ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal40f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S12A5_MOUSE (Q91V14) Solute carrier family 12 member 5 (Electron... 29 7.2
2PUR8_DEIRA (Q9RSE6) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylo... 29 7.2
3S12A5_RAT (Q63633) Solute carrier family 12 member 5 (Electroneu... 29 7.2
4S12A5_HUMAN (Q9H2X9) Solute carrier family 12 member 5 (Electron... 29 7.2
5ZN575_HUMAN (Q86XF7) Zinc finger protein 575 29 9.3

>S12A5_MOUSE (Q91V14) Solute carrier family 12 member 5 (Electroneutral|
           potassium-chloride cotransporter 2) (K-Cl cotransporter
           2) (Neuronal K-Cl cotransporter) (mKCC2)
          Length = 1115

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 218 MCSSFVNSYCCIRWLSSGPDWSSKYRLAPGSWQSSG-SKC-*YFFLCSSYF 72
           MC  FVN  C ++ L   P+W  ++R    +    G S C    F+CS Y+
Sbjct: 567 MCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYY 617



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>PUR8_DEIRA (Q9RSE6) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)|
           (ASL)
          Length = 435

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 261 DLTTAADFLSLHEHGVAAYHTVFPSRDFNNLQDLQGLILT 380
           D T +A + +    GV     VFP R   NL DL GL+ +
Sbjct: 321 DATASASYATRRLTGVLRDLVVFPERMLKNLDDLGGLVFS 360



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>S12A5_RAT (Q63633) Solute carrier family 12 member 5 (Electroneutral|
           potassium-chloride cotransporter 2) (K-Cl cotransporter
           2) (Neuronal K-Cl cotransporter) (Furosemide-sensitive
           K-Cl cotransporter) (rKCC2)
          Length = 1116

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 218 MCSSFVNSYCCIRWLSSGPDWSSKYRLAPGSWQSSG-SKC-*YFFLCSSYF 72
           MC  FVN  C ++ L   P+W  ++R    +    G S C    F+CS Y+
Sbjct: 567 MCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYY 617



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>S12A5_HUMAN (Q9H2X9) Solute carrier family 12 member 5 (Electroneutral|
           potassium-chloride cotransporter 2) (Erythroid K-Cl
           cotransporter 2) (Neuronal K-Cl cotransporter) (hKCC2)
          Length = 1116

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 218 MCSSFVNSYCCIRWLSSGPDWSSKYRLAPGSWQSSG-SKC-*YFFLCSSYF 72
           MC  FVN  C ++ L   P+W  ++R    +    G S C    F+CS Y+
Sbjct: 567 MCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYY 617



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>ZN575_HUMAN (Q86XF7) Zinc finger protein 575|
          Length = 245

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
 Frame = +2

Query: 239 PPCYLGFRPDNSRRLPVTT*TRCSSISHGFSFPRL----QQLTGSAGPHPNCDDIKV*GH 406
           P    G  P   RR P     RC      FS+P      +   G A PHP  D  K   +
Sbjct: 43  PTASAGSPPRPRRRPPPQRPHRCPDCDKAFSYPSKLATHRLAHGGARPHPCPDCPKAFSY 102

Query: 407 PSK 415
           PSK
Sbjct: 103 PSK 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,057,290
Number of Sequences: 219361
Number of extensions: 1488120
Number of successful extensions: 3161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3160
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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