ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40k24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KAPP_ARATH (P46014) Kinase-associated protein phosphatase (EC 3.... 71 3e-12
2DMA1_SCHPO (Q10322) Protein dma1 31 3.0
3Y4449_ARATH (O23305) FHA domain-containing protein At4g14490 31 3.9
4EPOR_PIG (Q9MYZ9) Erythropoietin receptor precursor (EPO-R) 30 5.1
5URED_SYNPV (O87399) Urease accessory protein ureD 30 8.7

>KAPP_ARATH (P46014) Kinase-associated protein phosphatase (EC 3.1.3.16)|
          Length = 581

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 29/43 (67%), Positives = 36/43 (83%)
 Frame = -1

Query: 431 RWELVDMGSLNGTFLNSQAVAHPDVGSRRWSEPAELADGDIIT 303
           +WELVDMGSLNGT +NS +++HPD+GSR+W  P ELA  DIIT
Sbjct: 240 KWELVDMGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIIT 282



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>DMA1_SCHPO (Q10322) Protein dma1|
          Length = 267

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -1

Query: 428 WELVDMGSLNGTFLNSQAVAHPDVGSRRWSEPAELADGDII 306
           W + DMGS +GTFLN   ++ P     + S+P  +++ DI+
Sbjct: 98  WYIQDMGSSSGTFLNHVRLSPPS----KTSKPYPISNNDIL 134



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>Y4449_ARATH (O23305) FHA domain-containing protein At4g14490|
          Length = 386

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 428 WELVDMGSLNGTFLNSQAVAHPDVGSRRWSEPAELADGDII 306
           W + D+GS NGT LNS A+  P+           L DGD+I
Sbjct: 60  WVIQDLGSSNGTLLNSNAL-DPETS-------VNLGDGDVI 92



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>EPOR_PIG (Q9MYZ9) Erythropoietin receptor precursor (EPO-R)|
          Length = 509

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 81  EYVYTRVQFD-LCIDKCTGDSYQAEGYSSNALYTNIYIYIRLTIVDPSPVNDVSC 242
           +Y+Y  V    +  D  +G S + +G SS+  Y+N Y    +   +PSP N V+C
Sbjct: 454 KYLYLVVSDSGISTDYSSGGSQETQGGSSSGPYSNPYENSLVPAPEPSPPNYVTC 508



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>URED_SYNPV (O87399) Urease accessory protein ureD|
          Length = 319

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 431 RWELVDMGSLNGTFLNSQ--AVAHPDVGSRRWSEPAELADGDIIT 303
           RWELVD   L G  LN Q      P  GS  W+ P  L +G+ +T
Sbjct: 188 RWELVDRLDLGGDALNDQHGLNKRPVFGSLVWAAPMPL-NGEALT 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,136,997
Number of Sequences: 219361
Number of extensions: 1650827
Number of successful extensions: 2942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2942
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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