>VE2_HPV45 (P36794) Regulatory protein E2|
          Length = 368

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 265 PQAQPDPTRRPRACRTTGDHH--VEFSIGREKTVSSTRRGELRKVRN*CGMHTMP 107
           P  Q   T+RPR C  T  HH  V   +      SST   + RKV   C  +T P
Sbjct: 241 PHIQTPATKRPRQCGLTEQHHGRVNTHVHNPLLCSSTSNNKRRKV---CSGNTTP 292

>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 246 RPGVPEPAGLLVIITWNSALAGKKQYPARGGGSSEKSGINAACTPCRAGP 97
           RPG P  AG           AG+   P + G    K  +   C+ CRAGP
Sbjct: 532 RPGTPGAAGA----PGQKGDAGRPGTPGQKGDMGIKGDVGGKCSSCRAGP 577

>CYOE_ECOLI (P0AEA5) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O|
           synthase)
          Length = 296

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 68  YILHIHIHILGPARHGVHAALIPDFSELPPPRAGYC 175
           +++++ ++ L   RH V+  LI   S   PP  GYC
Sbjct: 117 FVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYC 152

>CYOE_ECOL6 (P0AEA6) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O|
           synthase)
          Length = 296

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 68  YILHIHIHILGPARHGVHAALIPDFSELPPPRAGYC 175
           +++++ ++ L   RH V+  LI   S   PP  GYC
Sbjct: 117 FVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYC 152

>CYOE_ECO57 (P0AEA7) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O|
           synthase)
          Length = 296

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 68  YILHIHIHILGPARHGVHAALIPDFSELPPPRAGYC 175
           +++++ ++ L   RH V+  LI   S   PP  GYC
Sbjct: 117 FVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYC 152

>SEM3F_HUMAN (Q13275) Semaphorin-3F precursor (Semaphorin IV) (Sema IV) (Sema|
           III/F)
          Length = 785

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 71  ILHIHIHILGPARHGVHAALIP--DFSELPPPRAG 169
           +  + +H+LG  R  VHAAL P    S  PPP AG
Sbjct: 689 VTRVQLHVLG--RDAVHAALFPPLSMSAPPPPGAG 721

>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
 Frame = -2

Query: 264 PKRNPIRPGVPEPAGLLVI----ITWNSALAGKKQYPARGG-----GSSEKSGINAACTP 112
           P+  P  PG+P PAG+ V         +   G + +P   G     G + + G    CTP
Sbjct: 137 PRGPPGPPGIPGPAGISVPGKPGPQGPTGEPGPRGFPGEKGTSGVPGLNGQKGEMGHCTP 196

Query: 111 CRAG 100
           CR G
Sbjct: 197 CRPG 200

>HFR1_ARATH (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like protein HFR1)|
           (Reduced phytochrome signaling) (Basic helix-loop-helix
           FBI1 protein) (Basic helix-loop-helix protein 26)
           (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red
           light)
          Length = 292

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 89  HILGPARHGVHAALIPDFSELPPPRAGYCFFPANAEFHVMITSSPAGS 232
           H L PA H + + LIP  +   PP     F  ++++   + TSSPA S
Sbjct: 220 HGLNPANHMMPSPLIPALNWPLPPFTNISFPHSSSQSLFLTTSSPASS 267

>BCKD_MOUSE (O55028) [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]]|
           kinase, mitochondrial precursor (EC 2.7.11.4)
           (Branched-chain alpha-ketoacid dehydrogenase kinase)
           (BCKDHKIN) (BCKD-kinase)
          Length = 412

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 292 GSRCTFSLIPQAQPDPTRRPRACRTTGDHHVEFSIGREKTVSS 164
           G R   SL P      + R R+   T  HHVE +  R KTV+S
Sbjct: 10  GPRSWSSLWPLLGSSLSLRARSTSATDTHHVELARERSKTVTS 52

>CP6G2_DROME (Q9V675) Probable cytochrome P450 6g2 (EC 1.14.-.-) (CYPVIG2)|
          Length = 519

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 176 FFPANAEFHVMITSSPAGSGTPGRIGLRLGY 268
           F P N + H   T  P G G  G IG R GY
Sbjct: 437 FSPENRKLHTPYTYMPFGLGPHGCIGERFGY 467

>BCKD_RAT (Q00972) [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]]|
           kinase, mitochondrial precursor (EC 2.7.11.4)
           (Branched-chain alpha-ketoacid dehydrogenase kinase)
           (BCKDHKIN) (BCKD-kinase)
          Length = 412

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 292 GSRCTFSLIPQAQPDPTRRPRACRTTGDHHVEFSIGREKTVSS 164
           G R   SL P      + R R+   T  HHVE +  R KTV+S
Sbjct: 10  GPRSGSSLWPLLGSSLSLRVRSTSATDTHHVELARERSKTVTS 52

>ITK_HUMAN (Q08881) Tyrosine-protein kinase ITK/TSK (EC 2.7.10.2)|
           (T-cell-specific kinase) (Tyrosine-protein kinase Lyk)
           (Kinase EMT)
          Length = 620

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 218 YW*SSRGIQHWPGKNSIQHEEGGAQKSQELMRHAHHAGPVLIYVYVYGVCIDQSDLCL 45
           YW +   +     +     EE   ++++ +M+ +H   P L  V +YGVC++Q+ +CL
Sbjct: 381 YWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH---PKL--VQLYGVCLEQAPICL 433

>DNL3_MOUSE (P97386) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III)|
           (Polydeoxyribonucleotide synthase [ATP] 3)
          Length = 1015

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 195 SALAGKKQYPARGGGSSEKSGINAACTPCRAGPN 94
           + +AG +  P  GG S E  G   +  PC+  P+
Sbjct: 844 AVVAGDEASPTTGGSSGENEGTAGSAGPCKGPPS 877

>CG026_HUMAN (Q96N11) Protein C7orf26|
          Length = 449

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 80  IHIHILGPARHGVHAALIPDF-SELPPPRAGYCFFPANAEFHVMITSSP 223
           + + I GP +   HAAL P F   +  P  GY   PA+   H  + + P
Sbjct: 385 LQLVISGPVQQSPHAALPPGFYPHIHTPPLGYGAVPAHPAAHPALPTHP 433

>ZIC2_XENLA (Q91689) Zinc finger protein ZIC 2 (Zinc finger protein of the|
           cerebellum 2) (Zinc finger DNA-binding protein fZic)
          Length = 501

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 122 HAHHAGPVLIYVYVYGVCIDQSDLCL*ITARRXNNKQKN 6
           H HH  P   + Y+   CI Q  +C  I   + NN +K+
Sbjct: 253 HHHHHHPGAFFRYMRQPCIKQELICKWIDPEQLNNPKKS 291

>ITK_MOUSE (Q03526) Tyrosine-protein kinase ITK/TSK (EC 2.7.10.2)|
           (T-cell-specific kinase) (IL-2-inducible T-cell kinase)
           (Kinase EMT) (Kinase TLK)
          Length = 625

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 218 YW*SSRGIQHWPGKNSIQHEEGGAQKSQELMRHAHHAGPVLIYVYVYGVCIDQSDLCL 45
           YW +   +     +     EE   ++++ +M+ +H   P L  V +YGVC++Q+ +CL
Sbjct: 386 YWLNKDKVAIKTIQEGAMSEEDFIEEAEVMMKLSH---PKL--VQLYGVCLEQAPICL 438

>STK_HYDAT (P17713) Tyrosine-protein kinase STK (EC 2.7.10.2) (P57-STK)|
          Length = 509

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 258 RNPIRPGVPEPAGLLVIITWN 196
           R PI PG PEP   +++ TWN
Sbjct: 454 RMPIMPGCPEPLYNIMLQTWN 474

>CYOE_PSEPU (Q9WWR5) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O|
           synthase)
          Length = 295

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 68  YILHIHIHILGPARHGVHAALIPDFSELPPPRAGYC 175
           +I+++  + L   R  VH  L+   S   PP  GYC
Sbjct: 117 FIVYVGFYSLWLKRKSVHGTLVGSLSGAMPPVIGYC 152

>YFF4_YEAST (P43549) Hypothetical 70.5 kDa protein in AGP3-DAK3 intergenic|
           region
          Length = 646

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 208 HHVEFSIGREKTVSSTRRGELRKVRN*CGMHTMPG 104
           H+V FS+G E   SS    E RK++N   M T+ G
Sbjct: 264 HNVNFSLGDESYASSIADAESRKLKN---MQTLDG 295

>SEM3F_MOUSE (O88632) Semaphorin-3F precursor (Semaphorin IV) (Sema IV)|
          Length = 785

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 71  ILHIHIHILGPARHGVHAALIPDFSELPPPRAG 169
           +  + +H+LG  R  VHAAL P  +   PP  G
Sbjct: 689 VTRVQLHVLG--RDAVHAALFPPLAVSVPPPPG 719

>BCKD_HUMAN (O14874) [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]]|
           kinase, mitochondrial precursor (EC 2.7.11.4)
           (Branched-chain alpha-ketoacid dehydrogenase kinase)
           (BCKDHKIN) (BCKD-kinase)
          Length = 412

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 271 LIPQAQPDPTRRPRACRTTGDHHVEFSIGREKTVSS 164
           L P   P    R R+   T  HHVE +  R KTV+S
Sbjct: 17  LRPLLGPALALRARSTSATDTHHVEMARERSKTVTS 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,551,985
Number of Sequences: 219361
Number of extensions: 1010907
Number of successful extensions: 2814
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2813
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)