ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40l24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEU3_PICJA (P08791) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 29 3.7
2LCR74_ARATH (Q9FFP8) Putative low-molecular-weight cysteine-rich... 28 8.3
3YD3B_SCHPO (Q10275) Hypothetical protein C13G7.11 in chromosome I 28 8.3

>LEU3_PICJA (P08791) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 363

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 70  LYVKFRPCNVCSETMVDVTGSTGETLGALTLVV 168
           LY   RPCN  SE+++D++    E +     VV
Sbjct: 101 LYANLRPCNFASESLLDLSPIKAEVVKGTDFVV 133



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>LCR74_ARATH (Q9FFP8) Putative low-molecular-weight cysteine-rich protein LCR74|
           precursor
          Length = 73

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 153 RSQGFTGGACHIHHRFAAYITR 88
           R++GF+GG CH  HR   Y TR
Sbjct: 51  RNEGFSGGRCHGFHR-RCYCTR 71



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>YD3B_SCHPO (Q10275) Hypothetical protein C13G7.11 in chromosome I|
          Length = 269

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 134 VEPVTSTIVSLHTLHGLNFTYRYCFRGFVNKCNN 33
           +EP+ +T   LH    + F +RY F G+ N   N
Sbjct: 58  IEPIDNTSFFLHPFKKIRFWWRYLFYGWWNLKKN 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,196,455
Number of Sequences: 219361
Number of extensions: 641936
Number of successful extensions: 1513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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