ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471745.1| Oryza sativa (japonica cultivar-group), predic... 44 0.28
2ref|XM_471744.1| Oryza sativa (japonica cultivar-group), predic... 44 0.28
3emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 44 0.28
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
5dbj|AK108495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
6ref|XM_471738.1| Oryza sativa (japonica cultivar-group), predic... 42 1.1
7emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
8dbj|AK067041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
9gb|AC102751.14| Mus musculus chromosome 19, clone RP24-531N3, co... 40 4.3
10gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
11emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chro... 40 4.3
12gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosom... 40 4.3
13emb|CR394564.8| Zebrafish DNA sequence from clone DKEY-1K1 in li... 40 4.3
14emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in ... 40 4.3
15emb|BX927202.7| Zebrafish DNA sequence from clone CH211-275P14 i... 40 4.3
16emb|BX088529.6| Zebrafish DNA sequence from clone CH211-286H12, ... 40 4.3
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
19emb|AL845364.4| Mouse DNA sequence from clone RP23-301M3 on chro... 40 4.3 
>ref|XM_471745.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2814

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 160  atgaactcttgctccaagctgtagca 185
            |||||||||||||||||||| |||||
Sbjct: 2789 atgaactcttgctccaagctatagca 2764
to top
>ref|XM_471744.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1611

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 160  atgaactcttgctccaagctgtagca 185
            |||||||||||||||||||| |||||
Sbjct: 1586 atgaactcttgctccaagctatagca 1561
to top
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 160   atgaactcttgctccaagctgtagca 185
             |||||||||||||||||||| |||||
Sbjct: 90968 atgaactcttgctccaagctatagca 90943



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 160   atgaactcttgctccaagctgtagca 185
             |||||||||||||||||||| |||||
Sbjct: 81286 atgaactcttgctccaagctatagca 81261



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 163   aactcttgctccaagctgtagcaattttggttcctttgaga 203
             ||||||||||||||||| ||||| || ||| | ||||||||
Sbjct: 34064 aactcttgctccaagctatagcatttgtggctactttgaga 34024
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 160      atgaactcttgctccaagctgtagca 185
                |||||||||||||||||||| |||||
Sbjct: 13977088 atgaactcttgctccaagctatagca 13977063



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 160      atgaactcttgctccaagctgtagca 185
                |||||||||||||||||||| |||||
Sbjct: 13967406 atgaactcttgctccaagctatagca 13967381



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 163      aactcttgctccaagctgtagcaattttggttcctttgaga 203
                ||||||||||||||||| ||||| || ||| | ||||||||
Sbjct: 13920184 aactcttgctccaagctatagcatttgtggctactttgaga 13920144
to top
>dbj|AK108495.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G09, full
           insert sequence
          Length = 1228

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 160 atgaactcttgctccaagctgtagca 185
           |||||||||||||||||||| |||||
Sbjct: 832 atgaactcttgctccaagctatagca 807
to top
>ref|XM_471738.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2424

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 163  aactcttgctccaagctgtagcaattttggttcctttgaga 203
            ||||||||||||||||| ||||| || ||| | ||||||||
Sbjct: 2396 aactcttgctccaagctatagcatttgtggctactttgaga 2356
to top
>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03,
              complete sequence
          Length = 175555

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 163    aactcttgctccaagctgtagcaattttggttcctttgaga 203
              ||||||||||||||||| ||||| || ||| | ||||||||
Sbjct: 133847 aactcttgctccaagctatagcatttgtggctactttgaga 133807
to top
>dbj|AK067041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092H22, full
            insert sequence
          Length = 3220

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 163  aactcttgctccaagctgtagcaattttggttcctttgaga 203
            ||||||||||||||||| ||||| || ||| | ||||||||
Sbjct: 2774 aactcttgctccaagctatagcatttgtggctactttgaga 2734
to top
>gb|AC102751.14| Mus musculus chromosome 19, clone RP24-531N3, complete sequence
          Length = 178150

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ttttggttcctttgagaagc 206
             ||||||||||||||||||||
Sbjct: 79197 ttttggttcctttgagaagc 79178
to top
>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    aaaggcagacaaccacacat 113
             ||||||||||||||||||||
Sbjct: 13263 aaaggcagacaaccacacat 13282
to top
>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete
             sequence
          Length = 209619

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   caattttggttcctttgaga 203
             ||||||||||||||||||||
Sbjct: 37688 caattttggttcctttgaga 37707
to top
>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete sequence
          Length = 209280

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    caattttggttcctttgaga 203
              ||||||||||||||||||||
Sbjct: 107436 caattttggttcctttgaga 107455
to top
>emb|CR394564.8| Zebrafish DNA sequence from clone DKEY-1K1 in linkage group 8, complete
             sequence
          Length = 227475

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    acattatttactgcattata 33
             ||||||||||||||||||||
Sbjct: 94598 acattatttactgcattata 94579
to top
>emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in linkage group 12,
             complete sequence
          Length = 155303

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tcaataaaaaaggcagacaa 105
             ||||||||||||||||||||
Sbjct: 92920 tcaataaaaaaggcagacaa 92939
to top
>emb|BX927202.7| Zebrafish DNA sequence from clone CH211-275P14 in linkage group 8,
             complete sequence
          Length = 97308

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    acattatttactgcattata 33
             ||||||||||||||||||||
Sbjct: 73369 acattatttactgcattata 73388
to top
>emb|BX088529.6| Zebrafish DNA sequence from clone CH211-286H12, complete sequence
          Length = 178667

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tcaataaaaaaggcagacaa 105
             ||||||||||||||||||||
Sbjct: 85750 tcaataaaaaaggcagacaa 85731
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 94       aaaggcagacaaccacacat 113
                ||||||||||||||||||||
Sbjct: 22456118 aaaggcagacaaccacacat 22456137
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 94       aaaggcagacaaccacacat 113
                ||||||||||||||||||||
Sbjct: 22766029 aaaggcagacaaccacacat 22766048
to top
>emb|AL845364.4| Mouse DNA sequence from clone RP23-301M3 on chromosome 4, complete
             sequence
          Length = 205273

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   cacacattaatgttgagaac 126
             ||||||||||||||||||||
Sbjct: 46642 cacacattaatgttgagaac 46661


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,375,056
Number of Sequences: 3902068
Number of extensions: 2375056
Number of successful extensions: 43325
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43258
Number of HSP's gapped (non-prelim): 67
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top