ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197204.1| Oryza sativa (japonica cultivar-group) putative... 121 1e-24
2gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 121 1e-24
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
4dbj|AK067982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
5dbj|AK059628.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 121 1e-24
7gb|AY105414.1| Zea mays PCO079032 mRNA sequence 82 1e-12
8dbj|AK105626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
9gb|BT018250.1| Zea mays clone EL01N0563G06.c mRNA sequence 72 1e-09
10gb|AC079443.48| Mus musculus strain C57BL/6J clone rp23-381f7 ma... 46 0.056
11gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer... 46 0.056
12gb|AC102612.14| Mus musculus chromosome 9, clone RP23-417D20, co... 44 0.22
13gb|DQ019483.1| Lilium longiflorum clone LP42 unknown mRNA 44 0.22
14gb|AC174927.2| Mus musculus BAC clone RP24-325L16 from chromosom... 44 0.22
15gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 0.88
16emb|BX571789.4| Mouse DNA sequence from clone RP23-283M22 on chr... 42 0.88
17ref|XM_717449.1| Candida albicans SC5314 hypothetical protein (C... 40 3.5
18ref|XM_717312.1| Candida albicans SC5314 hypothetical protein (C... 40 3.5
19gb|AC008004.5|AC008004 Drosophila melanogaster, chromosome 2R, r... 40 3.5
20gb|AE003803.4| Drosophila melanogaster chromosome 2R, section 47... 40 3.5

>ref|NM_197204.1| Oryza sativa (japonica cultivar-group) putative PKCq-interacting
            protein (OSJNBa0078O01.9), mRNA
          Length = 1840

 Score =  121 bits (61), Expect = 1e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                        
Query: 149  actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208
            |||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||  ||||
Sbjct: 1604 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 1545

                                                                   
Query: 209  cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263
            | || |||||||||||||||||||| || || ||||| ||||||||||| |||||
Sbjct: 1544 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 1490



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>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score =  121 bits (61), Expect = 1e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                         
Query: 149   actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208
             |||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||  ||||
Sbjct: 87300 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 87241

                                                                    
Query: 209   cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263
             | || |||||||||||||||||||| || || ||||| ||||||||||| |||||
Sbjct: 87240 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 87186



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  121 bits (61), Expect = 1e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                            
Query: 149      actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208
                |||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||  ||||
Sbjct: 18583889 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 18583830

                                                                       
Query: 209      cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263
                | || |||||||||||||||||||| || || ||||| ||||||||||| |||||
Sbjct: 18583829 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 18583775



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>dbj|AK067982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121J12, full
            insert sequence
          Length = 1949

 Score =  121 bits (61), Expect = 1e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                        
Query: 149  actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208
            |||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||  ||||
Sbjct: 1614 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 1555

                                                                   
Query: 209  cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263
            | || |||||||||||||||||||| || || ||||| ||||||||||| |||||
Sbjct: 1554 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 1500



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>dbj|AK059628.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H12, full
            insert sequence
          Length = 1815

 Score =  121 bits (61), Expect = 1e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                        
Query: 149  actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208
            |||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||  ||||
Sbjct: 1614 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 1555

                                                                   
Query: 209  cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263
            | || |||||||||||||||||||| || || ||||| ||||||||||| |||||
Sbjct: 1554 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 1500



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  121 bits (61), Expect = 1e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                            
Query: 149      actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208
                |||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||  ||||
Sbjct: 18594342 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 18594283

                                                                       
Query: 209      cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263
                | || |||||||||||||||||||| || || ||||| ||||||||||| |||||
Sbjct: 18594282 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 18594228



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>gb|AY105414.1| Zea mays PCO079032 mRNA sequence
          Length = 2077

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 165  cttcagctctccactcttttccagctcgagaacaatgtnncagccccccatcagttctga 224
            |||||||||||| ||||| |||| ||| ||||| || |  || ||||| ||||| || ||
Sbjct: 1730 cttcagctctccgctcttctccatctcaagaacgatatcacatcccccaatcagctccga 1671

                                                   
Query: 225  tttgtagtagagttgggggaaggtgggccagttcgagta 263
            |||||||||||| ||||||||||| |||||||| |||||
Sbjct: 1670 tttgtagtagagctgggggaaggtaggccagttggagta 1632



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>dbj|AK105626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C12, full
            insert sequence
          Length = 1441

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 149  actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208
            |||||||||| |||| |||||||||||||||||| |||||||| ||||| ||||  ||||
Sbjct: 1249 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 1190

                         
Query: 209  cccccatcagttc 221
            | || ||||||||
Sbjct: 1189 ctccaatcagttc 1177



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>gb|BT018250.1| Zea mays clone EL01N0563G06.c mRNA sequence
          Length = 866

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                   
Query: 208 ccccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263
           ||||| ||||| || |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 849 cccccaatcagctccgatttgtagtagagctgggggaaggtgggccagttggagta 794



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>gb|AC079443.48| Mus musculus strain C57BL/6J clone rp23-381f7 map 6, complete sequence
          Length = 207091

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 233    agagttgggggaaggtgggccag 255
              |||||||||||||||||||||||
Sbjct: 149388 agagttgggggaaggtgggccag 149366



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>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208921

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 233    agagttgggggaaggtgggccag 255
              |||||||||||||||||||||||
Sbjct: 189499 agagttgggggaaggtgggccag 189521



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>gb|AC102612.14| Mus musculus chromosome 9, clone RP23-417D20, complete sequence
          Length = 202804

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 226    ttgtagtagagttgggggaagg 247
              ||||||||||||||||||||||
Sbjct: 138663 ttgtagtagagttgggggaagg 138642



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>gb|DQ019483.1| Lilium longiflorum clone LP42 unknown mRNA
          Length = 532

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 231 gtagagttgggggaaggtgggccagttcgagtat 264
           |||||| |||||||||||||||||| | ||||||
Sbjct: 160 gtagagctgggggaaggtgggccagctggagtat 127



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>gb|AC174927.2| Mus musculus BAC clone RP24-325L16 from chromosome 9, complete sequence
          Length = 195951

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 226    ttgtagtagagttgggggaagg 247
              ||||||||||||||||||||||
Sbjct: 147628 ttgtagtagagttgggggaagg 147649



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 231     gtagagttgggggaaggtgggccagttcg 259
               |||||| ||||||||||| ||||||||||
Sbjct: 2571719 gtagagctgggggaaggtcggccagttcg 2571691



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>emb|BX571789.4| Mouse DNA sequence from clone RP23-283M22 on chromosome X, complete
            sequence
          Length = 31235

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 219  ttctgatttgtagtagagttggggg 243
            ||||||||||||||| |||||||||
Sbjct: 7618 ttctgatttgtagtaaagttggggg 7594



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>ref|XM_717449.1| Candida albicans SC5314 hypothetical protein (CaO19_1494), mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  ataacaatgccatcaataga 80
           ||||||||||||||||||||
Sbjct: 926 ataacaatgccatcaataga 945



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>ref|XM_717312.1| Candida albicans SC5314 hypothetical protein (CaO19_9071), mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  ataacaatgccatcaataga 80
           ||||||||||||||||||||
Sbjct: 926 ataacaatgccatcaataga 945



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>gb|AC008004.5|AC008004 Drosophila melanogaster, chromosome 2R, region 54B-54C, BAC clone
             BACR21A09, complete sequence
          Length = 175506

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    caattcgatataggacagatgctc 105
             ||||||||||||| ||||||||||
Sbjct: 89263 caattcgatatagaacagatgctc 89240



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>gb|AE003803.4| Drosophila melanogaster chromosome 2R, section 47 of 73 of the complete
              sequence
          Length = 290783

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     caattcgatataggacagatgctc 105
              ||||||||||||| ||||||||||
Sbjct: 232280 caattcgatatagaacagatgctc 232257


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,681,907
Number of Sequences: 3902068
Number of extensions: 1681907
Number of successful extensions: 34351
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34309
Number of HSP's gapped (non-prelim): 42
length of query: 268
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 246
effective length of database: 17,147,199,772
effective search space: 4218211143912
effective search space used: 4218211143912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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