ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal40l21 |
|---|---|
| Clone Library Name | barley_pub |
>ALLP_BACSU (P94575) Probable allantoin permease (Allantoin transport protein)| Length = 490 Score = 68.9 bits (167), Expect = 1e-11 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 1/161 (0%) Frame = -1 Query: 651 AIITTNIAANVVAPANTLVALAPQXXXXXXXXXXXXXXXXXLQPWRLLSSSES-FVFTWL 475 A I+ N+AAN+V+PA + P+ PW+L+ S+ S + F L Sbjct: 320 ATISVNVAANIVSPAYDIANALPKYINFKRGSFITALLALFTVPWKLMESATSVYAFLGL 379 Query: 474 LGNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYFQXXXXXXXXXXXXXXXXX 295 +G ++GP+ G+++AD++I+R+ L VD LYSE Y+ Sbjct: 380 IGG--MLGPVAGVMMADYFIIRKRELSVDDLYSETGRYVYW--------KGYNYRAFAAT 429 Query: 294 XXXXFLHKVGVLPTMSKALVVAYDNAWFVSFFVAGATYCLL 172 + +G+ + K+L YD +WFV ++ Y +L Sbjct: 430 MLGALISLIGMYVPVLKSL---YDISWFVGVLISFLFYIVL 467
>FUR4_SCHPO (Q10279) Uracil permease| Length = 581 Score = 64.3 bits (155), Expect = 3e-10 Identities = 36/101 (35%), Positives = 50/101 (49%) Frame = -1 Query: 651 AIITTNIAANVVAPANTLVALAPQXXXXXXXXXXXXXXXXXLQPWRLLSSSESFVFTWLL 472 A + NIAAN V+ N L AL P + PW LLSS+ +F T+L Sbjct: 354 AQLGVNIAANSVSAGNDLSALLPTVINVRRGGYIASIIALCMCPWNLLSSNNNFT-TYLS 412 Query: 471 GNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 349 + + G+++AD+Y VR+ + V LYS SPYYF Sbjct: 413 SYSVFLSSFAGVIIADYYFVRKGLIRVAPLYSSSSSSPYYF 453
>ALLP_ECOLI (P75712) Putative allantoin permease (Allantoin transport protein)| Length = 484 Score = 59.7 bits (143), Expect = 7e-09 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 1/166 (0%) Frame = -1 Query: 645 ITTNIAANVVAPANTLVALAPQXXXXXXXXXXXXXXXXXLQPWRLLSSSES-FVFTWLLG 469 I+TN N++ + A+AP + PW+L+ + +S ++F ++G Sbjct: 322 ISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIG 381 Query: 468 NAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYFQXXXXXXXXXXXXXXXXXXX 289 ++GP+ G+++A +++V R +++D LY+ D YY Sbjct: 382 G--MLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLG 439 Query: 288 XXFLHKVGVLPTMSKALVVAYDNAWFVSFFVAGATYCLLRLQRGVE 151 F+H + L +S WFV VA A Y LL+ + E Sbjct: 440 GKFIHFMEPLSRVS----------WFVGVIVAFAAYALLKKRTTAE 475
>FUI1_YEAST (P38196) Uridine permease| Length = 639 Score = 53.5 bits (127), Expect = 5e-07 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 1/156 (0%) Frame = -1 Query: 636 NIAANVVAPANTLVALAPQXXXXXXXXXXXXXXXXXLQPWRLLSSSESFVFTWLLGNAAL 457 N++ N + L AL P+ + PW LLSSS F T L A Sbjct: 434 NLSGNSIPAGTDLTALLPKFINIRRGSYICALISLAICPWDLLSSSSKFT-TALAAYAVF 492 Query: 456 MGPIGGIVLADHYIVRRTALDVDALYSEEDDSPY-YFQXXXXXXXXXXXXXXXXXXXXXF 280 + I G++ AD++IVR+ +++ Y+++ S Y Y + F Sbjct: 493 LSAIAGVISADYFIVRKGYVNIFHCYTDKPGSYYMYNKYGTNWRAVVAYIFGIAPNFAGF 552 Query: 279 LHKVGVLPTMSKALVVAYDNAWFVSFFVAGATYCLL 172 L VGV + A+ V Y N +FV + +A +YC+L Sbjct: 553 LGSVGVSVPIG-AMKVYYLN-YFVGYLLAALSYCIL 586
>FUR4_YEAST (P05316) Uracil permease| Length = 633 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/101 (25%), Positives = 48/101 (47%) Frame = -1 Query: 651 AIITTNIAANVVAPANTLVALAPQXXXXXXXXXXXXXXXXXLQPWRLLSSSESFVFTWLL 472 A + TNI+AN ++ + A+ P+ + PW L+++S F L Sbjct: 412 AQLGTNISANSLSCGTDMSAIFPKFINIKRGSLFCAAMALCICPWNLMATSSKFTMA-LS 470 Query: 471 GNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 349 A + I G+V +D+++VRR + + +YS + S Y + Sbjct: 471 AYAIFLSSIAGVVCSDYFVVRRGYIKLTHIYSHQKGSFYMY 511
>DAL4_YEAST (Q04895) Allantoin permease (Allantoin transport protein)| Length = 635 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 1/102 (0%) Frame = -1 Query: 651 AIITTNIAANVVAPANTLVALAPQXXXXXXXXXXXXXXXXXLQPWRLLSSSESFVFTWLL 472 A + TNI+AN +A + AL P+ + PW L++SS F T L Sbjct: 414 AQLGTNISANSLACGADMTALFPRYINIRRGSLFCVAMALCICPWNLMASSSKF--TSAL 471 Query: 471 GNAAL-MGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 349 G A+ + I G++ AD+++VRR + + L+ + S Y F Sbjct: 472 GAYAIFLSSIAGVICADYFVVRRGYVKLTHLFLAQKGSFYMF 513
>UBP20_HUMAN (Q9Y2K6) Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.1.2.15)| (Ubiquitin thioesterase 20) (Ubiquitin-specific-processing protease 20) (Deubiquitinating enzyme 20) Length = 913 Score = 33.5 bits (75), Expect = 0.56 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +1 Query: 427 REHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGERECL 582 R+ D+SD +R P EDE L+ R +GD + R G + E E L Sbjct: 261 RDSDSSDTDEKREGDRSPSEDEFLSCDSSSDRGEGDGQGRGGGSSQAETELL 312
>Y2357_CORGL (P0C1E6) Probable GTP-binding protein Cgl2357/cg2589| Length = 501 Score = 31.2 bits (69), Expect = 2.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 133 TVLSFHFNPSLETEQAVGGAGDEETDEPG 219 T+L FHF+P ++ E+ GAGD G Sbjct: 56 TLLDFHFHPHVKAERGANGAGDHRNGARG 84
>IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2| Length = 841 Score = 30.4 bits (67), Expect = 4.8 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = +1 Query: 373 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQ 543 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Q Sbjct: 86 VRKKKVFVQRSPEEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARSQPAASQ 142
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/71 (25%), Positives = 35/71 (49%) Frame = +2 Query: 425 SASTMPPIGPMSAAFPSSQVKTKLSLELSSRHGCKAMPSSAVASAPLANVNVCGASATRV 604 SA++ P +++ PSS + S S+ S++ +SAP ++ + AS++ Sbjct: 472 SAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSA 531 Query: 605 FAGATTLAAML 637 + ATT A + Sbjct: 532 SSAATTAATTI 542
>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 30.0 bits (66), Expect = 6.2 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = +1 Query: 427 REHDASDRPHERRVSEQPGEDEALAGAEQ----PPRLQGDAEQRRGERTLGERECLRRER 594 R S+RPHE + G+D+ G E+ P ++ RG R C RR Sbjct: 5 RMRSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHHRRRRCSRRRL 64 Query: 595 HQ 600 H+ Sbjct: 65 HR 66
>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 30.0 bits (66), Expect = 6.2 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = +1 Query: 427 REHDASDRPHERRVSEQPGEDEALAGAEQ----PPRLQGDAEQRRGERTLGERECLRRER 594 R S+RPHE + G+D+ G E+ P ++ RG R C RR Sbjct: 5 RMRSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHHRRRRCSRRRL 64 Query: 595 HQ 600 H+ Sbjct: 65 HR 66
>DPO3A_STRCO (Q9Z618) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1179 Score = 29.6 bits (65), Expect = 8.1 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 4/23 (17%) Frame = +1 Query: 184 GGAGDEETDEPG----VVIGHDE 240 GG GDE++DEPG VV G DE Sbjct: 946 GGMGDEQSDEPGFGLDVVFGEDE 968
>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle| protein 1) Length = 285 Score = 29.6 bits (65), Expect = 8.1 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Frame = +1 Query: 430 EHDASDRPHERRVS------EQPGEDEALAGAEQPPRLQGDAEQRRGERTLGE 570 EH + ++P + ++S EQP + A EQP Q E GE++LGE Sbjct: 132 EHASGEQPSDEQLSGEHASGEQPSGEHA--SGEQPSGEQPSGEHASGEQSLGE 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,899,583 Number of Sequences: 219361 Number of extensions: 1136478 Number of successful extensions: 4271 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3846 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4254 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
