+ G FLR +H Sbjct: 88 EENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH 128
>MEOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth| arrest-specific homeobox) Length = 304 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%) Frame = +2 Query: 239 HHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR--HHMG 412 H +G+ +A H + H P +SS ++ + + G HHR HH Sbjct: 13 HATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHH 72 Query: 413 LPCSHHKVEEDS*ELLQ 463 HH ++ + LQ Sbjct: 73 HHHHHHHHQQQQHQALQ 89
>LACY_LACHE (Q7WTB2) Lactose permease (Lactose-proton symporter) (Lactose| transport protein) (Lactose transporter) [Includes: Putative phosphotransferase enzyme IIA component (EC 2.7.1.-) (Putative PTS system EIIA component)] Length = 638 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -2 Query: 403 VPMVVALDSTSL*YMVEDQHRLG*-GWFRWCSLMAALAMFCNNLV 272 +P++V T + Y V +H G GWF + ++++ALA+ C +V Sbjct: 178 LPIIVVPLVTGVTYAVTGKHEEGAPGWFAFAAVISALAIICALIV 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,448,798 Number of Sequences: 219361 Number of extensions: 1387343 Number of successful extensions: 4901 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4478 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4791 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
