| Clone Name | rbaal40i20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197204.1| Oryza sativa (japonica cultivar-group) putative PKCq-interacting protein (OSJNBa0078O01.9), mRNA Length = 1840 Score = 121 bits (61), Expect = 1e-24 Identities = 101/115 (87%) Strand = Plus / Minus Query: 149 actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208 |||||||||| |||| |||||||||||||||||| |||||||| ||||| |||| |||| Sbjct: 1604 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 1545 Query: 209 cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263 | || |||||||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct: 1544 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 1490
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 121 bits (61), Expect = 1e-24 Identities = 101/115 (87%) Strand = Plus / Minus Query: 149 actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208 |||||||||| |||| |||||||||||||||||| |||||||| ||||| |||| |||| Sbjct: 87300 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 87241 Query: 209 cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263 | || |||||||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct: 87240 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 87186
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 121 bits (61), Expect = 1e-24 Identities = 101/115 (87%) Strand = Plus / Minus Query: 149 actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208 |||||||||| |||| |||||||||||||||||| |||||||| ||||| |||| |||| Sbjct: 18583889 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 18583830 Query: 209 cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263 | || |||||||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct: 18583829 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 18583775
>dbj|AK067982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121J12, full insert sequence Length = 1949 Score = 121 bits (61), Expect = 1e-24 Identities = 101/115 (87%) Strand = Plus / Minus Query: 149 actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208 |||||||||| |||| |||||||||||||||||| |||||||| ||||| |||| |||| Sbjct: 1614 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 1555 Query: 209 cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263 | || |||||||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct: 1554 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 1500
>dbj|AK059628.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H12, full insert sequence Length = 1815 Score = 121 bits (61), Expect = 1e-24 Identities = 101/115 (87%) Strand = Plus / Minus Query: 149 actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208 |||||||||| |||| |||||||||||||||||| |||||||| ||||| |||| |||| Sbjct: 1614 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 1555 Query: 209 cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263 | || |||||||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct: 1554 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 1500
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 121 bits (61), Expect = 1e-24 Identities = 101/115 (87%) Strand = Plus / Minus Query: 149 actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208 |||||||||| |||| |||||||||||||||||| |||||||| ||||| |||| |||| Sbjct: 18594342 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 18594283 Query: 209 cccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263 | || |||||||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct: 18594282 ctccaatcagttctgatttgtagtacagctgagggaacgtgggccagttggagta 18594228
>gb|AY105414.1| Zea mays PCO079032 mRNA sequence Length = 2077 Score = 81.8 bits (41), Expect = 1e-12 Identities = 84/99 (84%) Strand = Plus / Minus Query: 165 cttcagctctccactcttttccagctcgagaacaatgtnncagccccccatcagttctga 224 |||||||||||| ||||| |||| ||| ||||| || | || ||||| ||||| || || Sbjct: 1730 cttcagctctccgctcttctccatctcaagaacgatatcacatcccccaatcagctccga 1671 Query: 225 tttgtagtagagttgggggaaggtgggccagttcgagta 263 |||||||||||| ||||||||||| |||||||| ||||| Sbjct: 1670 tttgtagtagagctgggggaaggtaggccagttggagta 1632
>dbj|AK105626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C12, full insert sequence Length = 1441 Score = 77.8 bits (39), Expect = 2e-11 Identities = 64/73 (87%) Strand = Plus / Minus Query: 149 actccgaaagagtggccttcagctctccactcttttccagctcgagaacaatgtnncagc 208 |||||||||| |||| |||||||||||||||||| |||||||| ||||| |||| |||| Sbjct: 1249 actccgaaagcgtggacttcagctctccactcttctccagctcaagaacgatgtcacagc 1190 Query: 209 cccccatcagttc 221 | || |||||||| Sbjct: 1189 ctccaatcagttc 1177
>gb|BT018250.1| Zea mays clone EL01N0563G06.c mRNA sequence Length = 866 Score = 71.9 bits (36), Expect = 1e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 208 ccccccatcagttctgatttgtagtagagttgggggaaggtgggccagttcgagta 263 ||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 849 cccccaatcagctccgatttgtagtagagctgggggaaggtgggccagttggagta 794
>gb|AC079443.48| Mus musculus strain C57BL/6J clone rp23-381f7 map 6, complete sequence Length = 207091 Score = 46.1 bits (23), Expect = 0.056 Identities = 23/23 (100%) Strand = Plus / Minus Query: 233 agagttgggggaaggtgggccag 255 ||||||||||||||||||||||| Sbjct: 149388 agagttgggggaaggtgggccag 149366
>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208921 Score = 46.1 bits (23), Expect = 0.056 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 agagttgggggaaggtgggccag 255 ||||||||||||||||||||||| Sbjct: 189499 agagttgggggaaggtgggccag 189521
>gb|AC102612.14| Mus musculus chromosome 9, clone RP23-417D20, complete sequence Length = 202804 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 226 ttgtagtagagttgggggaagg 247 |||||||||||||||||||||| Sbjct: 138663 ttgtagtagagttgggggaagg 138642
>gb|DQ019483.1| Lilium longiflorum clone LP42 unknown mRNA Length = 532 Score = 44.1 bits (22), Expect = 0.22 Identities = 31/34 (91%) Strand = Plus / Minus Query: 231 gtagagttgggggaaggtgggccagttcgagtat 264 |||||| |||||||||||||||||| | |||||| Sbjct: 160 gtagagctgggggaaggtgggccagctggagtat 127
>gb|AC174927.2| Mus musculus BAC clone RP24-325L16 from chromosome 9, complete sequence Length = 195951 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 226 ttgtagtagagttgggggaagg 247 |||||||||||||||||||||| Sbjct: 147628 ttgtagtagagttgggggaagg 147649
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Minus Query: 231 gtagagttgggggaaggtgggccagttcg 259 |||||| ||||||||||| |||||||||| Sbjct: 2571719 gtagagctgggggaaggtcggccagttcg 2571691
>emb|BX571789.4| Mouse DNA sequence from clone RP23-283M22 on chromosome X, complete sequence Length = 31235 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 ttctgatttgtagtagagttggggg 243 ||||||||||||||| ||||||||| Sbjct: 7618 ttctgatttgtagtaaagttggggg 7594
>ref|XM_717449.1| Candida albicans SC5314 hypothetical protein (CaO19_1494), mRNA Length = 1047 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ataacaatgccatcaataga 80 |||||||||||||||||||| Sbjct: 926 ataacaatgccatcaataga 945
>ref|XM_717312.1| Candida albicans SC5314 hypothetical protein (CaO19_9071), mRNA Length = 1047 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ataacaatgccatcaataga 80 |||||||||||||||||||| Sbjct: 926 ataacaatgccatcaataga 945
>gb|AC008004.5|AC008004 Drosophila melanogaster, chromosome 2R, region 54B-54C, BAC clone BACR21A09, complete sequence Length = 175506 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 caattcgatataggacagatgctc 105 ||||||||||||| |||||||||| Sbjct: 89263 caattcgatatagaacagatgctc 89240
>gb|AE003803.4| Drosophila melanogaster chromosome 2R, section 47 of 73 of the complete sequence Length = 290783 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 caattcgatataggacagatgctc 105 ||||||||||||| |||||||||| Sbjct: 232280 caattcgatatagaacagatgctc 232257 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,681,907 Number of Sequences: 3902068 Number of extensions: 1681907 Number of successful extensions: 34351 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34309 Number of HSP's gapped (non-prelim): 42 length of query: 268 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 246 effective length of database: 17,147,199,772 effective search space: 4218211143912 effective search space used: 4218211143912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)