ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-... 32 1.1
2CRIM1_CHICK (Q8AWW5) Cysteine-rich motor neuron 1 protein precur... 31 3.1
3IAA21_ORYSA (Q5Z749) Auxin-responsive protein IAA21 (Indoleaceti... 29 9.1
4MTMR3_MOUSE (Q8K296) Myotubularin-related protein 3 (EC 3.1.3.48) 29 9.1
5GABD_DEIRA (O32507) Succinate-semialdehyde dehydrogenase [NADP+]... 29 9.1
6FABG2_BRANA (Q93X67) 3-oxoacyl-[acyl-carrier-protein] reductase ... 29 9.1

>TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-related|
           protein 6)
          Length = 581

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
 Frame = -1

Query: 422 LRKSILMPKSAMALTIAASILGQTIGSRAERIRLKRAKLAAEGRGHEHATRLEAPVSLKT 243
           LR  +L   S        ++ G  +   A     ++ +L  EG   +     +  ++L  
Sbjct: 346 LRTCLLSSNSRTLFAGGYNLPGVIVWDLAAPSLYEKCQLPCEGLSCQALANTKENMALAG 405

Query: 242 GSSGPVQLWDPLGLRVKGVVSPALVPTVGA--MY**DDHAYCGGCDNCIR 99
            + G V++WD   LR + +V     PT  A  +   DD+ + GG D C+R
Sbjct: 406 FTDGTVRIWD---LRTQEIVRNLKGPTNSARNLVVKDDNIWTGGLDACLR 452



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>CRIM1_CHICK (Q8AWW5) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
          Length = 1048

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +2

Query: 383 GPWRSSALGWTSSASL*KALQHGPPQTTALKTLWCAPSRCQEEHLLP 523
           G W  +A GW     L  AL  G P T AL  L C  S+C+E    P
Sbjct: 22  GGWHLAAAGWL----LLLALLLGQPGTRALVCLPCDESKCEEPKSCP 64



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>IAA21_ORYSA (Q5Z749) Auxin-responsive protein IAA21 (Indoleacetic acid-induced|
           protein 21)
          Length = 266

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 407 LMPKSAMALTIAASILGQTIGSRAERIRLKRAKLAAEGRGHEHATRLEAPVS 252
           L+PK       A +I+G   G R E    K A  AAE    E   + +AP +
Sbjct: 54  LLPKGGAKRGFADAIVGGPAGQRREAAGGKAAAAAAEAEEEEEKKKAQAPAA 105



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>MTMR3_MOUSE (Q8K296) Myotubularin-related protein 3 (EC 3.1.3.48)|
          Length = 1075

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = -1

Query: 497 WREHTTKFSVQWFAAVHAAVPFIGMLRKSILMPKSAMALTIAASIL-GQTIGSRAERIRL 321
           W+EH     +  FA+    VP +  LRK   +   A  L++AA +  GQ      E  + 
Sbjct: 641 WQEHGRSLELSSFASAGEEVPAMDSLRKPSRLLGGA-ELSVAAGVAEGQMENILQEATKE 699

Query: 320 KRAKLAAEGRGHEHATRL--EAPVSLKT--GSSGPVQLW 216
           +        RGH     +  EAP++ ++   + GPV L+
Sbjct: 700 ESGVEEPTHRGHTEVPEVKEEAPLAKESSMAAEGPVVLY 738



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>GABD_DEIRA (O32507) Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)|
           (SSDH)
          Length = 477

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -1

Query: 575 LRPQPLPTKVVVIALLGMAANVPLGIWREHTTKFSVQWFAAVHAAVPFIGMLRKSILMPK 396
           L P+ +P      A+L     V LGI   +   + V  FAA +  V    +L+ S L P+
Sbjct: 114 LEPKTIPVPQGEAAVLHAPLGVLLGIEPWNYPLYQVVRFAAPNLVVGNTVLLKHSELCPQ 173

Query: 395 SAMAL 381
           SA+AL
Sbjct: 174 SALAL 178



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>FABG2_BRANA (Q93X67) 3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplast|
           precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier
           protein reductase 2)
          Length = 328

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 467 QWFAAVHAAVPFIGMLRKSILMPKSAMALTIAASILGQTIGSRAERIRLKRAKLAAEGRG 288
           QW A VH+ +P  GMLR     P +  + T+  +                +A  A +  G
Sbjct: 31  QW-APVHSPMPHFGMLRCGSRRPFATSSSTVVQA--------------QAQATAAEQSTG 75

Query: 287 HEHAT-RLEAPVSLKTGSS 234
            E A  ++E+PV + TG+S
Sbjct: 76  EEEAVPKVESPVVVVTGAS 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,403,779
Number of Sequences: 219361
Number of extensions: 2066399
Number of successful extensions: 5455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5455
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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