ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate al... 188 7e-45
2gb|AY103557.1| Zea mays PCO070710 mRNA sequence 149 6e-33
3gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 137 2e-29
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
5dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 2e-29
6dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 2e-29
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 137 2e-29
8gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds 121 1e-24
9dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolas... 121 1e-24
10dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 9e-23
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 96 8e-17
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 96 8e-17
13emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 96 8e-17
14gb|AY106811.1| Zea mays PCO109530 mRNA sequence 62 1e-06
15gb|AF467803.1| Hevea brasiliensis latex plastidic aldolase-like ... 50 0.004
16gb|BT017456.1| Zea mays clone EL01N0407B10.c mRNA sequence 46 0.066
17gb|AF537127.1| Camellia sinensis beta-1,3-glucosidase-like mRNA,... 46 0.066
18gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.26
19gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosom... 44 0.26
20emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.26
21emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 44 0.26
22emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 44 0.26
23gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, compl... 44 0.26
24ref|NM_126176.2| Arabidopsis thaliana fructose-bisphosphate aldo... 42 1.0
25ref|XM_548078.2| PREDICTED: Canis familiaris similar to RUN doma... 42 1.0
26gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.0
27gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map... 42 1.0
28gb|AF325014.2|AF325014 Arabidopsis thaliana At2g01140 (At2g01140... 42 1.0
29emb|BX820093.1|CNS0A9H9 Arabidopsis thaliana Full-length cDNA Co... 42 1.0
30emb|BX821886.1|CNS0A9AM Arabidopsis thaliana Full-length cDNA Co... 42 1.0
31emb|BX820040.1|CNS0A9FV Arabidopsis thaliana Full-length cDNA Co... 42 1.0
32emb|BX819026.1|CNS0A82R Arabidopsis thaliana Full-length cDNA Co... 42 1.0
33gb|AY086203.1| Arabidopsis thaliana clone 22418 mRNA, complete s... 42 1.0
34gb|AC012647.18| Trypanosoma brucei chromosome 2 clone RPCI93-27H... 40 4.0
35gb|AF158180.1| Homo sapiens methyl CpG binding protein 2 (MECP2)... 40 4.0
36gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence 40 4.0
37ref|XM_587886.2| PREDICTED: Bos taurus similar to RUN domain con... 40 4.0
38ref|NM_004992.2| Homo sapiens methyl CpG binding protein 2 (Rett... 40 4.0
39ref|XM_869403.1| PREDICTED: Bos taurus similar to dead end homol... 40 4.0
40gb|AY541280.1| Homo sapiens methyl CpG binding protein 2 isoform... 40 4.0
41ref|XM_848395.1| PREDICTED: Canis familiaris similar to Methyl-C... 40 4.0
42gb|AF030876.2| Homo sapiens chromosome X clone Qc-8D3, RP4-671D9... 40 4.0
43emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 40 4.0
44emb|BX538060.1|HSM806231 Homo sapiens mRNA; cDNA DKFZp686A24160 ... 40 4.0
45gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromo... 40 4.0
46emb|CR604541.1| full-length cDNA clone CS0DC024YJ12 of Neuroblas... 40 4.0
47emb|CR598471.1| full-length cDNA clone CS0DC015YE07 of Neuroblas... 40 4.0
48gb|AY029175.1| Cavia porcellus F-box protein OCP1 (OCP1) mRNA, c... 40 4.0
49gb|AF295597.1|AF295597 Macaca fascicularis methyl-CpG-binding pr... 40 4.0
50gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 4.0
51emb|AJ132917.1|HSA132917 Homo sapiens mRNA for methyl-CpG-bindin... 40 4.0
52gb|L37298.1|HUMMECP Homo sapiens methyl-CpG-binding protein (MeC... 40 4.0
53gb|BC011612.1| Homo sapiens methyl CpG binding protein 2 (Rett s... 40 4.0
54emb|X89430.1|HSRNACPGB H.sapiens mRNA for methyl CpG binding pro... 40 4.0
55emb|X94628.1|HSMECP2 H.sapiens MeCP-2 gene 40 4.0
56emb|X99686.1|HSMECP2X H.sapiens mRNA for methyl-CpG-binding prot... 40 4.0
57emb|Y12643.1|HSMECPG2 H.sapiens mRNA for methyl-CpG-binding prot... 40 4.0 
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1577

 Score =  188 bits (95), Expect = 7e-45
 Identities = 117/125 (93%)
 Strand = Plus / Minus

                                                                        
Query: 182  gatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgtcn 241
            ||||||||||||||||||||||||||||||  ||| ||||| || |||||||| ||||| 
Sbjct: 1267 gatcagtagctgtagttcttgacgaacatgccctccttggcggccgcggcctcgccgtcg 1208

                                                                        
Query: 242  ctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcctcc 301
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1207 ctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagaagcgcctcc 1148

                 
Query: 302  tgcgc 306
            |||||
Sbjct: 1147 tgcgc 1143



 Score =  151 bits (76), Expect = 2e-33
 Identities = 95/100 (95%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                        
Query: 42   gtccatctcttcctcagagctggtctcgacctgtaa-caacgacgacacactggctggct 100
            |||||||||| | ||||||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct: 1400 gtccatctctccatcagagctggtctcgacctgtaaacaacgaggacacactgcctggct 1341

                                                    
Query: 101  aaggtgccctcaagctgctcaaggcgctactagcactctc 140
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 aaggtgccctcaagctgctcaaggcgctactagcactctc 1301
to top
>gb|AY103557.1| Zea mays PCO070710 mRNA sequence
          Length = 1761

 Score =  149 bits (75), Expect = 6e-33
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                        
Query: 186  agtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgtcnctgg 245
            |||||||||||||||||||||||||   ||| |||||  | |||||||| |||||   ||
Sbjct: 1404 agtagctgtagttcttgacgaacattccctccttggcctcggcggcctcgccgtcggagg 1345

                                                                        
Query: 246  tgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcctcctgcg 305
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1344 tgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcgtcctgcg 1285

             
Query: 306  c 306
            |
Sbjct: 1284 c 1284
to top
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score =  137 bits (69), Expect = 2e-29
 Identities = 112/127 (88%)
 Strand = Plus / Plus

                                                                         
Query: 180   cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgt 239
             ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||| ||||
Sbjct: 63349 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 63408

                                                                         
Query: 240   cnctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcct 299
             | |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 63409 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 63468

                    
Query: 300   cctgcgc 306
             |||||||
Sbjct: 63469 cctgcgc 63475
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  137 bits (69), Expect = 2e-29
 Identities = 112/127 (88%)
 Strand = Plus / Plus

                                                                           
Query: 180     cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgt 239
               ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||| ||||
Sbjct: 3469394 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 3469453

                                                                           
Query: 240     cnctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcct 299
               | |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 3469454 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 3469513

                      
Query: 300     cctgcgc 306
               |||||||
Sbjct: 3469514 cctgcgc 3469520
to top
>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full
            insert sequence
          Length = 1492

 Score =  137 bits (69), Expect = 2e-29
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                        
Query: 180  cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgt 239
            ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||| ||||
Sbjct: 1265 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 1206

                                                                        
Query: 240  cnctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcct 299
            | |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 1205 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 1146

                   
Query: 300  cctgcgc 306
            |||||||
Sbjct: 1145 cctgcgc 1139
to top
>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full
            insert sequence
          Length = 1622

 Score =  137 bits (69), Expect = 2e-29
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                        
Query: 180  cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgt 239
            ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||| ||||
Sbjct: 1261 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 1202

                                                                        
Query: 240  cnctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcct 299
            | |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 1201 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 1142

                   
Query: 300  cctgcgc 306
            |||||||
Sbjct: 1141 cctgcgc 1135
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  137 bits (69), Expect = 2e-29
 Identities = 112/127 (88%)
 Strand = Plus / Plus

                                                                           
Query: 180     cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgt 239
               ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||| ||||
Sbjct: 3478098 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 3478157

                                                                           
Query: 240     cnctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcct 299
               | |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 3478158 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 3478217

                      
Query: 300     cctgcgc 306
               |||||||
Sbjct: 3478218 cctgcgc 3478224
to top
>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds
          Length = 1302

 Score =  121 bits (61), Expect = 1e-24
 Identities = 110/127 (86%)
 Strand = Plus / Minus

                                                                        
Query: 180  cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgt 239
            ||||| |||||  |||||||||||||||||||   || |||||  | ||||| || ||||
Sbjct: 1157 cggattagtagacgtagttcttgacgaacatgccttccttggcctcggcggcttcgccgt 1098

                                                                        
Query: 240  cnctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcct 299
            | |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
Sbjct: 1097 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 1038

                   
Query: 300  cctgcgc 306
            |||||||
Sbjct: 1037 cctgcgc 1031
to top
>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp
          Length = 2915

 Score =  121 bits (61), Expect = 1e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                        
Query: 180  cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgt 239
            ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||| ||||
Sbjct: 2793 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 2734

                                                                   
Query: 240  cnctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcag 294
            | |||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 2733 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcag 2679
to top
>dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A10, full
            insert sequence
          Length = 2135

 Score =  115 bits (58), Expect = 9e-23
 Identities = 74/80 (92%)
 Strand = Plus / Minus

                                                                        
Query: 227  gcggcctcnccgtcnctggtgtacttgccgagctgcgccagggagttggccttggcgcgc 286
            |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 1209 gcggcctcgccgtcgctggtgtacttgccgagctgcgccagcgagttggccttggcgcgg 1150

                                
Query: 287  agcagcagcgcctcctgcgc 306
            || |||||||| ||||||||
Sbjct: 1149 aggagcagcgcgtcctgcgc 1130
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                           
Query: 184     tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgtcnct 243
               ||||||| ||||||||||||||||||||  |||  ||||  | |||||||| ||||| ||
Sbjct: 3543513 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 3543454

                                             
Query: 244     ggtgtacttgccgagctgcgccagggagtt 273
               |||||||||||||||||||||||| |||||
Sbjct: 3543453 ggtgtacttgccgagctgcgccagcgagtt 3543424
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                           
Query: 184     tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgtcnct 243
               ||||||| ||||||||||||||||||||  |||  ||||  | |||||||| ||||| ||
Sbjct: 3543458 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 3543399

                                             
Query: 244     ggtgtacttgccgagctgcgccagggagtt 273
               |||||||||||||||||||||||| |||||
Sbjct: 3543398 ggtgtacttgccgagctgcgccagcgagtt 3543369
to top
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                         
Query: 184   tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcnccgtcnct 243
             ||||||| ||||||||||||||||||||  |||  ||||  | |||||||| ||||| ||
Sbjct: 58441 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 58382

                                           
Query: 244   ggtgtacttgccgagctgcgccagggagtt 273
             |||||||||||||||||||||||| |||||
Sbjct: 58381 ggtgtacttgccgagctgcgccagcgagtt 58352
to top
>gb|AY106811.1| Zea mays PCO109530 mRNA sequence
          Length = 1545

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 254  ccgagctgcgccagggagttggccttggcgcgcagcagcagcgcctcctgcgctg 308
            |||||||| ||||| ||||||||||| ||||||| |||||| |||| ||||||||
Sbjct: 1174 ccgagctgggccagcgagttggcctttgcgcgcaccagcagggccttctgcgctg 1120
to top
>gb|AF467803.1| Hevea brasiliensis latex plastidic aldolase-like protein mRNA,
            complete cds
          Length = 1552

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 245  gtgtacttgccgagctgcgccagggagttggccttggcgcg 285
            ||||||||||| ||||| || || |||||||||||||||||
Sbjct: 1260 gtgtacttgccaagctgagcaagtgagttggccttggcgcg 1220
to top
>gb|BT017456.1| Zea mays clone EL01N0407B10.c mRNA sequence
          Length = 859

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 257 agctgcgccagggagttggccttggcgcgcagcagcagcgcct 299
           ||||| ||||| ||||||||||| ||||||| |||||| ||||
Sbjct: 666 agctgtgccagcgagttggcctttgcgcgcaccagcagggcct 624
to top
>gb|AF537127.1| Camellia sinensis beta-1,3-glucosidase-like mRNA, partial sequence
          Length = 584

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 244 ggtgtacttgccgagctgcgccagggagttggccttggc 282
           ||||||||||||||| || ||||| |||||||| |||||
Sbjct: 305 ggtgtacttgccgagttgagccagagagttggcgttggc 267
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 281    gcgcgcagcagcagcgcctcctgcgc 306
              ||||||||||||||||| ||||||||
Sbjct: 631404 gcgcgcagcagcagcgcatcctgcgc 631429
to top
>gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosome 14, complete
             sequence
          Length = 177469

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 37    tctccgtccatctcttcctcagagct 62
             ||||| ||||||||||||||||||||
Sbjct: 24746 tctccatccatctcttcctcagagct 24771
to top
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 276    ccttggcgcgcagcagcagcgc 297
              ||||||||||||||||||||||
Sbjct: 309021 ccttggcgcgcagcagcagcgc 309000



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 281    gcgcgcagcagcagcgcctcctgc 304
              ||||||||||||||||| ||||||
Sbjct: 222907 gcgcgcagcagcagcgcttcctgc 222884
to top
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 276    ccttggcgcgcagcagcagcgc 297
              ||||||||||||||||||||||
Sbjct: 101392 ccttggcgcgcagcagcagcgc 101371
to top
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 276    ccttggcgcgcagcagcagcgc 297
              ||||||||||||||||||||||
Sbjct: 281832 ccttggcgcgcagcagcagcgc 281853
to top
>gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, complete sequence
          Length = 220538

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 37     tctccgtccatctcttcctcagagct 62
              ||||| ||||||||||||||||||||
Sbjct: 195521 tctccatccatctcttcctcagagct 195546
to top
>ref|NM_126176.2| Arabidopsis thaliana fructose-bisphosphate aldolase AT2G01140 mRNA,
            complete cds
          Length = 1515

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 251  ttgccgagctgcgccagggagttggcctt 279
            ||||||||||| ||||| |||||||||||
Sbjct: 1253 ttgccgagctgggccagtgagttggcctt 1225
to top
>ref|XM_548078.2| PREDICTED: Canis familiaris similar to RUN domain containing 1
           (LOC490955), mRNA
          Length = 2110

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 282 cgcgcagcagcagcgcctcctgcgc 306
           |||| ||||||||||||||||||||
Sbjct: 348 cgcggagcagcagcgcctcctgcgc 372
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 282     cgcgcagcagcagcgcctcctgcgc 306
               ||||||||||||||||| |||||||
Sbjct: 5068387 cgcgcagcagcagcgccgcctgcgc 5068411
to top
>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete
            sequence
          Length = 94029

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 251  ttgccgagctgcgccagggagttggcctt 279
            ||||||||||| ||||| |||||||||||
Sbjct: 4669 ttgccgagctgggccagtgagttggcctt 4697
to top
>gb|AF325014.2|AF325014 Arabidopsis thaliana At2g01140 (At2g01140/F10A8.2) mRNA, complete cds
          Length = 1470

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 251  ttgccgagctgcgccagggagttggcctt 279
            ||||||||||| ||||| |||||||||||
Sbjct: 1207 ttgccgagctgggccagtgagttggcctt 1179
to top
>emb|BX820093.1|CNS0A9H9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS72ZH02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1377

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 251  ttgccgagctgcgccagggagttggcctt 279
            ||||||||||| ||||| |||||||||||
Sbjct: 1195 ttgccgagctgggccagtgagttggcctt 1167
to top
>emb|BX821886.1|CNS0A9AM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL81ZH02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 329

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 251 ttgccgagctgcgccagggagttggcctt 279
           ||||||||||| ||||| |||||||||||
Sbjct: 88  ttgccgagctgggccagtgagttggcctt 60
to top
>emb|BX820040.1|CNS0A9FV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS67ZB05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1391

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 251  ttgccgagctgcgccagggagttggcctt 279
            ||||||||||| ||||| |||||||||||
Sbjct: 1187 ttgccgagctgggccagtgagttggcctt 1159
to top
>emb|BX819026.1|CNS0A82R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB38ZH11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 262

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 251 ttgccgagctgcgccagggagttggcctt 279
           ||||||||||| ||||| |||||||||||
Sbjct: 37  ttgccgagctgggccagtgagttggcctt 9
to top
>gb|AY086203.1| Arabidopsis thaliana clone 22418 mRNA, complete sequence
          Length = 1469

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 251  ttgccgagctgcgccagggagttggcctt 279
            ||||||||||| ||||| |||||||||||
Sbjct: 1207 ttgccgagctgggccagtgagttggcctt 1179
to top
>gb|AC012647.18| Trypanosoma brucei chromosome 2 clone RPCI93-27H14, complete sequence
          Length = 118437

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   acatgttctctttggcagct 226
             ||||||||||||||||||||
Sbjct: 27603 acatgttctctttggcagct 27584
to top
>gb|AF158180.1| Homo sapiens methyl CpG binding protein 2 (MECP2) mRNA, complete cds
          Length = 10182

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1226 gcgcagcagcagcgcctcct 1245
to top
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    acatgttctctttggcagct 226
              ||||||||||||||||||||
Sbjct: 323939 acatgttctctttggcagct 323958
to top
>ref|XM_587886.2| PREDICTED: Bos taurus similar to RUN domain containing 1,
           transcript variant 1 (LOC539525), mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 287 agcagcagcgcctcctgcgc 306
           ||||||||||||||||||||
Sbjct: 353 agcagcagcgcctcctgcgc 372
to top
>ref|NM_004992.2| Homo sapiens methyl CpG binding protein 2 (Rett syndrome) (MECP2),
            mRNA
          Length = 10182

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1226 gcgcagcagcagcgcctcct 1245
to top
>ref|XM_869403.1| PREDICTED: Bos taurus similar to dead end homolog 1 (LOC525516),
           mRNA
          Length = 1068

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 285 gcagcagcagcgcctcctgc 304
           ||||||||||||||||||||
Sbjct: 514 gcagcagcagcgcctcctgc 495
to top
>gb|AY541280.1| Homo sapiens methyl CpG binding protein 2 isoform B (MECP2) mRNA,
            complete cds
          Length = 1504

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1102 gcgcagcagcagcgcctcct 1121
to top
>ref|XM_848395.1| PREDICTED: Canis familiaris similar to Methyl-CpG-binding protein 2
            (MeCP-2 protein) (MeCP2), transcript variant 1
            (LOC612973), mRNA
          Length = 1793

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1264 gcgcagcagcagcgcctcct 1283
to top
>gb|AF030876.2| Homo sapiens chromosome X clone Qc-8D3, RP4-671D9, I104-219D,
             L110-C1837 map q28, complete sequence
          Length = 112752

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   gcgcagcagcagcgcctcct 302
             ||||||||||||||||||||
Sbjct: 22241 gcgcagcagcagcgcctcct 22222
to top
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 281    gcgcgcagcagcagcgcctcctgc 304
              ||||||||||||||||| ||||||
Sbjct: 315571 gcgcgcagcagcagcgcttcctgc 315548
to top
>emb|BX538060.1|HSM806231 Homo sapiens mRNA; cDNA DKFZp686A24160 (from clone DKFZp686A24160)
          Length = 1763

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1151 gcgcagcagcagcgcctcct 1170
to top
>gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromosome unknown, complete
              sequence
          Length = 207834

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    gcgcagcagcagcgcctcct 302
              ||||||||||||||||||||
Sbjct: 179458 gcgcagcagcagcgcctcct 179439
to top
>emb|CR604541.1| full-length cDNA clone CS0DC024YJ12 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 1524

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1033 gcgcagcagcagcgcctcct 1052
to top
>emb|CR598471.1| full-length cDNA clone CS0DC015YE07 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 1536

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1036 gcgcagcagcagcgcctcct 1055
to top
>gb|AY029175.1| Cavia porcellus F-box protein OCP1 (OCP1) mRNA, complete cds
          Length = 1180

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 cgcgcagcagcagcgcctcc 301
           ||||||||||||||||||||
Sbjct: 248 cgcgcagcagcagcgcctcc 229
to top
>gb|AF295597.1|AF295597 Macaca fascicularis methyl-CpG-binding protein 2 (MECP2) mRNA,
            complete cds
          Length = 1461

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1059 gcgcagcagcagcgcctcct 1078
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     tgccctcaagctgctcaagg 124
               ||||||||||||||||||||
Sbjct: 2164719 tgccctcaagctgctcaagg 2164738
to top
>emb|AJ132917.1|HSA132917 Homo sapiens mRNA for methyl-CpG-binding protein 2
          Length = 10091

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1134 gcgcagcagcagcgcctcct 1153
to top
>gb|L37298.1|HUMMECP Homo sapiens methyl-CpG-binding protein (MeCP-2) mRNA, complete cds
          Length = 1669

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1140 gcgcagcagcagcgcctcct 1159
to top
>gb|BC011612.1| Homo sapiens methyl CpG binding protein 2 (Rett syndrome), mRNA (cDNA
            clone MGC:10245 IMAGE:3956518), complete cds
          Length = 1716

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1143 gcgcagcagcagcgcctcct 1162
to top
>emb|X89430.1|HSRNACPGB H.sapiens mRNA for methyl CpG binding protein 2
          Length = 2351

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1030 gcgcagcagcagcgcctcct 1049
to top
>emb|X94628.1|HSMECP2 H.sapiens MeCP-2 gene
          Length = 2718

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 gcgcagcagcagcgcctcct 302
           ||||||||||||||||||||
Sbjct: 730 gcgcagcagcagcgcctcct 711
to top
>emb|X99686.1|HSMECP2X H.sapiens mRNA for methyl-CpG-binding protein 2
          Length = 1533

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1133 gcgcagcagcagcgcctcct 1152
to top
>emb|Y12643.1|HSMECPG2 H.sapiens mRNA for methyl-CpG-binding protein 2
          Length = 1652

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  gcgcagcagcagcgcctcct 302
            ||||||||||||||||||||
Sbjct: 1123 gcgcagcagcagcgcctcct 1142


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,437,544
Number of Sequences: 3902068
Number of extensions: 2437544
Number of successful extensions: 43144
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42930
Number of HSP's gapped (non-prelim): 208
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top