ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41a14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
2dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
3dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
4dbj|AK100759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
5dbj|AK058211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
6gb|BT017717.1| Zea mays clone EL01N0447A02.c mRNA sequence 46 0.14
7emb|AL158200.17| Human DNA sequence from clone RP11-278E11 on ch... 46 0.14
8gb|AY105032.1| Zea mays PCO143982 mRNA sequence 46 0.14
9gb|AE006198.1| Pasteurella multocida subsp. multocida str. Pm70 ... 44 0.55
10emb|AL356983.33| Human DNA sequence from clone RP3-441G21 on chr... 44 0.55
11gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic... 42 2.2
12emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encodi... 42 2.2
13gb|AC114771.3| Homo sapiens BAC clone RP11-425I13 from 4, comple... 42 2.2
14gb|AY893878.1| Synthetic construct Homo sapiens clone FLH127889.... 42 2.2
15gb|AY893430.1| Synthetic construct Homo sapiens clone FLH127799.... 42 2.2
16gb|AC004228.2|AC004228 Homo sapiens Chromosome 11q12.2 PAC clone... 42 2.2
17dbj|AP002380.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
18gb|AC004770.1|AC004770 Homo sapiens chromosome 11, BAC CIT-HSP-3... 42 2.2
19gb|U73629.1|HSU73629 Human chromosome 11 114g8 cosmid, complete ... 42 2.2
20gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.6
21gb|BT017618.1| Zea mays clone EL01N0434H04.c mRNA sequence 40 8.6
22gb|AY644454.1| Fibropapilloma-associated turtle herpesvirus uniq... 40 8.6
23gb|AY646915.1| Fibropapilloma-associated turtle herpesvirus stra... 40 8.6
24gb|AY646914.1| Fibropapilloma-associated turtle herpesvirus stra... 40 8.6
25gb|AY646913.1| Fibropapilloma-associated turtle herpesvirus stra... 40 8.6
26gb|AY646912.1| Fibropapilloma-associated turtle herpesvirus stra... 40 8.6
27gb|AY646910.1| Fibropapilloma-associated turtle herpesvirus stra... 40 8.6
28gb|AY646909.1| Fibropapilloma-associated turtle herpesvirus stra... 40 8.6
29emb|AL157695.14| Human DNA sequence from clone RP11-42I11 on chr... 40 8.6
30gb|AC010186.6| Homo sapiens 12p12-21.3-21.8 BAC RP11-705C15 (Ros... 40 8.6
31gb|AF399011.1| Pseudomonas phage phiKZ, complete genome 40 8.6
32gb|AF269475.1|AF269475 Staphylococcus epidermidis strain SR1 clo... 40 8.6
33gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 8.6
34gb|AC098586.3| Homo sapiens BAC clone RP11-109F18 from 4, comple... 40 8.6
35gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C... 40 8.6
36gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B... 40 8.6
37gb|AC083810.16| Homo sapiens 12 BAC RP11-809N1 (Roswell Park Can... 40 8.6
38gb|AF270186.1|AF270186 Staphylococcus epidermidis strain SR1 clo... 40 8.6
39gb|AF270089.1|AF270089 Staphylococcus epidermidis strain SR1 clo... 40 8.6
40gb|AF269995.1|AF269995 Staphylococcus epidermidis strain SR1 clo... 40 8.6
41dbj|AK202064.1| Mus musculus cDNA, clone:Y1G0140E10, strand:plus... 40 8.6
42gb|DQ163920.1| Bacteriophage SD1-M, complete genome 40 8.6
43emb|AL136332.5|CNS01DW4 Human chromosome 14 DNA sequence BAC R-8... 40 8.6
44emb|AL159141.5|CNS01RGQ Human chromosome 14 DNA sequence BAC R-8... 40 8.6
45gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p... 40 8.6 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/59 (91%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                           
Query: 570      aacatggagtaacccggcgcaggcgtatttgaactgtctcagatcatgcccctgcgccg 628
                |||||||||||||| | |||||||||| |||||||| |||| |||||||||||||||||
Sbjct: 20486641 aacatggagtaaccag-cgcaggcgtacttgaactgcctcaaatcatgcccctgcgccg 20486584
to top
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1254_E07
          Length = 124028

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/59 (91%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                       
Query: 570  aacatggagtaacccggcgcaggcgtatttgaactgtctcagatcatgcccctgcgccg 628
            |||||||||||||| | |||||||||| |||||||| |||| |||||||||||||||||
Sbjct: 4288 aacatggagtaaccag-cgcaggcgtacttgaactgcctcaaatcatgcccctgcgccg 4231
to top
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1531_B07
          Length = 115245

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/59 (91%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                         
Query: 570    aacatggagtaacccggcgcaggcgtatttgaactgtctcagatcatgcccctgcgccg 628
              |||||||||||||| | |||||||||| |||||||| |||| |||||||||||||||||
Sbjct: 114780 aacatggagtaaccag-cgcaggcgtacttgaactgcctcaaatcatgcccctgcgccg 114723
to top
>dbj|AK100759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119B10, full
           insert sequence
          Length = 1847

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/59 (91%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 570 aacatggagtaacccggcgcaggcgtatttgaactgtctcagatcatgcccctgcgccg 628
           |||||||||||||| | |||||||||| |||||||| |||| |||||||||||||||||
Sbjct: 310 aacatggagtaaccag-cgcaggcgtacttgaactgcctcaaatcatgcccctgcgccg 253
to top
>dbj|AK058211.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-C06, full
           insert sequence
          Length = 930

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/59 (91%), Gaps = 1/59 (1%)
 Strand = Plus / Minus

                                                                      
Query: 570 aacatggagtaacccggcgcaggcgtatttgaactgtctcagatcatgcccctgcgccg 628
           |||||||||||||| | |||||||||| |||||||| |||| |||||||||||||||||
Sbjct: 300 aacatggagtaaccag-cgcaggcgtacttgaactgcctcaaatcatgcccctgcgccg 243
to top
>gb|BT017717.1| Zea mays clone EL01N0447A02.c mRNA sequence
          Length = 895

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 57/67 (85%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                       
Query: 562 tgtcgacgaacatggagtaacccggcgcaggcgtatttgaactgtctcagatcatgcccc 621
           |||| |||||||||||||||||| |||||  ||||  ||||| | || || |||||||||
Sbjct: 323 tgtccacgaacatggagtaaccc-gcgcacccgtacctgaaccgcctgaggtcatgcccc 265

                  
Query: 622 tgcgccg 628
           |||||||
Sbjct: 264 tgcgccg 258
to top
>emb|AL158200.17| Human DNA sequence from clone RP11-278E11 on chromosome Xp11.21-11.22
             Contains a novel gene and the gene for a novel protein
             similar to ubiquinol-cytochrome c reductase binding
             protein (UQCRB), complete sequence
          Length = 87538

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 230   ggcagggttcttcagcttcccgg 252
             |||||||||||||||||||||||
Sbjct: 42132 ggcagggttcttcagcttcccgg 42154



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   agggttcttcagcttcccgg 252
             ||||||||||||||||||||
Sbjct: 81199 agggttcttcagcttcccgg 81218
to top
>gb|AY105032.1| Zea mays PCO143982 mRNA sequence
          Length = 1025

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 57/67 (85%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                       
Query: 562 tgtcgacgaacatggagtaacccggcgcaggcgtatttgaactgtctcagatcatgcccc 621
           |||| |||||||||||||||||| |||||  ||||  ||||| | || || |||||||||
Sbjct: 353 tgtccacgaacatggagtaaccc-gcgcacccgtacctgaaccgcctgaggtcatgcccc 295

                  
Query: 622 tgcgccg 628
           |||||||
Sbjct: 294 tgcgccg 288
to top
>gb|AE006198.1| Pasteurella multocida subsp. multocida str. Pm70 section 165 of 204
            of the complete genome
          Length = 12956

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 583  ccggcgcaggcgtatttgaact 604
            ||||||||||||||||||||||
Sbjct: 9634 ccggcgcaggcgtatttgaact 9613
to top
>emb|AL356983.33| Human DNA sequence from clone RP3-441G21 on chromosome 6 Contains the
             ribosomal protein L12  (RPL12) pseudogene, complete
             sequence
          Length = 51923

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 327   tccacgttttgcttgatgtaggagcc 352
             |||| |||||||||||||||||||||
Sbjct: 33113 tccaagttttgcttgatgtaggagcc 33088
to top
>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster
          Length = 109528

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 379   cggacgcgaccagcccggcgc 399
             |||||||||||||||||||||
Sbjct: 58762 cggacgcgaccagcccggcgc 58742
to top
>emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encoding rifamycin polyketide
             synthases, ORFs 1 to 5
          Length = 53784

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 379   cggacgcgaccagcccggcgc 399
             |||||||||||||||||||||
Sbjct: 42357 cggacgcgaccagcccggcgc 42337
to top
>gb|AC114771.3| Homo sapiens BAC clone RP11-425I13 from 4, complete sequence
          Length = 121946

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  cccatgcatttttcccttgac 223
            |||||||||||||||||||||
Sbjct: 8182 cccatgcatttttcccttgac 8162
to top
>gb|AY893878.1| Synthetic construct Homo sapiens clone FLH127889.01L flap
            structure-specific endonuclease 1 (FEN1) mRNA, complete
            cds
          Length = 1449

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 448  gtccttgctcctgaggctggg 468
            |||||||||||||||||||||
Sbjct: 1309 gtccttgctcctgaggctggg 1289
to top
>gb|AY893430.1| Synthetic construct Homo sapiens clone FLH127799.01X flap
            structure-specific endonuclease 1 (FEN1) mRNA, complete
            cds
          Length = 1449

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 448  gtccttgctcctgaggctggg 468
            |||||||||||||||||||||
Sbjct: 1309 gtccttgctcctgaggctggg 1289
to top
>gb|AC004228.2|AC004228 Homo sapiens Chromosome 11q12.2 PAC clone pDJ519o13 containing human
            gene for ferritin heavy chain (FTH), complete sequence
          Length = 196080

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 448  gtccttgctcctgaggctggg 468
            |||||||||||||||||||||
Sbjct: 9349 gtccttgctcctgaggctggg 9329
to top
>dbj|AP002380.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-467L20, complete
              sequence
          Length = 188788

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 448    gtccttgctcctgaggctggg 468
              |||||||||||||||||||||
Sbjct: 101151 gtccttgctcctgaggctggg 101131
to top
>gb|AC004770.1|AC004770 Homo sapiens chromosome 11, BAC CIT-HSP-311e8 (BC269730) containing the
              hFEN1 gene, complete sequence
          Length = 185035

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 448    gtccttgctcctgaggctggg 468
              |||||||||||||||||||||
Sbjct: 100172 gtccttgctcctgaggctggg 100192
to top
>gb|U73629.1|HSU73629 Human chromosome 11 114g8 cosmid, complete sequence
          Length = 39563

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 448   gtccttgctcctgaggctggg 468
             |||||||||||||||||||||
Sbjct: 19878 gtccttgctcctgaggctggg 19858
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 187    gccccaggaaatcgcccccatgca 210
              ||||||||||||||||| ||||||
Sbjct: 557041 gccccaggaaatcgccctcatgca 557064
to top
>gb|BT017618.1| Zea mays clone EL01N0434H04.c mRNA sequence
          Length = 995

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 51/60 (85%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                       
Query: 567 acgaacatggagtaacccggcgcaggcgtatttgaactgtctcagatcatgcccctgcgc 626
           ||||| ||||||||||||| ||||  ||||  ||||| | || |||||||||||||||||
Sbjct: 341 acgaatatggagtaacccg-cgcacccgtacctgaaccgcctgagatcatgcccctgcgc 283
to top
>gb|AY644454.1| Fibropapilloma-associated turtle herpesvirus unique long region
             containing UL9-UL30 genes, genomic sequence
          Length = 43843

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   ccggctcggaaatggacagc 268
             ||||||||||||||||||||
Sbjct: 27814 ccggctcggaaatggacagc 27833
to top
>gb|AY646915.1| Fibropapilloma-associated turtle herpesvirus strain FL var C capsid
           protein (UL18) gene, partial cds
          Length = 1213

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 ccggctcggaaatggacagc 268
           ||||||||||||||||||||
Sbjct: 306 ccggctcggaaatggacagc 325
to top
>gb|AY646914.1| Fibropapilloma-associated turtle herpesvirus strain HA_variant
           capsid protein (UL18) gene, partial cds
          Length = 1213

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 ccggctcggaaatggacagc 268
           ||||||||||||||||||||
Sbjct: 306 ccggctcggaaatggacagc 325
to top
>gb|AY646913.1| Fibropapilloma-associated turtle herpesvirus strain FL_var_B capsid
           protein (UL18) gene, partial cds
          Length = 1213

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 ccggctcggaaatggacagc 268
           ||||||||||||||||||||
Sbjct: 306 ccggctcggaaatggacagc 325
to top
>gb|AY646912.1| Fibropapilloma-associated turtle herpesvirus strain FL_var_A capsid
           protein (UL18) gene, partial cds
          Length = 1213

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 ccggctcggaaatggacagc 268
           ||||||||||||||||||||
Sbjct: 306 ccggctcggaaatggacagc 325
to top
>gb|AY646910.1| Fibropapilloma-associated turtle herpesvirus strain FL_var_C capsid
           protein (UL18) gene, partial cds
          Length = 1213

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 ccggctcggaaatggacagc 268
           ||||||||||||||||||||
Sbjct: 306 ccggctcggaaatggacagc 325
to top
>gb|AY646909.1| Fibropapilloma-associated turtle herpesvirus strain FL_var_A capsid
           protein (UL18) gene, partial cds
          Length = 1213

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 ccggctcggaaatggacagc 268
           ||||||||||||||||||||
Sbjct: 306 ccggctcggaaatggacagc 325
to top
>emb|AL157695.14| Human DNA sequence from clone RP11-42I11 on chromosome 13, complete
             sequence
          Length = 65252

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    acacatattagtattattca 38
             ||||||||||||||||||||
Sbjct: 41159 acacatattagtattattca 41178
to top
>gb|AC010186.6| Homo sapiens 12p12-21.3-21.8 BAC RP11-705C15 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 74801

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    acacatattagtattattca 38
             ||||||||||||||||||||
Sbjct: 29563 acacatattagtattattca 29582
to top
>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome
          Length = 280334

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    cataaatggcagaaatcaag 151
              ||||||||||||||||||||
Sbjct: 120990 cataaatggcagaaatcaag 121009
to top
>gb|AF269475.1|AF269475 Staphylococcus epidermidis strain SR1 clone step.1005c05 genomic
            sequence
          Length = 2986

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 19   acacatattagtattattcagcaa 42
            ||||||||||||||||| ||||||
Sbjct: 1507 acacatattagtattatgcagcaa 1530
to top
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    acacatattagtattattcagcaa 42
             ||||||||||||||||| ||||||
Sbjct: 84276 acacatattagtattatgcagcaa 84299
to top
>gb|AC098586.3| Homo sapiens BAC clone RP11-109F18 from 4, complete sequence
          Length = 150172

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    acacatattagtattattca 38
             ||||||||||||||||||||
Sbjct: 82909 acacatattagtattattca 82928
to top
>gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C9 map 3p, complete sequence
          Length = 151142

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     acacatattagtattattca 38
              ||||||||||||||||||||
Sbjct: 112516 acacatattagtattattca 112535
to top
>gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B21 map 3p, complete sequence
          Length = 167220

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    acacatattagtattattca 38
             ||||||||||||||||||||
Sbjct: 75801 acacatattagtattattca 75820
to top
>gb|AC083810.16| Homo sapiens 12 BAC RP11-809N1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 95838

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    acacatattagtattattca 38
             ||||||||||||||||||||
Sbjct: 25822 acacatattagtattattca 25803
to top
>gb|AF270186.1|AF270186 Staphylococcus epidermidis strain SR1 clone step.1052f10 genomic
            sequence
          Length = 2920

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 19   acacatattagtattattcagcaa 42
            ||||||||||||||||| ||||||
Sbjct: 2834 acacatattagtattatgcagcaa 2857
to top
>gb|AF270089.1|AF270089 Staphylococcus epidermidis strain SR1 clone step.1048c06 genomic
           sequence
          Length = 2965

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 19  acacatattagtattattcagcaa 42
           ||||||||||||||||| ||||||
Sbjct: 598 acacatattagtattatgcagcaa 575
to top
>gb|AF269995.1|AF269995 Staphylococcus epidermidis strain SR1 clone step.1039c09 genomic
            sequence
          Length = 3633

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 19   acacatattagtattattcagcaa 42
            ||||||||||||||||| ||||||
Sbjct: 3598 acacatattagtattatgcagcaa 3621
to top
>dbj|AK202064.1| Mus musculus cDNA, clone:Y1G0140E10, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000053811, based on BLAT search
          Length = 399

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 440 tggtcgctgtccttgctcctgaggctgg 467
           |||||||||||||  |||||||||||||
Sbjct: 37  tggtcgctgtcctaactcctgaggctgg 10
to top
>gb|DQ163920.1| Bacteriophage SD1-M, complete genome
          Length = 281083

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    cataaatggcagaaatcaag 151
              ||||||||||||||||||||
Sbjct: 122084 cataaatggcagaaatcaag 122103
to top
>emb|AL136332.5|CNS01DW4 Human chromosome 14 DNA sequence BAC R-807G16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209157

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     acacatattagtattattca 38
              ||||||||||||||||||||
Sbjct: 133279 acacatattagtattattca 133260
to top
>emb|AL159141.5|CNS01RGQ Human chromosome 14 DNA sequence BAC R-828K24 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174318

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     acacatattagtattattca 38
              ||||||||||||||||||||
Sbjct: 142915 acacatattagtattattca 142934
to top
>gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p, complete sequence
          Length = 185496

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    acacatattagtattattca 38
             ||||||||||||||||||||
Sbjct: 41466 acacatattagtattattca 41485


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,483,730
Number of Sequences: 3902068
Number of extensions: 4483730
Number of successful extensions: 107049
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 106913
Number of HSP's gapped (non-prelim): 129
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top