ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41a20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chl... 97 1e-20
2PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chl... 94 1e-19
3PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chl... 84 1e-16
4PSAN_VOLCA (Q9SBN5) Photosystem I reaction center subunit N, chl... 47 1e-05
5SYI_PROMM (Q7TUN3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 8.4
6LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor ... 28 8.4

>PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N)
          Length = 145

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 41/46 (89%), Positives = 41/46 (89%)
 Frame = -2

Query: 217 CKFPYNFTXCQXLXKXXKVPFITDDLEIECEGKEKFKCGSNVFWKW 80
           CKFPYNFT CQ L K  KVPFITDDLEIECEGKEKFKCGSNVFWKW
Sbjct: 100 CKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145



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>PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N) (Fragment)
          Length = 112

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 39/46 (84%), Positives = 41/46 (89%)
 Frame = -2

Query: 217 CKFPYNFTXCQXLXKXXKVPFITDDLEIECEGKEKFKCGSNVFWKW 80
           C+FPYNFT CQ L K  KVPFI+DDLEIECEGKEKFKCGSNVFWKW
Sbjct: 67  CQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112



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>PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N)
          Length = 171

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = -2

Query: 217 CKFPYNFTXCQXLXKXXKVPFITDDLEIECEGKEKFKCGSNVFWKW 80
           CKFP NFT CQ L K  KVPFI++D+ +ECEGK+K+KCGSNVFWKW
Sbjct: 126 CKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171



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>PSAN_VOLCA (Q9SBN5) Photosystem I reaction center subunit N, chloroplast|
           precursor (PSI-N)
          Length = 139

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -2

Query: 217 CKFPYNFTXCQXLXKXXKVPFITDDLEIECEGKEKFKCGS 98
           C+FP NF  C+ L     V +I +DL+IECEGK+   CGS
Sbjct: 93  CQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132



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>SYI_PROMM (Q7TUN3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 968

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  TSRYSLTDIHQHSPYRPASPFPE 91
           TSRY L ++H   P R A P PE
Sbjct: 690 TSRYLLGNLHDFDPERDAIPVPE 712



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>LIFR_RAT (O70535) Leukemia inhibitory factor receptor precursor (LIF|
           receptor) (LIF-R) (CD118 antigen)
          Length = 1093

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 115 KFKCGSNVFWKW*SWS 68
           + +C S  FWKW  WS
Sbjct: 504 RVRCSSETFWKWSKWS 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,199,382
Number of Sequences: 219361
Number of extensions: 243051
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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