ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40l07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) com... 44 0.18
2emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chr... 40 2.8
3gb|AC151822.29| Medicago truncatula clone mth2-32h21, complete s... 40 2.8
4gb|AY090542.1| Deschampsia antarctica clone Dacor 1.7 alanine am... 40 2.8

>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3
          Length = 315079

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 106    aatcaacttcaattgctggtagaaaa 131
              |||||||||||||| |||||||||||
Sbjct: 147420 aatcaacttcaattcctggtagaaaa 147395



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>emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chromosome 7, complete
              sequence
          Length = 185507

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    ttttattctctcttcacagc 185
              ||||||||||||||||||||
Sbjct: 100464 ttttattctctcttcacagc 100445



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>gb|AC151822.29| Medicago truncatula clone mth2-32h21, complete sequence
          Length = 118094

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    cagttttcttcaccatagtt 88
             ||||||||||||||||||||
Sbjct: 51301 cagttttcttcaccatagtt 51320



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>gb|AY090542.1| Deschampsia antarctica clone Dacor 1.7 alanine aminotransferase
           mRNA, 3' UTR and partial cds
          Length = 583

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 110 aacttcaattgctggtagaaaagagcagcattatat 145
           ||||| |||||||| ||||||| | |||||||||||
Sbjct: 511 aactttaattgctgctagaaaataacagcattatat 476


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,216,145
Number of Sequences: 3902068
Number of extensions: 2216145
Number of successful extensions: 166184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 166170
Number of HSP's gapped (non-prelim): 14
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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